mRNA_H-elongata_contig67511.14362.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67511.14362.1
Unique NamemRNA_H-elongata_contig67511.14362.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67511.14362.1 vs. uniprot
Match: A0A6H5KGK9_9PHAE (Glycine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK9_9PHAE)

HSP 1 Score: 358 bits (918), Expect = 1.020e-115
Identity = 185/251 (73.71%), Postives = 212/251 (84.46%), Query Frame = 1 
Query:    1 VMAALEAMSENEEEVLAFQKEMEVNEKATLGE-EGFEITKGMCSWTKSTKKISEIKYTPSVIEPSFGIGRILYSLLEHSFYVREAKDGDDDGGMKRGVMAFRPLVAPIKCAVLPLSSQASFMPLCARVMDALGGLHLSAKLDSSGAAVGRRYARMDELGVPFGVTVDFQTVEDETVTLRERDSMSQIRMPVADVAPLVTRLVKEETAWKDCTLKYPMVRDEKGGASD----------DNDGSALATERTPC 720
            V+AALEA+SE EE++LAFQ ++E   KA+LGE  GFEITKGMCSWTK +KKISEIK+TPSVIEPSFGIGRIL+SLLEHSFYVRE ++G DD  MKRGVMAFRPLVAPIKCAV PLSSQA+F+PLC RVMDALG +HLSAK+D+SGAA+GRRYARMDELG PFGVTVDFQTVEDETVTLRERDSM+QIRMP+ADVAPL+ RLV EE AWK+CT +YP+VR+E G ++               SAL TE TPC
Sbjct:  533 VIAALEALSEKEEDLLAFQAKLEEEGKASLGEGAGFEITKGMCSWTKGSKKISEIKFTPSVIEPSFGIGRILHSLLEHSFYVRETEEGADDKDMKRGVMAFRPLVAPIKCAVFPLSSQAAFIPLCGRVMDALGKMHLSAKMDASGAALGRRYARMDELGAPFGVTVDFQTVEDETVTLRERDSMTQIRMPMADVAPLMARLVTEEVAWKECTSQYPVVREEVGDSTSAXXXXXXXXXXXXXSALTTESTPC 783
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BLAST of mRNA_H-elongata_contig67511.14362.1 vs. uniprot
Match: D7FJG6_ECTSI (Glycyl-tRNA Synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG6_ECTSI)

HSP 1 Score: 350 bits (899), Expect = 1.140e-109
Identity = 183/251 (72.91%), Postives = 207/251 (82.47%), Query Frame = 1 
Query:    1 VMAALEAMSENEEEVLAFQKEMEVNEKATLGEEG-FEITKGMCSWTKSTKKISEIKYTPSVIEPSFGIGRILYSLLEHSFYVREAKDGDDDGGMKRGVMAFRPLVAPIKCAVLPLSSQASFMPLCARVMDALGGLHLSAKLDSSGAAVGRRYARMDELGVPFGVTVDFQTVEDETVTLRERDSMSQIRMPVADVAPLVTRLVKEETAWKDCTLKYPMVRDEKGGASDDNDG----------SALATERTPC 720
            V+AALEA+SE EE++LAFQ ++E   KA+LGE   FEITKGMCSWTK +KKISEIK+TPSVIEPSFGIGRIL+SLLEHSFYVREA++G DD  MKRGVMAFRPLVAPIKCAV PLSSQA+F PLC RVMDALG +HLSAK+D+SGAA+GRRYARMDELG PFGVTVDFQTVEDETVTLRERDSM+QIRMP+ DVAPL+ RLV EE AWK+CT KYP+VR+E                    +AL TE TPC
Sbjct:  930 VIAALEALSEKEEDLLAFQAKLEEEGKASLGEGAVFEITKGMCSWTKGSKKISEIKFTPSVIEPSFGIGRILHSLLEHSFYVREAEEGADDKDMKRGVMAFRPLVAPIKCAVFPLSSQAAFFPLCGRVMDALGKMHLSAKMDASGAALGRRYARMDELGAPFGVTVDFQTVEDETVTLRERDSMTQIRMPMPDVAPLMARLVTEEVAWKECTSKYPVVREEADXXXXXXXXXXXXXXXXXXNALTTESTPC 1180
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BLAST of mRNA_H-elongata_contig67511.14362.1 vs. uniprot
Match: A0A7S2RC37_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RC37_9STRA)

HSP 1 Score: 216 bits (551), Expect = 8.790e-66
Identity = 122/239 (51.05%), Postives = 158/239 (66.11%), Query Frame = 1 
