mRNA_H-elongata_contig67544.14364.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67544.14364.1
Unique NamemRNA_H-elongata_contig67544.14364.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig67544.14364.1 vs. uniprot
Match: A0A6H5J9B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B9_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.350e-16
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 DRAARALPNSSCRAEDELRVVFFAEVGRALESLGASPAIRAPRKLQADHGVCLRAICFLATRVCSRQRRR 210
            D+AA+ALP +S R EDELR  FFAEVG  L +LGA+PA+RAP+KLQ D GVC RA+ FLA RV S QRRR
Sbjct:   15 DKAAKALPVTSRRTEDELRRAFFAEVGAVLAALGAAPALRAPKKLQGDAGVCFRAVGFLAARVSSHQRRR 84
[Close]
BLAST of mRNA_H-elongata_contig67544.14364.1 vs. uniprot
Match: D8LMU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU6_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 5.570e-16
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 DRAARALPNSSCRAEDELRVVFFAEVGRALESLGASPAIRAPRKLQADHGVCLRAICFLATRVCSRQRRR 210
            D+AA+ALP +  RAEDELR  FFAEVG  L +LGA+PA+RAP+KLQ D GVCLRA+ FLA RV SRQ RR
Sbjct:   69 DKAAKALPVALRRAEDELRRTFFAEVGAVLAALGAAPALRAPKKLQGDAGVCLRAVGFLAARVSSRQLRR 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67544.14364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9B9_9PHAE5.350e-1667.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMU6_ECTSI5.570e-1668.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67544contigH-elongata_contig67544:94..3284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1811
Cds size1221
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931066.8111954-UTR-H-elongata_contig67544:93..2751622931066.8111954-UTR-H-elongata_contig67544:93..275Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67544 94..275 -
1691679684.1434379-UTR-H-elongata_contig67544:93..2751691679684.1434379-UTR-H-elongata_contig67544:93..275Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67544 94..275 -
1622931066.899655-UTR-H-elongata_contig67544:2578..28251622931066.899655-UTR-H-elongata_contig67544:2578..2825Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67544 2579..2825 -
1691679684.1921043-UTR-H-elongata_contig67544:2578..28251691679684.1921043-UTR-H-elongata_contig67544:2578..2825Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67544 2579..2825 -
1622931066.9144752-UTR-H-elongata_contig67544:3123..32841622931066.9144752-UTR-H-elongata_contig67544:3123..3284Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67544 3124..3284 -
1691679684.20039-UTR-H-elongata_contig67544:3123..32841691679684.20039-UTR-H-elongata_contig67544:3123..3284Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67544 3124..3284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931066.8245437-CDS-H-elongata_contig67544:275..3231622931066.8245437-CDS-H-elongata_contig67544:275..323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67544 276..323 -
