mRNA_H-elongata_contig67452.14353.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67452.14353.1
Unique NamemRNA_H-elongata_contig67452.14353.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67452.14353.1 vs. uniprot
Match: D7FMB3_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMB3_ECTSI)

HSP 1 Score: 492 bits (1267), Expect = 4.920e-170
Identity = 267/462 (57.79%), Postives = 311/462 (67.32%), Query Frame = 1
Query:    7 VVKDCVVTPCGHSFCRSCAGDAVSRKHCCPVCQKGVIGGETGLIRNFLVDEVTQALRKASDATDVAYMRLLFESASSTSSPA-------------------------IQPPPIPNHEMNTREAKGKYRGRISPSAD--------------ALSPIEAVLVNRMRDAFLGYQAYYERERAAHEADVISLSAQLEVLENEDARSGFSEAPRETSAGGRKAMALKAAIEDSRVRFASGMEALLKDFDSHASAAVPPPSLLPATVTVIVVSRGVRFDTQLLPTHFPEN----VRSYYASAGDEVKGFGPATRIYLQALSATRTCA-----------------ADSSQSPQIHPIDSLTQTVFSQSPGGRIGAGWALVVDGPVLLASEEVKPCFAREFGQPDKDPLG--RVDYFSCGECKLNWLCAACATHCHHACRDVKPFSLNHLPTWACCYCSKKRARIGCKLA 1206
            +VKDCVVTPCGHSFCRSCAGDAV+RKHCCPVCQ GVIGGE GLIRNFLVDEVT  LR+A++ TDVAYMRLLF++A+  ++ A                         I  PP P          G +RG   P                  LSP+E VLV RMR+AFLGYQ+YY RERAAH A+V  L+AQL  +  E+      +A  ET A  R+A AL+ AI++S  RF +GMEALL+DFD+HA+AA+PPPSLLP TVT+IV SRGVRFDTQLLPTHFPEN    VR++YA++GDEV+GFG  TR+YLQ LSATR                    A  +   Q+HP+   TQTVFSQSPGGR+GAGWALVVDGPVLL SEE+KPCFA EF Q         RVDYFSCG CKLNWLCA+CA HCH  C DVKPF LNHLP WACCYCSKKR+++ CKLA
Sbjct:    1 MVKDCVVTPCGHSFCRSCAGDAVTRKHCCPVCQVGVIGGEAGLIRNFLVDEVTSTLRRATEDTDVAYMRLLFDTAAGGTAGAXXXXXXXXXXXXXHPHVGSDDARFPIGFPPKPPFSA------GNFRGETQPVEQNQPPLPRGVXXXXXXLSPVEEVLVRRMREAFLGYQSYYARERAAHAAEVSDLTAQLSAVRREETTPCQGQA--ETRA--RRAAALQGAIQESEARFNAGMEALLRDFDAHAAAALPPPSLLPCTVTLIVASRGVRFDTQLLPTHFPENIYGKVRAHYAASGDEVRGFGSTTRLYLQPLSATRRAGTGXXXXXXXXXXXXXXXAAVAAEGQVHPLSDATQTVFSQSPGGRVGAGWALVVDGPVLLKSEEIKPCFAVEFAQQQXXXXXXQRVDYFSCGACKLNWLCASCAAHCHGGCGDVKPFMLNHLPNWACCYCSKKRSKLECKLA 452          
BLAST of mRNA_H-elongata_contig67452.14353.1 vs. uniprot
Match: A0A7S4DCD0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCD0_HETAK)

HSP 1 Score: 130 bits (327), Expect = 1.150e-31
Identity = 77/209 (36.84%), Postives = 115/209 (55.02%), Query Frame = 1
Query:  589 SGMEALLKDFDSHASAAVP-PPSLLPATVTVIVVSRG-VRFDTQLLPTHFP----ENVRSYYASAGDEVKGFGPATRIYL-----QALSATRTCAADSSQSPQIHPIDSLTQTVFSQSPGGRIGAGWALVVDGPVLLASEEVKPCFAREFGQPDKDPLGRVDYFSCGECKLNWLCAACATHCHHACRDVKPFSLNHLPTWACCYCSKKR 1182
            +G+  LL D+ +  + A P  P L+PA V V +   G +RF+ QLLPT FP    E ++S++ + GD+V  F   T + L          T   AA   + P    +    + +FSQ+PGGRI +G  L V G + L S++ +PCFA  FG P++       YFSC +C +NW+C++CA  CH    ++     NH P+WACCYC +K+
Sbjct:    1 AGVRLLLADYRAWLARAAPRSPFLVPAQVAVALPGAGGLRFNMQLLPTDFPSVVFEKIQSHFRAIGDQVLAFSTDTELRLLLPGVMENGGTPAVAAAGGRCPLA--VGEGAEPLFSQAPGGRIPSGSILEVIGDIALRSQQRQPCFANSFGTPNQPR--DATYFSCKQCNMNWICSSCAKCCHTD-HELAVHIKNHNPSWACCYCPRKK 204          
BLAST of mRNA_H-elongata_contig67452.14353.1 vs. uniprot
Match: A0A1S3KHH0_LINUN (E3 ubiquitin-protein ligase TRIM39 isoform X1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KHH0_LINUN)

HSP 1 Score: 130 bits (328), Expect = 1.920e-30
Identity = 111/419 (26.49%), Postives = 180/419 (42.96%), Query Frame = 1