Query:    1 VMAALEAMSENEEEVLAFQKEMEVNEKATLGEEGFEITKGMCSWTKSTKKISEIKYTPSVIEPSFGIGRILYSLLEHSFYVREAKDGDDDGGMKRGVMAFRPLVAPIKCAVLPLSSQASFM-PLCARVMDALGGLHLSAKLDSSGAAVGRRYARMDELGVPFGVTVDFQTVEDETVTLRERDSMSQIRMPVADVAPLVTRLVKEETAWKDCTLKYPMVRDEKGGASDDNDGSALATERT 714
            V AALEA++E  E+       +E     T   +G+ + K M SWT+ TKK+ EIKYTPSVIEPSFG+GRILYSLLEHSFY R   DGD+    +R VM F P VAPIKCAVLP+S+    + P+   +  +L GL L+ ++D+S   VGRRYAR+DE+GVPF  TVDFQT ED TVTLRERDS+ QIR+P  +V PL+  +    ++WKD   KYP+V+ +K    +D+D     T  T
Sbjct:  109 VSAALEALAERWEDFEPIATALETE--GTTNVDGYTVEKHMVSWTRHTKKVHEIKYTPSVIEPSFGMGRILYSLLEHSFYQR---DGDE----QRCVMKFPPTVAPIKCAVLPISNSEDLLNPIAHEIAASLMGLDLATRVDTSSTTVGRRYARVDEMGVPFACTVDFQTPEDGTVTLRERDSLQQIRIPKDEVTPLIYSMCHGRSSWKDAAQKYPIVQVKK----EDSDADQPETPTT 334
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BLAST of mRNA_H-elongata_contig67511.14362.1 vs. uniprot
Match: A0A836C9B2_9STRA (Glycine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9B2_9STRA)

HSP 1 Score: 224 bits (571), Expect = 5.140e-65
Identity = 119/232 (51.29%), Postives = 162/232 (69.83%), Query Frame = 1 
Query:    1 VMAALEAMSENEEEVLAFQKEMEVNEKATLGEEGFEITKGMCSWTKSTKKISEIKYTPSVIEPSFGIGRILYSLLEHSFYVREAKDGDDDGGMKRGVMAFRPLVAPIKCAVLPLSSQASFMPLCARVMDALGGLHLSAKLDSSGAAVGRRYARMDELGVPFGVTVDFQTVEDETVTLRERDSMSQIRMPVADVAPLVTRLVKEETAWKDCTLKYPMVRDEKGGASDDNDGSA 696
            VMAAL+A++++   + AF+ +++ +  A L   GF + + M +W K+ K + E K+TPSVIEPSFGIGR+LYSLLEHSFY RE   GD+    +RGV  F   VAPIKCA+ PLS+  +F PLC+ V   LG + ++ + D+SG ++GRRYAR DE+GVPF VTVDFQ+VED TVTLRERDSM+QIR+ VA +  L+  LV    AW+  T ++P+VR E     ++ DGSA
Sbjct:  503 VMAALDALADDHPALEAFEAKLDTDGSAELA--GFTVDRAMIAWKKTEKMVQEEKFTPSVIEPSFGIGRVLYSLLEHSFYTRE---GDE----QRGVFRFNAAVAPIKCAIFPLSANDAFNPLCSEVAKLLGAVDVATRTDASGVSLGRRYARADEIGVPFAVTVDFQSVEDNTVTLRERDSMAQIRLAVAALPDLLVSLVFRRAAWQQATERFPVVRSE----DEEGDGSA 721
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BLAST of mRNA_H-elongata_contig67511.14362.1 vs. uniprot
Match: A0A448Z3E7_9STRA (Glycine--tRNA ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3E7_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.230e-61
Identity = 113/239 (47.28%), Postives = 160/239 (66.95%), Query Frame = 1 
Query:    1 VMAALEAMSENEEEVLAFQKEMEVNEKATLGEEGFEITKGMCSWTKSTKKISEIKYTPSVIEPSFGIGRILYSLLEHSFYVREAKDGDDDGGMKRGVMAFRPLVAPIKCAVLPLSSQASFMPLCARVMDALGGLHLSAKLDSSGAAVGRRYARMDELGVPFGVTVDFQTVEDETVTLRERDSMSQIRMPVADVAPLVTRLVKEETAWKDCTLKYPMVRDEKGGASDDNDGSALATERTP 717
            V  AL+ ++E+ ++     K +E + K T+  +GFE+TK M SW +STKK+ E+K+TPSVIEPSFG+GRILYSLLEHSFY+RE  +       +R VM F+P VAP KCAVLP+SS   F  +   +  +L    L+ ++D S AA+GRRYAR DE+GVPF VTVDF T++D++VT+RERDSM Q+R+P ++V  ++  ++   T+W + T KYP+V+       DD +G   A    P
Sbjct:  355 VSGALDKLAESWKDFEPIAKALEADGKVTV--DGFEVTKDMVSWEQSTKKVHELKFTPSVIEPSFGMGRILYSLLEHSFYIRENDE-------QRCVMKFKPQVAPQKCAVLPISSSPEFNAIVDGIAASLMEYDLATRVDKSTAALGRRYARSDEVGVPFAVTVDFDTLKDDSVTIRERDSMVQVRLPKSEVPHVIYDIIHNRTSWDEVTSKYPVVQ------VDDGEGGGAAAPAAP 578
