mRNA_H-elongata_contig67462.14356.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67462.14356.1
Unique NamemRNA_H-elongata_contig67462.14356.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67462.14356.1 vs. uniprot
Match: K7ZUA3_ASCNO (Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=K7ZUA3_ASCNO)

HSP 1 Score: 141 bits (355), Expect = 3.060e-37
Identity = 65/91 (71.43%), Postives = 76/91 (83.52%), Query Frame = 1
Query:    1 PPCLGQLSNNDVADQQTQPLLSGSVCPVRDTLDFLDPKERAKVTFKRRVDIAKEELAVGPTCHLNNGDEDNIPDFAGQFHKTLPHDGLGQV 273
            PPCL Q  N ++AD QT+PLLSGSVC VRDT+DFL P +RAK+TFKRR+ IA  ELAVGPTCHLNNGDE N+P F GQFHK+LPHD +G+V
Sbjct:   17 PPCLSQTVN-ELADMQTRPLLSGSVCRVRDTVDFLSPTKRAKITFKRRIGIAAGELAVGPTCHLNNGDEANVPLFDGQFHKSLPHDDVGRV 106          
BLAST of mRNA_H-elongata_contig67462.14356.1 vs. uniprot
Match: D8LTP5_ECTSI (Vanadium-dependent bromoperoxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP5_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 7.640e-36
Identity = 63/93 (67.74%), Postives = 71/93 (76.34%), Query Frame = 1
Query:    1 PPCLGQLSNNDVADQQTQPLLSGSVCPVRDTLDFLDPKERAKVTFKRRVDIAKEELAVGPTCHLNNGDEDNIPDFAGQFHKTLPHDGLGQVRR 279
            PPCLG  SN +   Q T PLLSGSVC VRD+LDFL P ERAKVT ++RVD AKEE  VGPTCH+ NGDE N+PDF GQFHK+LPHD  G V +
Sbjct:   15 PPCLGATSNEE--HQPTHPLLSGSVCRVRDSLDFLSPTERAKVTLQKRVDTAKEEFQVGPTCHITNGDETNVPDFIGQFHKSLPHDKFGTVSK 105          
BLAST of mRNA_H-elongata_contig67462.14356.1 vs. uniprot
Match: A0A3G3BM34_SACJA (Vanadium-dependent bromine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM34_SACJA)

HSP 1 Score: 134 bits (337), Expect = 1.140e-34
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 1
Query:    1 PPCLGQLSNNDVADQQTQPLLSGSVCPVRDTLDFLDPKERAKVTFKRRVDIAKEELAVGPTCHLNNGDEDNIPDFAGQFHKTLPHDGLGQV 273
            PPCLG     D   + TQPLLSGSVC VRD+LDFLDP  RAKVT  +R+ IAK+E +VGPTCH+NNGDE+N+P FAGQFHKTLPHD  GQV
Sbjct:   52 PPCLGY----DEPAEPTQPLLSGSVCRVRDSLDFLDPVPRAKVTLLKRLAIAKDEFSVGPTCHINNGDEENVPLFAGQFHKTLPHDKFGQV 138          
BLAST of mRNA_H-elongata_contig67462.14356.1 vs. uniprot
Match: Q7X9V0_9PHAE (Vanadium-dependent bromoperoxidase 2 n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7X9V0_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 9.720e-33
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 1
Query:    4 PCLGQLSNNDVADQQTQPLLSGSVCPVRDTLDFLDPKERAKVTFKRRVDIAKEELAVGPTCHLNNGDEDNIPDFAGQFHKTLPHDGLGQV 273
            PCLG     +   + TQPLLSG+VC VRD+LDFLDP  RAKVT  +R+ IAK+E++VGPTCH+NNGDE+N+P FAGQ+HKTLPHD  GQV
Sbjct:   53 PCLGY----EEPPEPTQPLLSGNVCRVRDSLDFLDPVPRAKVTLLKRLAIAKDEISVGPTCHVNNGDEENVPLFAGQYHKTLPHDKFGQV 138          
BLAST of mRNA_H-elongata_contig67462.14356.1 vs. uniprot