Query:    1 LQVVKDCVVTPCGHSFCRSCAGDAVSRKHCCPVCQKGVIGGETGLIRNFLVDEVTQALRKASDATDVAYMRLLFESASSTSSPAIQPPPIPNHEMNTREAKGKYRGRISPSADALSPIEAVLVNRMRDAFLGYQAYYERERAAHEADVISLSAQLEVLENEDARSGFSEAPRETSAGGRKAMALKAAIE-DSRVRFASGMEALLKDFDSHASAAVPPPSLLPATVTVIVVSRGVRF-DTQLLPTHFPENVRSYYAS----AGDEVKGFGPATRIYLQALSATRTCAADSSQSPQIHPIDSLTQTVFSQSPGG-------------RIGAGWAL------VVDGPVLLASEEVKPCFAREFGQPDKDPLGRVDYFSCGECKLNWLCAACATHCHHACRDVKPFSLNHLPTWACCYCSKKR 1182
            +  +KD  +TPCGH +C  C  + V+R+H CP C   +   +  LIR+   DE+        +  +  Y  +L   A+               E N  E         SPS+   SP+E VL + ++ + + ++ YY+  +  H+  +  L A  + L  E    G ++   E           +   E D  +   S M A    +D + +  +P  ++LP  +++ ++ + V   D  L P+   + V  Y  S     GD++  FG   + +         C    S+    + ID +TQ V S   GG             R+   + L      VV G V   S+  K CF+  F   + + + +VDYFSC EC +NW+C  C   CH    ++ P+ +NH PTWACCYC KK+
Sbjct:   26 MSQMKDSHLTPCGHRYCGDCIKECVNRRHKCPCCNNRIRVND--LIRDHQYDELVCLFNSEREKAEKKYFDILINKAA---------------ETNQEE---------SPSS--FSPVENVLKSHVKKSLVAHERYYQELKREHKQKLAQLDADHQRLIEEAKMQGLTDDELEHQIADLSQNYQRHQEELDQELSECSQMVATA--YDRYLTEHIPDLTVLPIKISLCILCKNVTVKDVMLKPSDSLKEVTDYLKSHMEAEGDDIIAFGENVKYF---------CFGPFSK----YSIDEMTQKVQSIEAGGISLPDVTLLEDDTRLILRYGLKPKSTIVVYGSVHCKSDLPKQCFSVNF---EANKVYKVDYFSCKECGINWVCRPCMEVCHKD-HELVPYIMNHQPTWACCYCPKKK 397          
BLAST of mRNA_H-elongata_contig67452.14353.1 vs. uniprot
Match: UPI0003F0E4CC (tripartite motif-containing protein 12A-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0E4CC)

HSP 1 Score: 129 bits (324), Expect = 5.590e-30
Identity = 111/418 (26.56%), Postives = 182/418 (43.54%), Query Frame = 1
Query:    1 LQVVKDCVVTPCGHSFCRSCAGDAVSRKHCCPVCQKGVIGGETGLIRNFLVDEVTQALRKASDATDVAYMRLLFESASSTSSPAIQPPPIPNHEMNTREAKGKYRGRISPSADALSPIEAVLVNRMRDAFLGYQAYYERERAAHEADVISLSAQLEVLENEDARSGFSEAPRETSAGGRKAMALKAAIEDSRVR---FASGME----ALLKDFDSHASAAVPPPSLLPATVTVIVVSRGVRF-DTQLLP----THFPENVRSYYASAGDEVKGFGPATRIYL------QALSATRTCAADSSQSPQIH------PIDSLTQTVFSQSPGGRIGAGWALVVDGPVLLASEEVKPCFAREFGQPDKDPLGRVDYFSCGECKLNWLCAACATHCHHACRDVKPFSLNHLPTWACCYCSKKR 1182
            + V+ +  +TPCGH +C+ C  + V+R+H CP C   V      L+ +   D + Q +R+A +  +  Y   L  +  S +              N+ +    +           SP+E VL   +++    ++ YY+  R          + Q++++E E A S  +E  ++T       + LK   E    R   F S +E     L + +D + +  +P PSLLP  V+++++++ + F D Q+ P    +H  + ++S   S  D +  F    R  L      ++LS T     D  Q   +H      P +      F    G  I      ++ G V   S+  K CFA  F +   D    VDYF+C +C  NW+C  C   CH     V P+ +NH PTWACCYC KK+
Sbjct:   25 MSVLCNTYMTPCGHRYCKECIIECVNRRHKCPCCNTDV-HKVRDLLHDHQFDVLIQNIREAKEMAEKTYFEELIHTVVSNA--------------NSLDVNNSH-----------SPVEEVLKKHLKEGLAAHENYYQELRT-------QCNHQIQMIEKELAGS-TAELQKQTQVQTDFEVKLKDLNEKYEYRKQTFLSELENCGRMLSQAYDRYLTEHLPTPSLLPIKVSLVLLNKEITFSDVQIKPNYSISHIQDILKSKMHSRDDPIITFDDDVRFILVGPFVKRSLSETHQLVNDVVQHEVVHTDVVLLPRNCCPILQFGAKSGSEI------IITGRVKSQSDLPKLCFATTFEEGRGDS---VDYFTCRDCGFNWVCKPCKESCHKDHMTV-PYIMNHHPTWACCYCPKKK 398          
BLAST of mRNA_H-elongata_contig67452.14353.1 vs. uniprot
Match: UPI0018D6AFE7 (uncharacterized protein LOC119745409 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6AFE7)