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BLAST of mRNA_H-elongata_contig67511.14362.1 vs. uniprot
Match: A0A7S2HL85_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HL85_9STRA)

HSP 1 Score: 204 bits (518), Expect = 2.580e-61
Identity = 115/237 (48.52%), Postives = 152/237 (64.14%), Query Frame = 1 
Query:    1 VMAALEAMSENEEEVLAFQKEMEVNEKATLGEEGFEITKGMCSWTKSTKKISEIKYTPSVIEPSFGIGRILYSLLEHSFYVREAKDGDDDGGMKRGVMAFRPLVAPIKCAVLPLSSQASFMPLCARVMDALGGLHLSAKLDSSGAAVGRRYARMDELGVPFGVTVDFQTVEDETVTLRERDSMSQIRMPVADVAPLVTRLVKEETAWKDCTLKYPMVR-DEKGGASDDNDGSALATE 708
            V  ALEA++EN E+       +E   KA +  +GFEITK M +W K++KK+ EIK+TPSVIEPSFG+GRILYSLLEHSFY RE+ +       +R VM F P VAP KCAVLP+SS      +   +   L    +S ++D S A++GRRYAR DE+GVPF VTVDF++++D TVTLRERDS  QIR+P  D+  L+   V  +  W D   KYP+V+ +E G    D +   +  E
Sbjct:   70 VSGALEALAENWEDFSKVASALEDEGKAVV--DGFEITKDMVTWKKTSKKVHEIKFTPSVIEPSFGMGRILYSLLEHSFYQRESDE-------QRCVMRFNPQVAPNKCAVLPISSGDEVNAIVDEIAADLMDSDISTRVDKSTASLGRRYARADEVGVPFAVTVDFESIKDNTVTLRERDSTVQIRLPKEDITKLIFDFVHAKMTWDDAKEKYPVVQVNEDGETKADPNAKTVVVE 297
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BLAST of mRNA_H-elongata_contig67511.14362.1 vs. uniprot
Match: A0A1Z5KMP6_FISSO (Glycine--tRNA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KMP6_FISSO)

HSP 1 Score: 213 bits (541), Expect = 5.280e-61
Identity = 109/190 (57.37%), Postives = 139/190 (73.16%), Query Frame = 1 
Query:   97 EGFEITKGMCSWTKSTKKISEIKYTPSVIEPSFGIGRILYSLLEHSFYVREAKDGDDDGGMKRGVMAFRPLVAPIKCAVLPLSSQASFMPLCARVMDALGGLHLSAKLDSSGAAVGRRYARMDELGVPFGVTVDFQTVEDETVTLRERDSMSQIRMPVADVAPLVTRLVKEETAWKDCTLKYPMVRDEKG 666
            +GFEITK M SWTKS+KK+ E+K+TPSVIEPSFG+GRILYSLLEHSFY RE   GD+    +R VM F P VAP KCAV P+SS A    +   +   L    L+ ++D S AA+GRRYAR DELGVPF VTVDF+T++D TVTLRERDSM Q+R+P +++ PL+ R+V  +  W   T KYP+V+ ++G
Sbjct:  494 DGFEITKEMVSWTKSSKKVHEVKFTPSVIEPSFGMGRILYSLLEHSFYTRE---GDE----QRTVMRFNPQVAPQKCAVFPISSNAECNAVVDEIAADLMDSDLATRVDKSSAALGRRYARTDELGVPFAVTVDFETLKDNTVTLRERDSMKQVRLPKSEITPLLMRIVHGKLNWDAVTKKYPLVQVDEG 676
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BLAST of mRNA_H-elongata_contig67511.14362.1 vs. uniprot
Match: K0T150_THAOC (HGTP_anticodon domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T150_THAOC)

HSP 1 Score: 203 bits (517), Expect = 2.430e-60
Identity = 110/217 (50.69%), Postives = 146/217 (67.28%), Query Frame = 1 
Query:    1 VMAALEAMSENEEEVLAFQKEMEVNEKATLGEEGFEITKGMCSWTKSTKKISEIKYTPSVIEPSFGIGRILYSLLEHSFYVREAKDGDDDGGMKRGVMAFRPLVAPIKCAVLPLSSQASFMPLCARVMDALGGLHLSAKLDSSGAAVGRRYARMDELGVPFGVTVDFQTVEDETVTLRERDSMSQIRMPVADVAPLVTRLVKEETAWKDCTLKYPMV 651