1691679684.1534894-CDS-H-elongata_contig67544:275..3231691679684.1534894-CDS-H-elongata_contig67544:275..323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67544 276..323 -
1622931066.8444185-CDS-H-elongata_contig67544:659..9601622931066.8444185-CDS-H-elongata_contig67544:659..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67544 660..960 -
1691679684.1637862-CDS-H-elongata_contig67544:659..9601691679684.1637862-CDS-H-elongata_contig67544:659..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67544 660..960 -
1622931066.8679256-CDS-H-elongata_contig67544:1526..22121622931066.8679256-CDS-H-elongata_contig67544:1526..2212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67544 1527..2212 -
1691679684.1751504-CDS-H-elongata_contig67544:1526..22121691679684.1751504-CDS-H-elongata_contig67544:1526..2212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67544 1527..2212 -
1622931066.8817754-CDS-H-elongata_contig67544:2392..25781622931066.8817754-CDS-H-elongata_contig67544:2392..2578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67544 2393..2578 -
1691679684.1837482-CDS-H-elongata_contig67544:2392..25781691679684.1837482-CDS-H-elongata_contig67544:2392..2578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67544 2393..2578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67544.14364.1prot_H-elongata_contig67544.14364.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67544 276..2578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67544.14364.1

>prot_H-elongata_contig67544.14364.1 ID=prot_H-elongata_contig67544.14364.1|Name=mRNA_H-elongata_contig67544.14364.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=407bp
MVTAVAPNTPDTPSFKSGGGTSSDGANAKETPADLIRGGKGTERKVEYFE
GIASGASPASEAGRSTNNRGRSVASAPAGFRTLNGRGGGARIQNEKSLKT
DLFSSRIVHRGAGAGDPGDDNDISCDAPGEQSDGRGRGNGSGSIELGLER
NNANRCDGLRGVWSSGTLGGYSPSAGDMGVGVDLGVGADSSSLILPPTSR
RKSERGSASTGRARRGTSPIVSREARCRTLDLSSSIKRGSDRVSGPRGDG
VSHSASRTVDAVGLEMSTVGGGGSSGKATRATAAGGSSQKRCASKLPPSV
TFDQIDVEATVAENARLRRRVEELQDLADSRAYDSPVPHPDAAAEGRGGA
CRGLGGRQRGAGTPAAEAACDAILRGQVEQLRRQVRLQHCAQSSLASKPP
SSNWRP*
back to top

mRNA from alignment at H-elongata_contig67544:94..3284-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67544.14364.1 ID=mRNA_H-elongata_contig67544.14364.1|Name=mRNA_H-elongata_contig67544.14364.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3191bp|location=Sequence derived from alignment at H-elongata_contig67544:94..3284- (Himanthalia elongata Himel1 dioecious)
GACAGGGCAGCGAGAGCGCTTCCAAACTCTTCTTGCCGGGCGGAAGATGA
GCTACGCGTGGTATTCTTTGCGGAGGTTGGACGGGCCTTGGAGTCTTTGG
GGGCATCCCCTGCCATCAGAGCGCCAAGGAAGCTACAGGCGGATCATGGC
GTGTGCCTCAGGTGCCCGTTCTATATAACAGCGGCACCCCCAAAACCTGC
CGCTCCCACAGCCGATACAATACACTTACCACTCCCTTTCGTCCGTGCGT
TTGTTTGTCCGAAAGTTTGTTGCTCGAGGATATGTGCTGGTTCAGCAGTA
CCGCGTCGAATTCCCCAGCCTACGTCACATCCTTGTCTGCTTGTGTTCCC
AAATCACCTCGCGGTACCCCGTCCGGAGCGAACGCTGATGGCTTGCAAAC