HSP 1 Score: 124 bits (310), Expect = 1.440e-27
Identity = 99/414 (23.91%), Postives = 175/414 (42.27%), Query Frame = 1
Query:    1 LQVVKDCVVTPCGHSFCRSCAGDAVSRKHCCPVCQKGVIGGETGLIRNFLVDE-VTQALRKASDATDVAYMRLLFESASSTSSPAIQPPPIPNHEMNTREAKGKYRGRISPSADALSPIEAVLVNRMRDAFLGYQAYYERERAAHEADVISLSAQLEVLENEDARSGFSEAPRETSAGGRKAMALKAAIEDSRVRFASGMEALLKDFDSHASAAVPPPSLLPATVTVIVVSRGVRF-DTQLLPTHFPENVRSYYASA----GDEVKGF--GPATRIYLQALSATRTCAADSSQSPQIHPIDSLTQTVFSQSPGG-------RIGAGWALVVDGPVLLASEEVKPCFAREFGQPDKDPLGRVDYFSCGECKLNWLCAACATHCHHACRDVKPFSLNHLPTWACCYCS-KKRARIG 1194
            ++ +    +TPCGH +C  C  + V+R+  CP C   V G +  L  ++  D  ++    + + A D+ +++L+ E+                 E N++E                SPI   L   ++     ++ YY+  +      +  +  Q+E ++        ++  +E          L+   +       +  + L+  +D + +  +P PSLLP TV+V +  + V   D +L P     +++     A    GD +  F       + L  +   R   A+  +   + P D+    V    PGG        +  G  +V+ GP+ L SE  K CFA+ F    KD    +DYF+C +C   W+C +C   CH   + V P+ + H PTWACCYC  KK+ ++G
Sbjct:  113 MERLSQTYITPCGHRYCGKCIKECVNRRSRCPCCNTKVTGDK--LFPDWAFDNLISMVSTEKNKAEDMYFVKLIQEAGHQE-----------KEETNSKEE---------------SPIVGTLQKHLKIGLASHEQYYQDFKREFTQRIQQVDVQMEAVQGGGDDVSMAQRLQE----------LEVKKQSLHTELRTCTQLLVDAYDKYLTDHLPTPSLLPVTVSVRLQGKNVTLPDIKLKPHSSLSDIKEVVTRAMETRGDPIASFPDDKVKFVLLGPIEKGREILAEFLEELSLTPDDTERSEVIRLLPGGCHPVLEFGVKPGSEVVIAGPIKLESEMPKQCFAQTFV---KDKGQSMDYFTCTDCSFKWVCRSCRDFCHKDHQTV-PYVMGHQPTWACCYCPRKKKCQLG 484          
BLAST of mRNA_H-elongata_contig67452.14353.1 vs. uniprot
Match: UPI001454F3BA (uncharacterized protein LOC117295818 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001454F3BA)

HSP 1 Score: 120 bits (302), Expect = 5.960e-27
Identity = 104/412 (25.24%), Postives = 172/412 (41.75%), Query Frame = 1
Query:   25 VTPCGHSFCRSCAGDAVSRKHCCPVCQKGVIGGETGLIRNFLVDEVTQALRKASDATDVAYMRLLFESASSTSSPAIQPPPIPNHEMNTREAKGKYRGRISPSADALSPIEAVLVNRMRDAFLGYQAYYERERAAHEADVISLSAQLEVLENEDARSGFSEAPRETSAGGRKAMALKAAIEDSRVRFASGMEALLKDFDSHASAAVPPPSLLPATVTVIVVSRGVRFDTQLLPTH-----FPENVRSYYASAGDEVKG----------FGP------ATRIYLQALSATRTCAADSSQSPQIHPIDSLTQTVFSQSPGGRIGAGWALVVDGPVLLASEEVKPCFAREFGQPDKDPLGRVDYFSCGECKLNWLCAACATHCHHACRDVKPFSLNHLPTWACCYCS-KKRARIG 1194
            +TPCGH FC  C  + V+R+  CP C K V   +  L  ++  D + + +    +  +  Y   L + A+  S            + N RE               +SPIE  L   ++     ++ Y++  +      V ++ +Q+E L+  +     +    E          L+   +      ++  + L+  +D + +  +P PSLLP  ++V +  + +      L  H       E + S   + GD V             GP       +  ++Q LS      A+ S + ++ P+       F+  PG  +      V+ GPV L SE  K CFA  F   DKD    +DYF+C +C  NW+C  C  +CH   + V P+ L H PTWACCYC  KK+ ++G
Sbjct:   34 ITPCGHRFCGKCIKECVNRRSKCPNCNKKVSADK--LYSDWAFDNLIKMVSVEKNKAENNYFVNLIQEAAHHSG-----------DTNHRE---------------VSPIEGTLQKHLKLGLAAHEQYFQEFKREFTQRVQTVESQIEALQGGEDDETMATCLHE----------LEVKRQGLHAELSTCTQLLVDAYDRYLTDHLPTPSLLPVAISVRLQDKNIVLQDVKLKPHSSLSDIKEAIISKMEARGDPVISSLDDQVQYILLGPFEKGRVISNEFVQELSLAE---AERSDAIRLLPVGCHPVLDFAVKPGSEV------VLVGPVKLESEMPKQCFASTF---DKDKRLSMDYFTCKDCAFNWVCQYCKDYCHKDHQTV-PYILGHQPTWACCYCPRKKKCQLG 394          
BLAST of mRNA_H-elongata_contig67452.14353.1 vs. uniprot
