mRNA_H-elongata_contig67421.14347.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67421.14347.1
Unique NamemRNA_H-elongata_contig67421.14347.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67421.14347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67421contigH-elongata_contig67421:2237..3329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size646
Cds size624
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67421.14347.1prot_H-elongata_contig67421.14347.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67421 2237..3308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.798518-CDS-H-elongata_contig67421:2236..25701622931064.798518-CDS-H-elongata_contig67421:2236..2570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67421 2237..2570 -
1691679683.4719744-CDS-H-elongata_contig67421:2236..25701691679683.4719744-CDS-H-elongata_contig67421:2236..2570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67421 2237..2570 -
1622931064.8160686-CDS-H-elongata_contig67421:2832..30801622931064.8160686-CDS-H-elongata_contig67421:2832..3080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67421 2833..3080 -
1691679683.4820025-CDS-H-elongata_contig67421:2832..30801691679683.4820025-CDS-H-elongata_contig67421:2832..3080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67421 2833..3080 -
1622931064.8336987-CDS-H-elongata_contig67421:3266..33081622931064.8336987-CDS-H-elongata_contig67421:3266..3308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67421 3267..3308 -
1691679683.5006278-CDS-H-elongata_contig67421:3266..33081691679683.5006278-CDS-H-elongata_contig67421:3266..3308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67421 3267..3308 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.8534052-UTR-H-elongata_contig67421:3308..33291622931064.8534052-UTR-H-elongata_contig67421:3308..3329Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67421 3309..3329 -
1691679683.5130012-UTR-H-elongata_contig67421:3308..33291691679683.5130012-UTR-H-elongata_contig67421:3308..3329Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67421 3309..3329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67421.14347.1

>prot_H-elongata_contig67421.14347.1 ID=prot_H-elongata_contig67421.14347.1|Name=mRNA_H-elongata_contig67421.14347.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp
MIMAIILEGYLAIKLQLLEESASNDHVNVVLGPVTNKESMEIELRRGTFH
SDGGMYPEHQGNSTNMDFGQEDRAPLSAPAHDNHSRIHWRPRKDDTRCKI
GHHFNHEEPGAVAGLPSVGRSRSISMSLVDRTAMEVHRPQGALKGPLTNL
PARNSFVQGDLEILDLASERVIGSPASEKSQSCSQQFASMPGPRGALSSY
GGITGGFG
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mRNA from alignment at H-elongata_contig67421:2237..3329-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67421.14347.1 ID=mRNA_H-elongata_contig67421.14347.1|Name=mRNA_H-elongata_contig67421.14347.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1093bp|location=Sequence derived from alignment at H-elongata_contig67421:2237..3329- (Himanthalia elongata Himel1 dioecious)