            V  ALE+++EN  +       +E + KAT+  +GFEIT+GM +W K+TKK+ EIK+TPSVIEPSFG+GRILYSLLEH FY R+A +       +R VM F+P VAP KCAVLPLSS      +   +   L    L+ ++D S   +GR+YAR DE+GVPF +TVDF+T++D TVTLRERDS  QIR+P +DV  L+   V     W++ T KYP+V
Sbjct:  168 VSGALESLAENWADFEPIASALETDGKATV--DGFEITQGMVTWKKTTKKVHEIKFTPSVIEPSFGMGRILYSLLEHCFYQRDADE-------QRCVMRFKPAVAPQKCAVLPLSSSDELNAVIDEIAADLLESDLATRVDKSSTTLGRKYARADEVGVPFAITVDFETLKDGTVTLRERDSTVQIRLPKSDVTRLIFDFVHGRDTWEEVTKKYPVV 375
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BLAST of mRNA_H-elongata_contig67511.14362.1 vs. uniprot
Match: A0A1E7FVA0_9STRA (Glycine--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVA0_9STRA)

HSP 1 Score: 207 bits (528), Expect = 7.830e-60
Identity = 114/240 (47.50%), Postives = 160/240 (66.67%), Query Frame = 1 
Query:    1 VMAALEAMSENEEEVLAFQKEMEVNEKATLGEEGFEITKGMCSWTKSTKKISEIKYTPSVIEPSFGIGRILYSLLEHSFYVREAKDGDDDGGMKRGVMAFRPLVAPIKCAVLPLSSQASFMPLCARVMDALGGLHLSAKLDSSGAAVGRRYARMDELGVPFGVTVDFQTVEDETVTLRERDSMSQIRMPVADVAPLVTRLVKEETAWKDCTLKYPMVRDEKGGASDDNDGSA-LATERTP 717
            V  AL+A++E+ ++     K ++ + K ++  +GFE+TK M SW ++ KK+ E K+TPSVIEPSFG+GRILYSLLEHSFY R+  +       +R VM F P VAP KCAVLP+SS   F  +   +  +L    L+ ++D S AA+GRRYAR DE+GVPF +TVDF T+ D++VT+RERDSM QIR+P  DV  ++  +V     W+ CT KYP+V+ ++G   +D D SA  A + TP
Sbjct:  355 VSTALDALAEDWKDFEPIAKALDADGKTSI--DGFEVTKDMVSWAQTKKKVHEAKFTPSVIEPSFGMGRILYSLLEHSFYQRDMDE-------QRCVMRFNPRVAPQKCAVLPISSGPEFNVVVDEIAASLMDYDLATRVDKSTAALGRRYARSDEIGVPFAITVDFDTLSDDSVTIRERDSMVQIRLPKKDVHSVIFDIVHGRITWESCTEKYPVVQVDEG---EDGDNSAPAAPKETP 582
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BLAST of mRNA_H-elongata_contig67511.14362.1 vs. uniprot
Match: A0A7S0CDI8_9STRA (Glycine--tRNA ligase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDI8_9STRA)

HSP 1 Score: 207 bits (526), Expect = 5.700e-59
Identity = 115/239 (48.12%), Postives = 156/239 (65.27%), Query Frame = 1 
Query:    1 VMAALEAMSENEEEVLAFQKEMEVNEKATLGEEGFEITKGMCSWTKSTKKISEIKYTPSVIEPSFGIGRILYSLLEHSFYVREAKDGDDDGGMKRGVMAFRPLVAPIKCAVLPLSSQASFMPLCARVMDALGGLHLSAKLDSSGAAVGRRYARMDELGVPFGVTVDFQTVEDETVTLRERDSMSQIRMPVADVAPLVTRLVKEETAWKDCTLKYPMVRDEKGGASDDNDGSALATERTP 717
            V   L+ +++N ++     + +E N + T+G   F+ITK M SWTK++KK+ EIKY PSV+EPSFG+GRILYSLLEHSFYVRE+ +       +R VM F   VAP KCA+LP+SS A    +   +   L    +S + D S AA+GRRYAR DELGVPF VTVDF T+ D +VTLRERD+M QIR+P +DV  L++ +V  +T W+ C +KY +V+       DD +G+A A    P
Sbjct:  445 VSGLLDDLADNWDDFEPIAQALEANGETTVG--NFKITKDMVSWTKTSKKVHEIKYMPSVVEPSFGMGRILYSLLEHSFYVRESDE-------QRCVMGFNARVAPTKCAILPISSNAECNAVVDEIALDLMENDISIRNDKSTAALGRRYARADELGVPFAVTVDFDTLVDHSVTLRERDTMKQIRLPKSDVTTLISAMVMGKTTWEKCMMKYQVVQ------VDDGEGNAKAELAKP 668
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67511.14362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGK9_9PHAE1.020e-11573.71Glycine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7FJG6_ECTSI1.140e-10972.91Glycyl-tRNA Synthetase n=1 Tax=Ectocarpus siliculo... [more]