Match: A0A7S2WUB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUB6_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.180e-26
Identity = 107/427 (25.06%), Postives = 163/427 (38.17%), Query Frame = 1
Query:    1 LQVVKDCVVTPCGHSFCRSCAGDAVSRKHCCPVCQKGVIGGETGLIRNFLVDEVTQALRKASDATDVAYMRLLFESASSTSSPAIQPPPIPNHEMNTREAKGKYRGRISPSADALSPIEAVLVNRMRDAFLGYQAYYERERAAHEADVISLSAQLEVLENEDARSGFSEAPRETSAGGRKAMALKAAIEDSRVRFASGMEALLKDFDSHASAAVPPPSLLPATVTVIV---VSRGV----RFDTQLLPTHFPENVRSYYASA---------GDEVKGFGPATRIYLQALSATRTCAADSS-QSPQIHPIDSLTQTVFSQSP----------GGRIGAGWALVVDGPVLLASEEVKPCFAREFGQPDKDPLGRVDYFSCGECKLNWLCAACATHCHHACRDVKPFSLNHLPTWACCYCSKKRARIGCK 1200
            L   KD    PCGHS+CR C  + ++ KH CPVC          L RN  VD V + +  A       Y   + + A      A +   +P    N                D  + +EA+ V  ++ + +G+   ++    AHE          ++LE+ +    +                 + A+E      A+  + LL++F+ H S A+P P+ L  T+ + +      G     R    ++  H     R    +A         G +V       R+ L        C   SS  +P I       Q +F Q P           GR+   +  V      +   +   CFA EF +   DP   V Y+ C  C+LNW+C  CA  CH    DV  +   H+PTWACCYC KK+A   C+
Sbjct:   25 LDTPKDARTAPCGHSYCRGCIEEVLNLKHKCPVCNADA--SVASLTRNIAVDGVAELIEGAVQTGRENYAWRVVQGA------AERDATMPGGAGN----------------DGQAALEAIFVEHLKRSLVGFAELFDTLHRAHERRC------RDILESTEGSDSYR----------------REALEAEAAAHATTKDGLLREFERHLSGALPSPAALATTMNLHINLSTQNGPIPAQRQIVTVMRVHGATTSRDVIEAARKAAVEVLGGQDVVDSISDERLRLVPRDNAAACGGSSSGTTPGIELPPDSAQPLF-QCPEVQRGELGGVSGRLDGAYTNVEVALTAVLRNQTMQCFALEFVEGKGDP---VTYYRCKTCELNWVCECCAGVCHKG-HDVSVYLARHVPTWACCYCYKKKATSKCR 400          
BLAST of mRNA_H-elongata_contig67452.14353.1 vs. uniprot
Match: UPI00035945B5 (uncharacterized protein LOC101855943 isoform X1 n=2 Tax=Aplysia californica TaxID=6500 RepID=UPI00035945B5)

HSP 1 Score: 117 bits (294), Expect = 1.560e-25
Identity = 105/414 (25.36%), Postives = 165/414 (39.86%), Query Frame = 1
Query:    1 LQVVKDCVVTPCGHSFCRSCAGDAVSRKHCCPVCQKGVIGGETGLIRNFLVDEVTQALRKASDATDVAYMRLLFESASSTSSPAIQPPPIPNHEMNTREAKGKYRGRISPSADALSPIEAVLVNRMRDAFLGYQAYYERERAAHEADVISLSAQLEVLEN--EDARSGFSEAPRETSAGGRKAMALKAAIEDSRVRFASGMEALLKDFDSHASAAVPPPSLLPATVTVIVVSRGVRFD-------------TQLLPTHFPE---NVRSYYASAGDEVKGFGPATRIYLQALSATRTCAADSSQSPQIHPIDSLTQTVFSQS--PGGRIGAGWALVVDGPVLLASEEVKPCFAREFGQPDKDPLGRVDYFSCGECKLNWLCAACATHCHHACRDVKPFSLNHLPTWACCYCSKKR 1182
            L  ++  V+TPCGH +C  C  + VSR H CP C   +  G+      F  D +   +    D  +  Y   +F +      PA QP                  GR S      S  E +L   M+++ L +Q Y+E     +         ++ +LEN      S  S  PR+ S        ++A  E+             + FD +    VP    +P TV+V +  + VR D               ++  H  +   +++ +  + G ++  FGP  +     +      A +  QS  I P+   ++ +F  S  PG  I      V+       S+  K CFA  +     D   R DYF C +C + W+C +C   CH     + PF++NH PTWACCYC KK+
Sbjct:   80 LSAIRGAVLTPCGHRYCTRCITEWVSRNHTCPCCNSSLNSGQFYFDVQF--DGLVDVVLSERDKAEEEYYTKIFGNG-----PADQP----------------TFGRKS------SAFEDILKKHMKESMLSHQRYFENLHGEYRR-------KIRLLENGITSGTSLESSLPRDAS--------VEAIKEELTQNLQDSERLAAESFDKYLKDNVPSLEAVPVTVSVYIADKDVRVDGVVISPSDSLSVIKPIIEAHMRQRANDIQCWTDNGGIKLL-FGPLLKSKKYNV---EEAARNLGQSDSIRPLQWDSKLIFQHSMRPGSEI------VLHKVFQSLSDLPKQCFADVY---IPDTPQRCDYFICNKCNVKWICKSCIQSCHEG-HSISPFAMNHCPTWACCYCPKKK 435          