CGCGCTGGCTGGCGTGATAAAACACGCTCCCGCGTCATCGTGACGTGCGA
CGCGCGCAGGGCGATTTGCTTTTTAGCGACGCGGGTCTGCAGCCGCCAGC
GGAGAAGGAATGCCCCGGCGGCGACCGCGACAGGGGTTGCGGGAGCGGGA
AATCTCTCTTTATTTGGCAGTGGAGGCGGCGGCAGCGATGCACCACATCC
CGCTGGATTGCCCACGTCCCAGCAACCCCGACCCTCTCTGCGAAGGCGTA
GATTATCTACCGCCGTTGGGGCGACCGCTACGGCGAGCGCATCGGTGGAG
GCGGCGATGGTGACAGCGGTAGCACCAAACACCCCCGATACCCCTTCGTT
TAAAAGCGGCGGGGGTACGAGTTCCGACGGGGCGAACGCAAAAGAGACGC
CTGCTGACTTGATTAGAGGAGGAAAAGGCACCGAAAGGAAGGTGGAATAT
TTTGAGGGGATCGCCTCCGGGGCTTCGCCAGCGAGCGAGGCGGTGGGGCC
GGTACTACATTCTCCGGCATCATTGACGCCGCCGCTGCGGGCCGGTGAGA
CGGAAATGAAATCGAGTCGCGTCGCGACTGCTGTAGCAGAGCGGTGTCGG
CATTTGAGTGGCGTTGTCGATCGAGGAGACCTCGAGGGAGGGGCGGAGGA
TGTGGTGCAGGAAAGCGCGCAGGGTCGAAGTACAAACAATCGGGGGAGGT
CAGTCGCATCGGCACCGGCAGGGTTTCGGACTCTGAACGGACGAGGGGGC
GGAGCGCGGATTCAAAACGAAAAATCGCTAAAAACAGACCTGTTTTCTTC
GAGGATAGTGCACAGGGGTGCTGGTGCTGGTGATCCCGGAGATGATAACG
ACATTTCGTGCGATGCTCCGGGTGAACAAAGCGACGGCCGCGGCCGTGGC
AACGGTAGTGGAAGTATAGAATTAGGCCTTGAGCGCAATAATGCCAATCG
TTGCGACGGACTTAGGGGCGTATGGTCTTCCGGAACACTCGGTGGATACT
CTCCGTCAGCGGGCGACATGGGTGTTGGCGTTGACCTTGGAGTCGGCGCC
GATTCGTCCTCGCTGATTCTGCCGCCGACTTCGAGGAGGAAATCCGAGCG
AGGTTCGGCGTCAACAGGGCGGGCGCGTCGTGGGACAAGCCCTATCGTGT
CTAGAGAGGCTAGATGTCGCACGCTTGACCTCAGCAGCTCAATTAAGAGA
GGTTCTGACCGAGTCTCTGGTCCACGGGGCGACGGCGTCAGCCACAGCGC
TAGCCGAACAGTGGACGCTGTCGGATTGGAAATGAGTACCGTTGGGGGTG
GAGGTTCATCGGGAAAAGCTACCCGTGCGACTGCCGCGGGCGGATCGTCA
CAGAAACGGTGAGCACGCGAAAGTGCATGCAAGCGAACGACTGAAACGGC
GAAAGTGCATGCATTTTTAGAAGTCAGTTGTTGCGCCGACGTGAGGTCGA
GACCCATGATAATATTGTGGTGCAAAATAGTCTAAAATGGTGTGTAATAG
CGTATAATACTGTAGAATAATGTATAATAGGTAGTCCTTCCCCCGAATAA
TAATGCCAAAAAACAAAAACAAAAGCAATACCGACATTATGTATGTAGTG
GAATGCGTGGTACGTGATGTGGGTGTGACGTTGGACCGCCTTGACCTGGT
GGTATCCTCCCTTCTCGTCGCAGGCTGCCTCTGTACCCACGGTTCAATGC
GTTTTCTTGAAATGCGCACGCTGAGTCCCTCAACCCGCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCTTTCCCCCCCCCCCCCCCCCCAACCTCTACTCGA
CTGTTGCAAATGTTATAATCACTACCGCATCACCTCTGATTTCACCCTTT
CCCTCTCTTCTTCATCCCTGACCGACCAAATTTCCTCTCCGGGCTGATGA
TACTCTAACGGACGCTGAAATCAGTTGCGCGTCCAAGCTGCCGCCATCGG
TGACATTCGACCAAATCGACGTGGAGGCGACGGTGGCCGAGAACGCCCGT
CTGCGGCGGCGCGTTGAGGAGCTACAAGACCTCGCCGACAGTCGAGCCTA
CGACTCCCCGGTGCCGCATCCGGATGCCGCCGCTGAGGGGAGAGGTGGAG
CTTGTCGAGGATTAGGCGGTAGACAGAGGGGGGCGGGAACCCCGGCGGCA
GAGGCCGCGTGCGACGCGATCTTGCGGGGACAGGTGGAGCAGCTGAGGCG
GCAAGTCAGGCTACAGCACTGCGCCGTCGACGCGACCGCCGCCGTGACGC
GGGAGGTGGGGAATCGTCCACCGAGAGGCGCGTCGTGTTTGCCGCGACGT
GTAAGCAAGGGCGTCGTGGAAGTTGCGAGATCTGTTGTCGAACTCGTGGA
GATCCGTGCAAATCGGCACCGTAGACGTATGTGGTGCCGACCATTTTATT
GTCGTGGCACGGAGTGCCTTCTTCACGTCGTGACCCTCCCCCTCCTCTTC
TTTTTTACTCCCCTCTCTCCCTCCTCCCCCTAATATAAAATCTCCATTCA
TCGACTCTGGCTGAACGCCGACTCCTACCCTCGCTACCTTGCCCGCTTAC
CAAGGTTAAAGCAATCCTCGCTCGCCTCGAAGCCACCTTCATCGAACTGG
CGGCCCTAGGGCGGAACGGAAGCTCGACCTCTTCCTTCGGCGCCGCCTTT
CAAGATACTCAAACCTCATTAGCACCAAAGACTGGTGGGCCCTACGTAAA
CCAAACTATCAGGGCCGTGGGCGGTGTTGCGGGAGCCGCGGCGCTCCCCG