A0A7S2RC37_9STRA8.790e-6651.05Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A836C9B2_9STRA5.140e-6551.29Glycine--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
A0A448Z3E7_9STRA1.230e-6147.28Glycine--tRNA ligase n=1 Tax=Pseudo-nitzschia mult... [more]
A0A7S2HL85_9STRA2.580e-6148.52Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1Z5KMP6_FISSO5.280e-6157.37Glycine--tRNA ligase n=2 Tax=Fistulifera solaris T... [more]
K0T150_THAOC2.430e-6050.69HGTP_anticodon domain-containing protein n=1 Tax=T... [more]
A0A1E7FVA0_9STRA7.830e-6047.50Glycine--tRNA ligase n=1 Tax=Fragilariopsis cylind... [more]
A0A7S0CDI8_9STRA5.700e-5948.12Glycine--tRNA ligase n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67511contigH-elongata_contig67511:109..2073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score350.5
Seed ortholog evalue6.2e-94
Seed eggNOG ortholog2880.D7FJG6
Preferred namePRMT7
KEGG rclassRC00003,RC00055,RC00523,RC02120
KEGG koko:K01880,ko:K11438
KEGG ReactionR03654,R11216
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0000166,GO:0000287,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000902,GO:0000904,GO:0000959,GO:0001650,GO:0002164,GO:0002181,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0004081,GO:0004551,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006082,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006325,GO:0006349,GO:0006351,GO:0006353,GO:0006355,GO:0006396,GO:0006397,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006464,GO:0006479,GO:0006518,GO:0006520,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007399,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008380,GO:0008469,GO:0008757,GO:0008796,GO:0009058,GO:0009059,GO:0009117,GO:0009165,GO:0009345,GO:0009653,GO:0009791,GO:0009889,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010556,GO:0012505,GO:0015959,GO:0015960,GO:0015965,GO:0015966,GO:0016043,GO:0016070,GO:0016071,GO:0016273,GO:0016274,GO:0016277,GO:0016358,GO:0016462,GO:0016569,GO:0016570,GO:0016571,GO:0016594,GO:0016597,GO:0016740,GO:0016741,GO:0016787,GO:0016817,GO:0016818,GO:0016874,GO:0016875,GO:0017076,GO:0018130,GO:0018193,GO:0018195,GO:0018216,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019637,GO:0019752,GO:0019918,GO:0019919,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030030,GO:0030097,GO:0030141,GO:0030154,GO:0030182,GO:0030424,GO:0030554,GO:0031175,GO:0031323,GO:0031326,GO:0031406,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032989,GO:0032990,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034969,GO:0035166,GO:0035167,GO:0035241,GO:0035242,GO:0035243,GO:0035246,GO:0035247,GO:0035639,GO:0036094,GO:0036211,GO:0040029,GO:0042