BLAST of mRNA_H-elongata_contig67452.14353.1 vs. uniprot
Match: UPI001EE500A9 (uncharacterized protein LOC124268064 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE500A9)

HSP 1 Score: 115 bits (289), Expect = 3.990e-25
Identity = 103/422 (24.41%), Postives = 171/422 (40.52%), Query Frame = 1
Query:    1 LQVVKDCVVTPCGHSFCRSCAGDAVSRKHCCPVCQKGVIGGETGLIRNFLVDEVTQALRKASDATDVAYMRLLFESASSTSSPAIQPPPIPNHEMNTREAKGKYRGRISPSADALSPIEAVLVNRMRDAFLGYQAYYERERAAHEADVISLSAQLEVLENEDARS-------GFS--EAPRETSAGGRKAMALKAAIEDSRVRFASGMEALLKDFDSHASAAVPPPSLLPATVTVIVVSRGVRFDTQLLP-----THFPENVRSYYASAGDEVKGFGPATRIYL------------QALSATRTCAADSSQSPQIHPIDSLTQTV--FSQSPGGRIGAGWALVVDGPVLLASEEVKPCFAREFGQPDKDPLGRVDYFSCGECKLNWLCAACATHCHHACRDVKPFSLNHLPTWACCYCSKKR 1182
            L  + D + T CGH +C  C  + V R H CP C   V      LI++   D +   +       +  Y   L  SA+++S           ++ + R+               LSP+E VL   +R     ++ Y++  R       +  + +++ LE +  R+       G S  E   +T+    +  + K A+ D   +    ++ +   +D + +  +P  ++LP  V+V +V + ++     +      TH    + +     GD +  +G   R+YL            Q +     C       P IH +    + V  ++  PG  I      VV G     S+  K CF +++ +    P   VDYFSC  C  NW+C +C   CH    DV    LNH PTWACCYC KK+
Sbjct:   27 LNNMTDTMTTACGHRYCGKCIQEWVDRNHTCPCCNSAV--NSVQLIKDHQFDSLIGEVDSEKSKAEANYFDNLINSAANSS-----------NDFSDRK---------------LSPVEEVLKKHLRQGLTAHEKYFQSLR-------LEFAQRMQTLERDTERALQTLMLEGLSPTEVQLQTAVMESRLTSQKDALTD---QLQLCVDRVADAYDRYLTDHIPTLAILPVKVSVYIVDKNLQIPDITIKAFDDITHIQTVIENTLKDRGDPLIRWGCEGRVYLVGPLSGDNRSDLQKVLDDPDCVESF---PDIHLLTWHCRPVLQYNMKPGSEI------VVKGCFKCESDLPKICFVQKYKEQGPHP---VDYFSCKNCGFNWICRSCVQICHQG-HDVSTHVLNHKPTWACCYCPKKK 397          
BLAST of mRNA_H-elongata_contig67452.14353.1 vs. uniprot
Match: UPI000B45B3A0 (E3 ubiquitin-protein ligase TRIM62-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45B3A0)

HSP 1 Score: 114 bits (286), Expect = 1.060e-24
Identity = 100/416 (24.04%), Postives = 170/416 (40.87%), Query Frame = 1
Query:    1 LQVVKDCVVTPCGHSFCRSCAGDAVSRKHCCPVCQKGVIGGETGLIRNFLVDEVTQALRKASDATDVAYMRLLFESASSTSSPAIQPPPIPNHEMNTREAKGKYRGRISPSADALSPIEAVLVNRMRDAFLGYQAYYERERAAHEADVISLSAQLEVLENEDARSGFS--EAPRETSAGGRKAMALKAAIEDSRVRFASGMEALLKDFDSHASAAVPPPSLLPATVTVIVVSRGVRF-DTQLLPTH-----FPENVRSYYASAGDEVKG---------FGPATRI-YLQALSATRTCAADSSQSPQIHPIDSLTQTVFSQS--PGGRIGAGWALVVDGPVLLASEEVKPCFAREF--GQPDKDPLGRVDYFSCGECKLNWLCAACATHCHHACRDVKPFSLNHLPTWACCYCSKKR 1182
            + V+K+ V+T CGH +C  C  + V R H CP C K V    T + ++   D +  A+ +    ++  Y   L  SA S S           H   T                 LSPIE VL + ++++   ++ Y+++ R         L    E    + A  G S  E  ++T+    +    K A++D      S  + + + ++ + ++ +P   ++P  V + ++ + ++  D    P          +V +  A+  D V           FGP  +  + +     R    D      +  +D  ++ V   S  PG  I       + G ++L S+  K CF + F  G P       VDYF C +C   W+C +C   CH    +  P+ +NH P WACCYC KK+