Match: B7ZGM1_9PHAE (Putative vanadium-dependent bromoperoxidase 3 n=4 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM1_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 3.570e-30
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 PPCLGQLSNNDVADQQTQPLLSGSVCPVRDTLDFLDPKERAKVTFKRRVDIAKEELAVGPTCHLNNGDEDNIPDFAGQFHKTLPHDGLGQV 273
            PPC     +++V  + T PLLSGSVC VRD+LDFLDP +RA VT ++R+ IAK E  VGPTCH+ NGDE+++P FAGQ+HK+LPHD  GQV
Sbjct:   15 PPCFAAGDHDEV--RATLPLLSGSVCRVRDSLDFLDPVQRATVTLEKRLAIAKNEFGVGPTCHITNGDEEDVPLFAGQYHKSLPHDKFGQV 103          
BLAST of mRNA_H-elongata_contig67462.14356.1 vs. uniprot
Match: A0A411NJW8_SACJA (Vanadium-dependent bromoperoxidase (Fragment) n=3 Tax=Saccharina japonica TaxID=88149 RepID=A0A411NJW8_SACJA)

HSP 1 Score: 106 bits (264), Expect = 1.040e-24
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 1
Query:    1 PPCLGQLSNNDVADQQTQPLLSGSVCPVRDTLDFLDPKERAKVTFKRRVDIAKEELAVGPTCHLNNGDEDNIPDF-AGQFHKTLPHDGLGQVRR 279
            PPCLG   +N+   Q  +   SG VC VRD+LDFLDP +RA+VT   R+ IA++E  VGPTCHL NGDEDN     AGQ+HKTLPH+  GQV +
Sbjct:   56 PPCLGAGDSNET--QANKSPASGDVCNVRDSLDFLDPVQRAEVTRANRLAIAEDEFKVGPTCHLTNGDEDNETLLLAGQYHKTLPHNKYGQVNK 147          
BLAST of mRNA_H-elongata_contig67462.14356.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 55.8 bits (133), Expect = 5.410e-7
Identity = 30/63 (47.62%), Postives = 34/63 (53.97%), Query Frame = 1
Query:   88 DTLDFLDPKERAKVTFKRRVDIAKEEL-AVGPTCHLNNGDEDNIPDFAGQFHKTLPHDGLGQV 273
            D  D   P ER    F  RV  AK EL   G  C +NNG+     D A +FHK+LPHD LGQV
Sbjct:    8 DADDPTPPNERDDEAFASRVAAAKRELEGTGTVCQINNGET----DLAAKFHKSLPHDDLGQV 66          
BLAST of mRNA_H-elongata_contig67462.14356.1 vs. uniprot
Match: UPI001359B6F0 (vanadium-dependent haloperoxidase n=1 Tax=Methylicorpusculum oleiharenae TaxID=1338687 RepID=UPI001359B6F0)

HSP 1 Score: 54.7 bits (130), Expect = 1.370e-6
Identity = 25/62 (40.32%), Postives = 34/62 (54.84%), Query Frame = 1
Query:   88 DTLDFLDPKERAKVTFKRRVDIAKEELAVGPTCHLNNGDEDNIPDFAGQFHKTLPHDGLGQV 273
            D LD L   ER K+ ++ R   A          H  NGDE  +P+++GQFHK+LPH+  G V
Sbjct:   21 DELDPLPATERKKLAYEYREHRANMNFLNSSAPHPTNGDESAVPNYSGQFHKSLPHNNNGMV 82          
BLAST of mRNA_H-elongata_contig67462.14356.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 9.060e-6
Identity = 34/88 (38.64%), Postives = 44/88 (50.00%), Query Frame = 1
Query:   31 DVADQQTQPLLSGSVCPVRDTL--DFLD----PKERAKVTFKRRVDIAKEELAVGP-TCHLNNGDEDNIPDFAGQFHKTLPHDGLGQV 273
            D A   ++  L GS+      +  D LD    P ERA     +R++ A+ E      T HLNNGD  +    A  FHK+LPHD LGQV
Sbjct:   42 DTAASPSKDTLKGSLSRKLQVVNDDALDVSGTPAERAANALNQRIEFAETEFTASEGTLHLNNGDRSS----AATFHKSLPHDSLGQV 125          