054,GO:0042165,GO:0042221,GO:0042393,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043021,GO:0043038,GO:0043039,GO:0043043,GO:0043046,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043230,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0043985,GO:0044020,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044431,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0044728,GO:0044877,GO:0046483,GO:0046686,GO:0046872,GO:0046983,GO:0048468,GO:0048513,GO:0048534,GO:0048542,GO:0048569,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048732,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051171,GO:0051252,GO:0051276,GO:0051704,GO:0055086,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070062,GO:0070127,GO:0070150,GO:0071514,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:0097458,GO:0097659,GO:0097708,GO:0098791,GO:0099503,GO:0120025,GO:0120036,GO:0120039,GO:0140053,GO:0140096,GO:0140098,GO:0140101,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903506,GO:1903561,GO:2000112,GO:2001141
EggNOG free text desc.peptidyl-arginine methylation, to symmetrical-dimethyl arginine
EggNOG OGsCOG0423@1,COG0500@1,KOG1501@2759,KOG2298@2759
EC2.1.1.321,6.1.1.14
COG Functional cat.Q
BiGG ReactioniMM904.YPR081C,iND750.YPR081C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlycyl-tRNA Synthetase
Ec32 orthologEc-14_006280.1
Exons4
Model size726
Cds size723
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67511.14362.1prot_H-elongata_contig67511.14362.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67511 112..2073 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931066.6227567-UTR-H-elongata_contig67511:108..1111622931066.6227567-UTR-H-elongata_contig67511:108..111Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67511 109..111 +
1691679684.0395598-UTR-H-elongata_contig67511:108..1111691679684.0395598-UTR-H-elongata_contig67511:108..111Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67511 109..111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931066.6412845-CDS-H-elongata_contig67511:111..3041622931066.6412845-CDS-H-elongata_contig67511:111..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67511 112..304 +
1691679684.0545275-CDS-H-elongata_contig67511:111..3041691679684.0545275-CDS-H-elongata_contig67511:111..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67511 112..304 +
1622931066.6555917-CDS-H-elongata_contig67511:794..10081622931066.6555917-CDS-H-elongata_contig67511:794..1008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67511 795..1008 +
1691679684.0655427-CDS-H-elongata_contig67511:794..10081691679684.0655427-CDS-H-elongata_contig67511:794..1008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67511 795..1008 +