Sbjct:   24 MNVMKETVMTSCGHRYCSRCIKEWVDRNHKCPCCNKAVT--MTEVFKDHQFDCLIDAINQEKTKSEAKYFESLINSAVSES-----------HTTTT-----------------LSPIETVLKDHLKESLASHERYFQKLRNELNDQERRLEVACENTITDLASHGLSQEELTQQTTDLQNRLSHQKEALQD---EMESCTKLVAESYNRYLTSHLPKLDVIPVKVGITILDKNMKVSDVVFKPADRIGDKVKASVEATMAARSDPVGEWPEELHFVLFGPFVKCSHFEMQQMVREILHDGKVYQDVKVLDRQSRPVLEHSMKPGSEIA------IYGKIILESDMPKKCFQQVFEEGNPQS-----VDYFCCKQCAFQWICRSCMEVCHQG-HETVPYIMNHQPAWACCYCPKKK 394          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67452.14353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMB3_ECTSI4.920e-17057.79RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S4DCD0_HETAK1.150e-3136.84Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A1S3KHH0_LINUN1.920e-3026.49E3 ubiquitin-protein ligase TRIM39 isoform X1 n=1 ... [more]
UPI0003F0E4CC5.590e-3026.56tripartite motif-containing protein 12A-like n=1 T... [more]
UPI0018D6AFE71.440e-2723.91uncharacterized protein LOC119745409 n=1 Tax=Patir... [more]
UPI001454F3BA5.960e-2725.24uncharacterized protein LOC117295818 n=1 Tax=Aster... [more]
A0A7S2WUB6_9STRA3.180e-2625.06Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
UPI00035945B51.560e-2525.36uncharacterized protein LOC101855943 isoform X1 n=... [more]
UPI001EE500A93.990e-2524.41uncharacterized protein LOC124268064 n=1 Tax=Halio... [more]
UPI000B45B3A01.060e-2424.04E3 ubiquitin-protein ligase TRIM62-like n=1 Tax=Mi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67452contigH-elongata_contig67452:188..1767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue3.1e-29
Seed eggNOG ortholog10224.XP_006811660.1
KEGG koko:K10695
GOsGO:0000003,GO:0000122,GO:0000151,GO:0000152,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000791,GO:0000792,GO:0000803,GO:0001702,GO:0001739,GO:0003002,GO:0003006,GO:0003674,GO:0003682,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006513,GO:0006807,GO:0006996,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007369,GO:0007389,GO:0008150,GO:0008152,GO:0008270,GO:0009653,GO:0009790,GO:0009798,GO:0009889,GO:0009890,GO:0009892,GO:0009948,GO:0009952,GO:0009987,GO:0010390,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016604,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019904,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031519,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033522,GO:0034708,GO:0035097,GO:0035102,GO:0035518,GO:0036211,GO:0036353,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043433,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0044703,GO:0045892,GO:0045934,GO:0046872,GO:0046914,GO:0048468,GO:0048519,GO:0048523,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051090,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071339,GO:0071535,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.histone H2A ubiquitination
EggNOG OGsKOG0311@1,KOG0311@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-17_003590.1
Exons2
Model size1206
Cds size1206
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.6339333-CDS-H-elongata_contig67452:187..6521622931065.6339333-CDS-H-elongata_contig67452:187..652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67452 188..652 -
1691679683.7489831-CDS-H-elongata_contig67452:187..6521691679683.7489831-CDS-H-elongata_contig67452:187..652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67452 188..652 -
