mRNA_H-elongata_contig6745.14352.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6745.14352.1
Unique NamemRNA_H-elongata_contig6745.14352.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6745.14352.1 vs. uniprot
Match: D7FQM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM1_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 4.040e-59
Identity = 94/150 (62.67%), Postives = 115/150 (76.67%), Query Frame = 2 
Query:  149 GQSLLHALHKGKGFPGATAVYAKIRECSMTFALCASADKECLEVAIKANMRRFAALYQDENRIVIIHTDEISTNRRARYNQGTDEIWGLCEQHSPAKSTKFGGVDNLEYISVKLKKGEWHIGAEYTVISASTLGERPYHAIPLVAFDSCK 598
            GQSLLHALHK  GFPGAT VYAKIRE SM FALCASAD ECL  AI AN+ RF +LY+ E R++I+  DE++T +RARY+Q  D I GLC Q +P K+TKFGGV ++E I+  L KGE HIG ++TVIS + LG+RPYHA+PL+AF  C 
Sbjct:    5 GQSLLHALHKAAGFPGATTVYAKIRERSMKFALCASADVECLTAAITANLERFVSLYKGEKRVIILQMDELATEQRARYDQEGDNIVGLCVQCTPRKNTKFGGVSSVEEIAGMLDKGECHIGHQHTVISGAALGDRPYHAVPLLAFAVCN 154
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BLAST of mRNA_H-elongata_contig6745.14352.1 vs. uniprot
Match: D7G6P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P9_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 3.320e-55
Identity = 93/150 (62.00%), Postives = 113/150 (75.33%), Query Frame = 2 
Query:  149 GQSLLHALHKGKGFPGATAVYAKIRECSMTFALCASADKECLEVAIKANMRRFAALYQDENRIVIIHTDEISTNRRARYNQGTDEIWGLCEQHSPAKSTKFGGVDNLEYISVKLKKGEWHIGAEYTVISASTLGERPYHAIPLVAFDSCK 598
            GQ+ LHALHK  GFPGA+ VYAKIRE SM F +CAS +K+CL  AI AN+ RF+ LY  E R+VI+  DEI+T  RARY   TDEI GLC QH+P KSTKF  +DNLE +S +L +G  HIG+E+TVISA  LG+ P+HAIP+VAF SCK
Sbjct:    5 GQTALHALHKAAGFPGASTVYAKIRERSMKFVVCASLEKDCLVAAITANLERFSRLYDGERRVVILEIDEIATEPRARYYGLTDEILGLCVQHTPPKSTKFD-LDNLEDLSGRLNEGHSHIGSEHTVISACALGDTPHHAIPVVAFASCK 153
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BLAST of mRNA_H-elongata_contig6745.14352.1 vs. uniprot
Match: UPI0004622351 (uncharacterized protein n=1 Tax=Trametes versicolor (strain FP-101664) TaxID=717944 RepID=UPI0004622351)

HSP 1 Score: 56.6 bits (135), Expect = 6.370e-6
Identity = 27/84 (32.14%), Postives = 47/84 (55.95%), Query Frame = 2 
Query:  353 DEISTNRRARYNQGTDEIWGLCEQHSPAKSTKFGGVDNLEYISVKLKKG--EWHIGAEYTVISASTLGERPYHAIPLVAFDSCK 598
            D I+  +RA Y++ T+E+ GLC +HS A       +D +++++  L       H+G E TV + +    + YHA+P++   SCK
Sbjct:   45 DGIAVEQRASYSRVTNEVVGLCREHSGALDLHVISLDAIKHVAAALNDEVPTCHLGKECTVAALAPYRAKNYHAVPILVSPSCK 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6745.14352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQM1_ECTSI4.040e-5962.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6P9_ECTSI3.320e-5562.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00046223516.370e-632.14uncharacterized protein n=1 Tax=Trametes versicolo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6745contigH-elongata_contig6745:1045..1645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size601
Cds size369
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.5503757-UTR-H-elongata_contig6745:1044..12761622931065.5503757-UTR-H-elongata_contig6745:1044..1276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6745 1045..1276 +
1691679683.72647-UTR-H-elongata_contig6745:1044..12761691679683.72647-UTR-H-elongata_contig6745:1044..1276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6745 1045..1276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.5766275-CDS-H-elongata_contig6745:1276..16451622931065.5766275-CDS-H-elongata_contig6745:1276..1645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6745 1277..1645 +
1691679683.7358527-CDS-H-elongata_contig6745:1276..16451691679683.7358527-CDS-H-elongata_contig6745:1276..1645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6745 1277..1645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6745.14352.1prot_H-elongata_contig6745.14352.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6745 1277..1645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6745.14352.1