1622931066.6703415-CDS-H-elongata_contig67511:1266..14801622931066.6703415-CDS-H-elongata_contig67511:1266..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67511 1267..1480 +
1691679684.0739112-CDS-H-elongata_contig67511:1266..14801691679684.0739112-CDS-H-elongata_contig67511:1266..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67511 1267..1480 +
1622931066.6848063-CDS-H-elongata_contig67511:1971..20731622931066.6848063-CDS-H-elongata_contig67511:1971..2073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67511 1972..2073 +
1691679684.0820568-CDS-H-elongata_contig67511:1971..20731691679684.0820568-CDS-H-elongata_contig67511:1971..2073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67511 1972..2073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67511.14362.1

>prot_H-elongata_contig67511.14362.1 ID=prot_H-elongata_contig67511.14362.1|Name=mRNA_H-elongata_contig67511.14362.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=241bp
MAALEAMSENEEEVLAFQKEMEVNEKATLGEEGFEITKGMCSWTKSTKKI
SEIKYTPSVIEPSFGIGRILYSLLEHSFYVREAKDGDDDGGMKRGVMAFR
PLVAPIKCAVLPLSSQASFMPLCARVMDALGGLHLSAKLDSSGAAVGRRY
ARMDELGVPFGVTVDFQTVEDETVTLRERDSMSQIRMPVADVAPLVTRLV
KEETAWKDCTLKYPMVRDEKGGASDDNDGSALATERTPCAA
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mRNA from alignment at H-elongata_contig67511:109..2073+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67511.14362.1 ID=mRNA_H-elongata_contig67511.14362.1|Name=mRNA_H-elongata_contig67511.14362.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1965bp|location=Sequence derived from alignment at H-elongata_contig67511:109..2073+ (Himanthalia elongata Himel1 dioecious)
GTGATGGCCGCCCTGGAGGCCATGTCGGAAAACGAGGAAGAGGTTCTCGC
GTTCCAGAAAGAGATGGAGGTCAACGAGAAGGCCACCCTTGGGGAGGAGG
GCTTCGAGATCACCAAGGGCATGTGTTCCTGGACCAAGAGCACCAAGAAA
ATATCTGAGATCAAGTACACGCCTAGCGTCATTGAACCCTCCTTCGGTGA
GGGCGTGTTTTCGTGAAGATATTAGAGAACGCCTCCACCCTCCGCTCAGG
AGGGGGGGAGAGGGGGGGGATTAAAATGTCGTCGTGAATTTGTGCAGGAA
ATTTCATGTATTCTTGAGAAATAATTATTGGAGAGAAGATGAGTTTTTAG
CCTCCAGGAGACCTTTCTGGGAGGAGTTTATACGGCTGTTCTTACACGAG
GAGGCGTGTTTCAACGGTAATACACATTGTATCTATACCTTTGGTGCGTG
GTTTCAACGGTAATACATCGACCAATCCTGTCGCCCAAACCTTGCTGCGC
CGTAAGCACTAATCTCGACGTGTGTGTGTGTGTGTATATATATTTATAAA
ATTAAAGATAACCGCGCAATTCGGCCTTGTCATGCCAGTCATTCTATGTG
TGTTTGAGTACGTAGGCTGGCTGCGGGGCTATGTTCACATATTATATTGT
TCCTGATCCATTTGCCTACGCACGCACTGTTCGCAGGCATCGGGCGCATC
CTGTACTCCCTGCTAGAGCACAGCTTCTACGTGAGAGAGGCCAAGGATGG
CGACGACGATGGCGGCATGAAGAGAGGGGTCATGGCATTCCGCCCCTTGG
TGGCGCCCATCAAGTGCGCCGTGCTCCCGCTGAGCTCGCAGGCTTCTTTC
ATGCCGCTCTGCGCACGCGTCATGGACGCCCTGGGTGGCTTGCACCTTAG
GTGATGGACACCACCACTATCAGCGTGGTACAAAAAAAAAAAGTAGGGAT
AACCCCTTCAGTATGTGACGCATGTGATGAATCTGGATCTGGATGTTTGC
AACAGGGGGGTCGTATTTTCGAAAATGTAATGTTCTCTGTTACGAGACCG
AAATTCATGACGAGCAAACATGACAGCGTTAACCCCGTCCCGTCCTCGTC
CCCTTCCTCTCTTTACGTACACACCTCATCACGAATGCCAACTGGGATAT