1622931065.6558797-CDS-H-elongata_contig67452:1026..17671622931065.6558797-CDS-H-elongata_contig67452:1026..1767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67452 1027..1767 -
1691679683.7702873-CDS-H-elongata_contig67452:1026..17671691679683.7702873-CDS-H-elongata_contig67452:1026..1767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67452 1027..1767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67452.14353.1prot_H-elongata_contig67452.14353.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67452 188..1767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67452.14353.1

>prot_H-elongata_contig67452.14353.1 ID=prot_H-elongata_contig67452.14353.1|Name=mRNA_H-elongata_contig67452.14353.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=402bp
LQVVKDCVVTPCGHSFCRSCAGDAVSRKHCCPVCQKGVIGGETGLIRNFL
VDEVTQALRKASDATDVAYMRLLFESASSTSSPAIQPPPIPNHEMNTREA
KGKYRGRISPSADALSPIEAVLVNRMRDAFLGYQAYYERERAAHEADVIS
LSAQLEVLENEDARSGFSEAPRETSAGGRKAMALKAAIEDSRVRFASGME
ALLKDFDSHASAAVPPPSLLPATVTVIVVSRGVRFDTQLLPTHFPENVRS
YYASAGDEVKGFGPATRIYLQALSATRTCAADSSQSPQIHPIDSLTQTVF
SQSPGGRIGAGWALVVDGPVLLASEEVKPCFAREFGQPDKDPLGRVDYFS
CGECKLNWLCAACATHCHHACRDVKPFSLNHLPTWACCYCSKKRARIGCK
LA
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mRNA from alignment at H-elongata_contig67452:188..1767-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67452.14353.1 ID=mRNA_H-elongata_contig67452.14353.1|Name=mRNA_H-elongata_contig67452.14353.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1580bp|location=Sequence derived from alignment at H-elongata_contig67452:188..1767- (Himanthalia elongata Himel1 dioecious)
CTTCAGGTCGTGAAAGACTGCGTTGTGACCCCATGCGGTCATAGCTTCTG CCGCTCGTGCGCCGGGGATGCGGTGTCTCGAAAACACTGCTGCCCCGTCT GCCAGAAGGGCGTGATTGGCGGGGAGACGGGTCTGATTCGCAACTTTCTT GTGGACGAGGTCACGCAAGCACTTCGCAAGGCTTCAGACGCCACCGACGT CGCCTATATGCGTCTGCTGTTCGAAAGCGCGTCATCCACCTCATCTCCTG CAATCCAACCACCCCCCATCCCAAACCACGAGATGAATACCAGAGAAGCA AAGGGAAAATACCGAGGAAGAATTTCACCTTCTGCAGACGCGTTGTCCCC GATCGAAGCGGTGCTCGTCAACCGCATGCGGGACGCCTTCCTGGGGTATC AGGCGTACTATGAGCGCGAACGCGCCGCGCACGAAGCAGATGTTATCTCC CTGTCCGCACAGCTGGAGGTCTTGGAGAACGAGGACGCGCGCTCTGGCTT TAGCGAAGCACCCAGGGAGACCAGTGCCGGGGGGCGTAAGGCGATGGCGT TAAAGGCGGCGATCGAGGACAGCAGGGTGCGCTTTGCGTCTGGTATGGAG GCGCTTCTGAAGGACTTCGATTCTCATGCTTCCGCCGCTGTTCCACCACC CAGCTTGCTCCCGGCCACAGTTACGGTGATCGTGGTCTCCAGGGGCGTAC GTTTTGACACTCAACTTCTCCCGACCCACTTTCCGGAGAACGTCTACAAC AAGGCGAGGCGCTCGATATGCAATATTTTTCTTATGCCCCCCACCTAATA GATATTCGTAATGTGGCCCCCACTGGACTCGACAATGTATTTCGCCAGTT CTACTTTGCCGTCGTTCGCGAGTTCTTGCGTGTCACTAAAATCAGTTTTG CGTCGTTATCCACCATATCCCCCCCCTCGTGACTGGATGCAGCTGGATCT TGCTTTCTCAGCCACGCAAGCAAACCGTATCCAAGCGTGTATGGCCGTTT GACAACTTTCCCCAAGATTTCACGCGCTCTTTTGAGTGTTGCACGTTTTA TTTCGCATTTGAGTTGAAAAATTCGAGCGCTCGGTTGCATGGCCGCTAAC ATGCTGCTGCGGCAGGTGCGAAGCTACTACGCGTCTGCGGGCGACGAGGT GAAGGGCTTCGGCCCGGCGACGCGCATCTATTTGCAGGCGTTATCCGCCA CGAGAACGTGTGCGGCTGACTCCTCGCAGTCGCCTCAAATCCATCCCATC GACTCGCTCACCCAAACGGTTTTCTCCCAGAGCCCTGGAGGTAGAATTGG CGCCGGCTGGGCGCTGGTCGTGGATGGGCCGGTGTTGCTAGCCAGCGAGG AGGTCAAGCCGTGCTTTGCGCGTGAATTCGGCCAGCCCGACAAAGACCCG TTGGGGAGAGTGGATTACTTCAGTTGTGGGGAGTGCAAGCTCAACTGGTT GTGCGCAGCGTGCGCGACTCACTGCCATCACGCCTGCCGCGACGTGAAAC CCTTCTCTCTAAACCACCTACCCACGTGGGCTTGCTGCTACTGCAGCAAG AAAAGGGCAAGAATCGGCTGCAAGCTGGCT