>prot_H-elongata_contig6745.14352.1 ID=prot_H-elongata_contig6745.14352.1|Name=mRNA_H-elongata_contig6745.14352.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
MTFALCASADKECLEVAIKANMRRFAALYQDENRIVIIHTDEISTNRRAR
YNQGTDEIWGLCEQHSPAKSTKFGGVDNLEYISVKLKKGEWHIGAEYTVI
SASTLGERPYHAIPLVAFDSCK*
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mRNA from alignment at H-elongata_contig6745:1045..1645+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6745.14352.1 ID=mRNA_H-elongata_contig6745.14352.1|Name=mRNA_H-elongata_contig6745.14352.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=601bp|location=Sequence derived from alignment at H-elongata_contig6745:1045..1645+ (Himanthalia elongata Himel1 dioecious)
GTTCGAAGGTTGATGAGTCAGGCGCAGCGAGACGGAGTGTCTATGAACGT
AATTTTATATAGACTGGAGCAGGCAGTGACCGGAACGTACAGCGTGGAAG
GATACAGCGAGAAGGACATCGACTTGTCGATATTCGCCATGCGGCTAGGG
ACAATCGCTACTTCATGCGTTGCACAAAGGAAAAGGATTCCCGGGGGCAA
CGGCTGTGTACGCGAAGATCAGGGAATGTTCGATGACGTTCGCCCTATGC
GCATCGGCTGACAAGGAGTGTCTGGAAGTAGCCATCAAGGCGAACATGCG
GCGCTTTGCGGCGCTATACCAGGACGAAAATAGAATCGTGATCATCCACA
CGGACGAGATCTCTACGAATCGGCGTGCAAGATACAATCAAGGAACGGAT
GAGATTTGGGGTTTGTGCGAACAACACTCTCCTGCCAAGAGCACGAAGTT
CGGTGGTGTGGACAACCTTGAATATATTTCGGTCAAGCTCAAGAAGGGGG
AGTGGCACATAGGAGCGGAGTACACAGTCATCTCCGCTTCCACTCTCGGA
GAGCGTCCATACCATGCCATTCCTTTGGTTGCGTTTGACAGCTGCAAATA
G
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Coding sequence (CDS) from alignment at H-elongata_contig6745:1045..1645+

>mRNA_H-elongata_contig6745.14352.1 ID=mRNA_H-elongata_contig6745.14352.1|Name=mRNA_H-elongata_contig6745.14352.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig6745:1045..1645+ (Himanthalia elongata Himel1 dioecious)
ATGACGTTCGCCCTATGCGCATCGGCTGACAAGGAGTGTCTGGAAGTAGC
CATCAAGGCGAACATGCGGCGCTTTGCGGCGCTATACCAGGACGAAAATA
GAATCGTGATCATCCACACGGACGAGATCTCTACGAATCGGCGTGCAAGA
TACAATCAAGGAACGGATGAGATTTGGGGTTTGTGCGAACAACACTCTCC
TGCCAAGAGCACGAAGTTCGGTGGTGTGGACAACCTTGAATATATTTCGG
TCAAGCTCAAGAAGGGGGAGTGGCACATAGGAGCGGAGTACACAGTCATC
TCCGCTTCCACTCTCGGAGAGCGTCCATACCATGCCATTCCTTTGGTTGC
GTTTGACAGCTGCAAATAGATGACGTTCGCCCTATGCGCATCGGCTGACA
AGGAGTGTCTGGAAGTAGCCATCAAGGCGAACATGCGGCGCTTTGCGGCG
CTATACCAGGACGAAAATAGAATCGTGATCATCCACACGGACGAGATCTC
TACGAATCGGCGTGCAAGATACAATCAAGGAACGGATGAGATTTGGGGTT
TGTGCGAACAACACTCTCCTGCCAAGAGCACGAAGTTCGGTGGTGTGGAC
AACCTTGAATATATTTCGGTCAAGCTCAAGAAGGGGGAGTGGCACATAGG
AGCGGAGTACACAGTCATCTCCGCTTCCACTCTCGGAGAGCGTCCATACC
ATGCCATTCCTTTGGTTGCGTTTGACAGCTGCAAATAG
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