ATGCTCAGCGCCAAGCTTGATTCGAGCGGGGCCGCGGTCGGCAGGCGGTA
CGCGCGCATGGACGAGCTGGGTGTTCCGTTTGGCGTTACGGTCGACTTCC
AGACGGTGGAAGACGAGACTGTTACGCTGAGGGAGAGGGACAGCATGTCA
CAGATCAGGATGCCGGTGGCCGATGTTGCGCCCCTCGTGACCCGGCTCGT
GAAGGAGGAGACCGCGTGGAAGGTGTGTGTATTTATGAAATTGCACATAA
CCGCGCAATAATCCGGCCCTATACTGTCATGGTATTTAGTTGTTCTAGGC
TACTCTGGATTGATGGTAATAGCATTGATCCTCCCCAATGGGGGATCAAT
CAGACGTGATAGAGGGGTGTGCGTGTTTTTGATAACTTGCTTCCCATTAA
ATCTTCGCGTAGATCCTATCTCTCTCTCTCTCTCTCTCTTGCGTGCTTTC
TCTCGAAGGGCGTCGCGCGACGGCCACGGTCTACTTTATTTGGAGAGTGG
TTGTGGCTCTAGCGACTCAGTGATGTGATGATGGTTCCCCACCGCAATAA
CATCAAGTCTTAGTTCTGGTACATTATAAGAAACAACTTAAGCGGTGAAA
GCGCAAGAGCTTTCGGACGCCCCCCTCGCCCCCCCCGGCCCTCCTCCTGA
AGCTAAATAGTGCTGCTGCCGCTGATGTCACTACCCGCCGCCGTCGTTGC
TGTTATTGGTCAGGACTGCACTCTAAAGTATCCAATGGTTAGAGATGAGA
AAGGTGGTGCGTCAGACGATAACGACGGGAGCGCGCTTGCGACGGAACGC
ACACCCTGTGCTGCA
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Coding sequence (CDS) from alignment at H-elongata_contig67511:109..2073+

>mRNA_H-elongata_contig67511.14362.1 ID=mRNA_H-elongata_contig67511.14362.1|Name=mRNA_H-elongata_contig67511.14362.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1446bp|location=Sequence derived from alignment at H-elongata_contig67511:109..2073+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGCCCTGGAGGCCATGTCGGAAAACGAGGAAGAGGTTCTCGCGTT
CCAGAAAGAGATGGAGGTCAACGAGAAGGCCACCCTTGGGGAGGAGGGCT
TCGAGATCACCAAGGGCATGTGTTCCTGGACCAAGAGCACCAAGAAAATA
TCTGAGATCAAGTACACGCCTAGCGTCATTGAACCCTCCTTCGATGGCCG
CCCTGGAGGCCATGTCGGAAAACGAGGAAGAGGTTCTCGCGTTCCAGAAA
GAGATGGAGGTCAACGAGAAGGCCACCCTTGGGGAGGAGGGCTTCGAGAT
CACCAAGGGCATGTGTTCCTGGACCAAGAGCACCAAGAAAATATCTGAGA
TCAAGTACACGCCTAGCGTCATTGAACCCTCCTTCGGCATCGGGCGCATC
CTGTACTCCCTGCTAGAGCACAGCTTCTACGTGAGAGAGGCCAAGGATGG
CGACGACGATGGCGGCATGAAGAGAGGGGTCATGGCATTCCGCCCCTTGG
TGGCGCCCATCAAGTGCGCCGTGCTCCCGCTGAGCTCGCAGGCTTCTTTC
ATGCCGCTCTGCGCACGCGTCATGGACGCCCTGGGTGGCTTGCACCTTAG
GCATCGGGCGCATCCTGTACTCCCTGCTAGAGCACAGCTTCTACGTGAGA
GAGGCCAAGGATGGCGACGACGATGGCGGCATGAAGAGAGGGGTCATGGC
ATTCCGCCCCTTGGTGGCGCCCATCAAGTGCGCCGTGCTCCCGCTGAGCT
CGCAGGCTTCTTTCATGCCGCTCTGCGCACGCGTCATGGACGCCCTGGGT
GGCTTGCACCTTAGCGCCAAGCTTGATTCGAGCGGGGCCGCGGTCGGCAG
GCGGTACGCGCGCATGGACGAGCTGGGTGTTCCGTTTGGCGTTACGGTCG
ACTTCCAGACGGTGGAAGACGAGACTGTTACGCTGAGGGAGAGGGACAGC
ATGTCACAGATCAGGATGCCGGTGGCCGATGTTGCGCCCCTCGTGACCCG
GCTCGTGAAGGAGGAGACCGCGTGGAAGCGCCAAGCTTGATTCGAGCGGG
GCCGCGGTCGGCAGGCGGTACGCGCGCATGGACGAGCTGGGTGTTCCGTT
TGGCGTTACGGTCGACTTCCAGACGGTGGAAGACGAGACTGTTACGCTGA
GGGAGAGGGACAGCATGTCACAGATCAGGATGCCGGTGGCCGATGTTGCG
CCCCTCGTGACCCGGCTCGTGAAGGAGGAGACCGCGTGGAAGGACTGCAC
TCTAAAGTATCCAATGGTTAGAGATGAGAAAGGTGGTGCGTCAGACGATA
ACGACGGGAGCGCGCTTGCGACGGAACGCACACCCTGTGCTGCAGACTGC
ACTCTAAAGTATCCAATGGTTAGAGATGAGAAAGGTGGTGCGTCAGACGA
TAACGACGGGAGCGCGCTTGCGACGGAACGCACACCCTGTGCTGCA
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