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Coding sequence (CDS) from alignment at H-elongata_contig67452:188..1767-

>mRNA_H-elongata_contig67452.14353.1 ID=mRNA_H-elongata_contig67452.14353.1|Name=mRNA_H-elongata_contig67452.14353.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2412bp|location=Sequence derived from alignment at H-elongata_contig67452:188..1767- (Himanthalia elongata Himel1 dioecious)
CTTCAGGTCGTGAAAGACTGCGTTGTGACCCCATGCGGTCATAGCTTCTG
CCGCTCGTGCGCCGGGGATGCGGTGTCTCGAAAACACTGCTGCCCCGTCT
GCCAGAAGGGCGTGATTGGCGGGGAGACGGGTCTGATTCGCAACTTTCTT
GTGGACGAGGTCACGCAAGCACTTCGCAAGGCTTCAGACGCCACCGACGT
CGCCTATATGCGTCTGCTGTTCGAAAGCGCGTCATCCACCTCATCTCCTG
CAATCCAACCACCCCCCATCCCAAACCACGAGATGAATACCAGAGAAGCA
AAGGGAAAATACCGAGGAAGAATTTCACCTTCTGCAGACGCGTTGTCCCC
GATCGAAGCGGTGCTCGTCAACCGCATGCGGGACGCCTTCCTGGGGTATC
AGGCGTACTATGAGCGCGAACGCGCCGCGCACGAAGCAGATGTTATCTCC
CTGTCCGCACAGCTGGAGGTCTTGGAGAACGAGGACGCGCGCTCTGGCTT
TAGCGAAGCACCCAGGGAGACCAGTGCCGGGGGGCGTAAGGCGATGGCGT
TAAAGGCGGCGATCGAGGACAGCAGGGTGCGCTTTGCGTCTGGTATGGAG
GCGCTTCTGAAGGACTTCGATTCTCATGCTTCCGCCGCTGTTCCACCACC
CAGCTTGCTCCCGGCCACAGTTACGGTGATCGTGGTCTCCAGGGGCGTAC
GTTTTGACACTCAACTTCTCCCGACCCACTTTCCGGAGAACCTTCAGGTC
GTGAAAGACTGCGTTGTGACCCCATGCGGTCATAGCTTCTGCCGCTCGTG
CGCCGGGGATGCGGTGTCTCGAAAACACTGCTGCCCCGTCTGCCAGAAGG
GCGTGATTGGCGGGGAGACGGGTCTGATTCGCAACTTTCTTGTGGACGAG
GTCACGCAAGCACTTCGCAAGGCTTCAGACGCCACCGACGTCGCCTATAT
GCGTCTGCTGTTCGAAAGCGCGTCATCCACCTCATCTCCTGCAATCCAAC
CACCCCCCATCCCAAACCACGAGATGAATACCAGAGAAGCAAAGGGAAAA
TACCGAGGAAGAATTTCACCTTCTGCAGACGCGTTGTCCCCGATCGAAGC
GGTGCTCGTCAACCGCATGCGGGACGCCTTCCTGGGGTATCAGGCGTACT
ATGAGCGCGAACGCGCCGCGCACGAAGCAGATGTTATCTCCCTGTCCGCA
CAGCTGGAGGTCTTGGAGAACGAGGACGCGCGCTCTGGCTTTAGCGAAGC
ACCCAGGGAGACCAGTGCCGGGGGGCGTAAGGCGATGGCGTTAAAGGCGG
CGATCGAGGACAGCAGGGTGCGCTTTGCGTCTGGTATGGAGGCGCTTCTG
AAGGACTTCGATTCTCATGCTTCCGCCGCTGTTCCACCACCCAGCTTGCT
CCCGGCCACAGTTACGGTGATCGTGGTCTCCAGGGGCGTACGTTTTGACA
CTCAACTTCTCCCGACCCACTTTCCGGAGAACGTGCGAAGCTACTACGCG
TCTGCGGGCGACGAGGTGAAGGGCTTCGGCCCGGCGACGCGCATCTATTT
GCAGGCGTTATCCGCCACGAGAACGTGTGCGGCTGACTCCTCGCAGTCGC
CTCAAATCCATCCCATCGACTCGCTCACCCAAACGGTTTTCTCCCAGAGC
CCTGGAGGTAGAATTGGCGCCGGCTGGGCGCTGGTCGTGGATGGGCCGGT
GTTGCTAGCCAGCGAGGAGGTCAAGCCGTGCTTTGCGCGTGAATTCGGCC
AGCCCGACAAAGACCCGTTGGGGAGAGTGGATTACTTCAGTTGTGGGGAG
TGCAAGCTCAACTGGTTGTGCGCAGCGTGCGCGACTCACTGCCATCACGC
CTGCCGCGACGTGAAACCCTTCTCTCTAAACCACCTACCCACGTGGGCTT
GCTGCTACTGCAGCAAGAAAAGGGCAAGAATCGGCTGCAAGCTGGCTGTG
CGAAGCTACTACGCGTCTGCGGGCGACGAGGTGAAGGGCTTCGGCCCGGC
GACGCGCATCTATTTGCAGGCGTTATCCGCCACGAGAACGTGTGCGGCTG
ACTCCTCGCAGTCGCCTCAAATCCATCCCATCGACTCGCTCACCCAAACG
GTTTTCTCCCAGAGCCCTGGAGGTAGAATTGGCGCCGGCTGGGCGCTGGT
CGTGGATGGGCCGGTGTTGCTAGCCAGCGAGGAGGTCAAGCCGTGCTTTG
CGCGTGAATTCGGCCAGCCCGACAAAGACCCGTTGGGGAGAGTGGATTAC
TTCAGTTGTGGGGAGTGCAAGCTCAACTGGTTGTGCGCAGCGTGCGCGAC
TCACTGCCATCACGCCTGCCGCGACGTGAAACCCTTCTCTCTAAACCACC
TACCCACGTGGGCTTGCTGCTACTGCAGCAAGAAAAGGGCAAGAATCGGC
TGCAAGCTGGCT
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