BLAST of mRNA_H-elongata_contig67462.14356.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 52.4 bits (124), Expect = 9.110e-6
Identity = 28/63 (44.44%), Postives = 32/63 (50.79%), Query Frame = 1
Query:   88 DTLDFLDPKERAKVTFKRRVDIAKEEL-AVGPTCHLNNGDEDNIPDFAGQFHKTLPHDGLGQV 273
            D LD   P  R  V F  R D A+ E    G  C + NG+     D A  FHK+LPHD LGQV
Sbjct:  131 DALDPTAPNRRDNVAFASRRDAARRERDGTGTVCQITNGET----DLATMFHKSLPHDELGQV 189          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67462.14356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
K7ZUA3_ASCNO3.060e-3771.43Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascop... [more]
D8LTP5_ECTSI7.640e-3667.74Vanadium-dependent bromoperoxidase n=2 Tax=Ectocar... [more]
A0A3G3BM34_SACJA1.140e-3469.23Vanadium-dependent bromine peroxidase n=1 Tax=Sacc... [more]
Q7X9V0_9PHAE9.720e-3365.56Vanadium-dependent bromoperoxidase 2 n=2 Tax=Lamin... [more]
B7ZGM1_9PHAE3.570e-3060.44Putative vanadium-dependent bromoperoxidase 3 n=4 ... [more]
A0A411NJW8_SACJA1.040e-2456.38Vanadium-dependent bromoperoxidase (Fragment) n=3 ... [more]
PRXV_ASCNO5.410e-747.62Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
UPI001359B6F01.370e-640.32vanadium-dependent haloperoxidase n=1 Tax=Methylic... [more]
Q4LDE6_9PHAE9.060e-638.64Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
O82433_FUCDI9.110e-644.44Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67462contigH-elongata_contig67462:857..2073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue7.1e-30
Seed eggNOG ortholog2880.D8LTP5
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.8999345-CDS-H-elongata_contig67462:856..9641622931065.8999345-CDS-H-elongata_contig67462:856..964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67462 857..964 +
1691679683.8153572-CDS-H-elongata_contig67462:856..9641691679683.8153572-CDS-H-elongata_contig67462:856..964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67462 857..964 +
1622931065.924727-CDS-H-elongata_contig67462:1899..20731622931065.924727-CDS-H-elongata_contig67462:1899..2073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67462 1900..2073 +
1691679683.8247483-CDS-H-elongata_contig67462:1899..20731691679683.8247483-CDS-H-elongata_contig67462:1899..2073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67462 1900..2073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67462.14356.1prot_H-elongata_contig67462.14356.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67462 857..2073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67462.14356.1

>prot_H-elongata_contig67462.14356.1 ID=prot_H-elongata_contig67462.14356.1|Name=mRNA_H-elongata_contig67462.14356.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