CTTGGAATCAGCTCCTCCATCGCGTGGAAACCTTGTCGAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig67544:94..3284-

>mRNA_H-elongata_contig67544.14364.1 ID=mRNA_H-elongata_contig67544.14364.1|Name=mRNA_H-elongata_contig67544.14364.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2442bp|location=Sequence derived from alignment at H-elongata_contig67544:94..3284- (Himanthalia elongata Himel1 dioecious)
ATGGTGACAGCGGTAGCACCAAACACCCCCGATACCCCTTCGTTTAAAAG
CGGCGGGGGTACGAGTTCCGACGGGGCGAACGCAAAAGAGACGCCTGCTG
ACTTGATTAGAGGAGGAAAAGGCACCGAAAGGAAGGTGGAATATTTTGAG
GGGATCGCCTCCGGGGCTTCGCCAGCGAGCGAGGCGATGGTGACAGCGGT
AGCACCAAACACCCCCGATACCCCTTCGTTTAAAAGCGGCGGGGGTACGA
GTTCCGACGGGGCGAACGCAAAAGAGACGCCTGCTGACTTGATTAGAGGA
GGAAAAGGCACCGAAAGGAAGGTGGAATATTTTGAGGGGATCGCCTCCGG
GGCTTCGCCAGCGAGCGAGGCGGGTCGAAGTACAAACAATCGGGGGAGGT
CAGTCGCATCGGCACCGGCAGGGTTTCGGACTCTGAACGGACGAGGGGGC
GGAGCGCGGATTCAAAACGAAAAATCGCTAAAAACAGACCTGTTTTCTTC
GAGGATAGTGCACAGGGGTGCTGGTGCTGGTGATCCCGGAGATGATAACG
ACATTTCGTGCGATGCTCCGGGTGAACAAAGCGACGGCCGCGGCCGTGGC
AACGGTAGTGGAAGTATAGAATTAGGCCTTGAGCGCAATAATGCCAATCG
TTGCGACGGACTTAGGGGCGTATGGTCTTCCGGAACACTCGGTGGATACT
CTCCGTCAGCGGGCGACATGGGTGTTGGCGTTGACCTTGGAGTCGGCGCC
GATTCGTCCTCGCTGATTCTGCCGCCGACTTCGAGGAGGAAATCCGAGCG
AGGTTCGGCGTCAACAGGGCGGGCGCGTCGTGGGACAAGCCCTATCGTGT
CTAGAGAGGCTAGATGTCGCACGCTTGACCTCAGCAGCTCAATTAAGAGA
GGTTCTGACCGAGTCTCTGGTCCACGGGGCGACGGCGTCAGCCACAGCGC
TAGCCGAACAGTGGACGCTGTCGGATTGGAAATGAGTACCGTTGGGGGTG
GAGGTTCATCGGGAAAAGCTACCCGTGCGACTGCCGCGGGCGGATCGTCA
CAGAAACGGGTCGAAGTACAAACAATCGGGGGAGGTCAGTCGCATCGGCA
CCGGCAGGGTTTCGGACTCTGAACGGACGAGGGGGCGGAGCGCGGATTCA
AAACGAAAAATCGCTAAAAACAGACCTGTTTTCTTCGAGGATAGTGCACA
GGGGTGCTGGTGCTGGTGATCCCGGAGATGATAACGACATTTCGTGCGAT
GCTCCGGGTGAACAAAGCGACGGCCGCGGCCGTGGCAACGGTAGTGGAAG
TATAGAATTAGGCCTTGAGCGCAATAATGCCAATCGTTGCGACGGACTTA
GGGGCGTATGGTCTTCCGGAACACTCGGTGGATACTCTCCGTCAGCGGGC
GACATGGGTGTTGGCGTTGACCTTGGAGTCGGCGCCGATTCGTCCTCGCT
GATTCTGCCGCCGACTTCGAGGAGGAAATCCGAGCGAGGTTCGGCGTCAA
CAGGGCGGGCGCGTCGTGGGACAAGCCCTATCGTGTCTAGAGAGGCTAGA
TGTCGCACGCTTGACCTCAGCAGCTCAATTAAGAGAGGTTCTGACCGAGT
CTCTGGTCCACGGGGCGACGGCGTCAGCCACAGCGCTAGCCGAACAGTGG
ACGCTGTCGGATTGGAAATGAGTACCGTTGGGGGTGGAGGTTCATCGGGA
AAAGCTACCCGTGCGACTGCCGCGGGCGGATCGTCACAGAAACGTTGCGC
GTCCAAGCTGCCGCCATCGGTGACATTCGACCAAATCGACGTGGAGGCGA
CGGTGGCCGAGAACGCCCGTCTGCGGCGGCGCGTTGAGGAGCTACAAGAC
CTCGCCGACAGTCGAGCCTACGACTCCCCGGTGCCGCATCCGGATGCCGC
CGCTGAGGGGAGAGGTGGAGCTTGTCGAGGATTAGGCGGTAGACAGAGGG
GGGCGGGAACCCCGGCGGCAGAGGCCGCGTGCGACGCGATCTTGCGGGGA
CAGGTGGAGCAGCTGAGGCGGCAAGTCAGGCTACAGCACTGCGCCTTGCG
CGTCCAAGCTGCCGCCATCGGTGACATTCGACCAAATCGACGTGGAGGCG
ACGGTGGCCGAGAACGCCCGTCTGCGGCGGCGCGTTGAGGAGCTACAAGA
CCTCGCCGACAGTCGAGCCTACGACTCCCCGGTGCCGCATCCGGATGCCG
CCGCTGAGGGGAGAGGTGGAGCTTGTCGAGGATTAGGCGGTAGACAGAGG
GGGGCGGGAACCCCGGCGGCAGAGGCCGCGTGCGACGCGATCTTGCGGGG
ACAGGTGGAGCAGCTGAGGCGGCAAGTCAGGCTACAGCACTGCGCCCAAT
CCTCGCTCGCCTCGAAGCCACCTTCATCGAACTGGCGGCCCTAGCAATCC
TCGCTCGCCTCGAAGCCACCTTCATCGAACTGGCGGCCCTAG
back to top