PPCLGQLSNNDVADQQTQPLLSGSVCPVRDTLDFLDPKERAKVTFKRRVD
IAKEELAVGPTCHLNNGDEDNIPDFAGQFHKTLPHDGLGQVRR*
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mRNA from alignment at H-elongata_contig67462:857..2073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67462.14356.1 ID=mRNA_H-elongata_contig67462.14356.1|Name=mRNA_H-elongata_contig67462.14356.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1217bp|location=Sequence derived from alignment at H-elongata_contig67462:857..2073+ (Himanthalia elongata Himel1 dioecious)
CCACCCTGTCTGGGCCAGCTCTCCAACAACGACGTTGCAGACCAGCAGAC ACAACCGCTTTTAAGTGGTAGCGTGTGCCCAGTCAGAGACACCCTTGACT TCCTCGACGTGAGCGCCAAGTCTGACTGAAATGCCCGTCATTGATACCTT ACATGCTACAAAACTAAGTACTTCATGCACTGTAGCTTTCCCCCCACCCT TACACCACACTGCTTAATATGACATAGGTATAGACCACCACGGAGGACCT TTAACCGCACGATCCCTCCTTCGGATTGCGATGGCTGCTATTTAGGTGGT GAAGGCGACATATATTTTGGTCACTATTTTTGTTAGGTGTCAGGACTACC GGTAACTTCAGCTGGTGTGGCCGTACACCTAAACATTTAAAACCAATCCA ACGATGCGGGGGAAATTACTCACCCGTCCCCAATTCGCGGAGAGGAAAGA TAGATTCAACCTCTTCCGGTGACCGTACATAAGAATCCCCGGTTCTATGG CGATCACCCTCCCCTCTCCAAACCGGGGACAATTAAGTGATCCCCTCTCG TCTCTGCATTGGTTTTCCATTACGAACATGTAATGGCGTAAGGCAAACAA TAGAGGCAGAGCAAGTAACGAAGTCCCCAACGAACATTCATTAGAGCGTA CTTGAGCATCACTTCGATCTTCTTCTATGGCAGTTTTTTTATAAAGGAAA CTGATCTAAAGGCTGAAGCAATTACGTGTGGATCCAAGAGCTTGCCACAT TTCACATTCTCTATATATTTTCAGATAATGCGCTCTTTAGCTGAATAGAG ATCGAATTTGCACAAGGGACGTAAGCAAAGCGAAACTTATTCTTCCTGTG AGTGTTGTCCGGAATTGTCCGAATAAATATTGTGCCGCCGAACCACGGTG TGACAATCTTACTTGTACGCATTCTACGTTTAGCGAGAGCCATTGACTTT ATTTCCCCATGACAAAGATAACAGAGTCATAATAATCATCACAACCATCA ACTACACCACCACCCCCCGTATCATTACCATCACATCATATAGCCTAAGG AGCGCGCTAAGGTCACCTTCAAGAGGCGCGTTGATATCGCCAAGGAGGAG CTCGCCGTCGGGCCGACCTGCCACCTCAACAACGGCGATGAAGACAACAT CCCAGACTTCGCGGGACAGTTCCACAAGACCCTCCCGCACGACGGCCTCG GCCAGGTTAGACGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig67462:857..2073+

>mRNA_H-elongata_contig67462.14356.1 ID=mRNA_H-elongata_contig67462.14356.1|Name=mRNA_H-elongata_contig67462.14356.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig67462:857..2073+ (Himanthalia elongata Himel1 dioecious)
CCACCCTGTCTGGGCCAGCTCTCCAACAACGACGTTGCAGACCAGCAGAC
ACAACCGCTTTTAAGTGGTAGCGTGTGCCCAGTCAGAGACACCCTTGACT
TCCTCGACCCACCCTGTCTGGGCCAGCTCTCCAACAACGACGTTGCAGAC
CAGCAGACACAACCGCTTTTAAGTGGTAGCGTGTGCCCAGTCAGAGACAC
CCTTGACTTCCTCGACCCTAAGGAGCGCGCTAAGGTCACCTTCAAGAGGC
GCGTTGATATCGCCAAGGAGGAGCTCGCCGTCGGGCCGACCTGCCACCTC
AACAACGGCGATGAAGACAACATCCCAGACTTCGCGGGACAGTTCCACAA
GACCCTCCCGCACGACGGCCTCGGCCAGGTTAGACGATGACCTAAGGAGC
GCGCTAAGGTCACCTTCAAGAGGCGCGTTGATATCGCCAAGGAGGAGCTC
GCCGTCGGGCCGACCTGCCACCTCAACAACGGCGATGAAGACAACATCCC
AGACTTCGCGGGACAGTTCCACAAGACCCTCCCGCACGACGGCCTCGGCC
AGGTTAGACGATGA
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