CTCGTCTGCGTCCACGCTATTATGATAATGGCCATAATTTTGGAAGGATA
CTTGGCCATTAAGGTAGATGGATAGAGGGGTTGCGCAACGTTACATATTT
CATGAGTAGAACATTACCATGAGGGCCTCAATGTGTATCGAAACCCTAAC
CGATGAAGGAAGAGTCCCCACATCCACATTGCCGAATTCCCCTCTTCAAC
CCCTTTCTTCCTCTTTTGATTTTTTGTGCTACCCGCAACTGTTTCGCAGC
TTCAACTCCTCGAAGAATCGGCCTCGAACGACCACGTTAATGTCGTTCTT
GGCCCGGTGACGAACAAGGAATCTATGGAAATTGAACTTCGACGCGGCAC
ATTCCACAGTGACGGTGGCATGTACCCCGAGCACCAAGGTAACTCGACAA
ATATGGATTTTGGACAAGAGGACCGGGCACCCTTGTCGGCACCAGCGCAC
GACAATCATTCCAGAATACATTGGCGTCCCAGGAAAGACGACACGAGGTA
AGGGGTGGGCATGTCGCCTCCAGAATCGAAGTTAAATGTGTTTTCGATGT
GCTGAAAGCTGTAAAAGTAATATGCCGGGATTCATGCGAACTTCCCCGGA
TGTGTCCACCAATTCCAGCTTCTCCGACGCAGCGTCACCCGCACGTTCTT
ACTGGTTTGTGACGCTCAAACGTTCGTTAAGGTTAAGTGCTTCTAGTAAC
CAAGGATGTGCTTTAAAGCCCTGACTCACCTACAACCCGTTCCTGCCCCA
CCCTTGTAGATGCAAGATTGGTCACCATTTCAATCATGAGGAACCGGGCG
CAGTAGCGGGTCTTCCTTCGGTCGGGCGATCAAGATCTATTTCCATGTCA
TTAGTAGACCGAACGGCGATGGAGGTGCATCGCCCTCAGGGTGCTCTCAA
AGGGCCACTTACCAACCTCCCAGCAAGGAACTCCTTCGTACAAGGGGACC
TCGAGATCTTGGACCTAGCATCTGAACGCGTGATCGGTTCCCCCGCTTCA
GAGAAAAGTCAAAGCTGTTCGCAGCAGTTTGCTTCGATGCCAGGTCCTCG
GGGCGCCTTATCATCATACGGTGGTATCACCGGTGGCTTCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig67421:2237..3329-

>mRNA_H-elongata_contig67421.14347.1 ID=mRNA_H-elongata_contig67421.14347.1|Name=mRNA_H-elongata_contig67421.14347.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1248bp|location=Sequence derived from alignment at H-elongata_contig67421:2237..3329- (Himanthalia elongata Himel1 dioecious)
ATGATAATGGCCATAATTTTGGAAGGATACTTGGCCATTAAGATGATAAT
GGCCATAATTTTGGAAGGATACTTGGCCATTAAGCTTCAACTCCTCGAAG
AATCGGCCTCGAACGACCACGTTAATGTCGTTCTTGGCCCGGTGACGAAC
AAGGAATCTATGGAAATTGAACTTCGACGCGGCACATTCCACAGTGACGG
TGGCATGTACCCCGAGCACCAAGGTAACTCGACAAATATGGATTTTGGAC
AAGAGGACCGGGCACCCTTGTCGGCACCAGCGCACGACAATCATTCCAGA
ATACATTGGCGTCCCAGGAAAGACGACACGAGCTTCAACTCCTCGAAGAA
TCGGCCTCGAACGACCACGTTAATGTCGTTCTTGGCCCGGTGACGAACAA
GGAATCTATGGAAATTGAACTTCGACGCGGCACATTCCACAGTGACGGTG
GCATGTACCCCGAGCACCAAGGTAACTCGACAAATATGGATTTTGGACAA
GAGGACCGGGCACCCTTGTCGGCACCAGCGCACGACAATCATTCCAGAAT
ACATTGGCGTCCCAGGAAAGACGACACGAGATGCAAGATTGGTCACCATT
TCAATCATGAGGAACCGGGCGCAGTAGCGGGTCTTCCTTCGGTCGGGCGA
TCAAGATCTATTTCCATGTCATTAGTAGACCGAACGGCGATGGAGGTGCA
TCGCCCTCAGGGTGCTCTCAAAGGGCCACTTACCAACCTCCCAGCAAGGA
ACTCCTTCGTACAAGGGGACCTCGAGATCTTGGACCTAGCATCTGAACGC
GTGATCGGTTCCCCCGCTTCAGAGAAAAGTCAAAGCTGTTCGCAGCAGTT
TGCTTCGATGCCAGGTCCTCGGGGCGCCTTATCATCATACGGTGGTATCA
CCGGTGGCTTCGGCATGCAAGATTGGTCACCATTTCAATCATGAGGAACC
GGGCGCAGTAGCGGGTCTTCCTTCGGTCGGGCGATCAAGATCTATTTCCA
TGTCATTAGTAGACCGAACGGCGATGGAGGTGCATCGCCCTCAGGGTGCT
CTCAAAGGGCCACTTACCAACCTCCCAGCAAGGAACTCCTTCGTACAAGG
GGACCTCGAGATCTTGGACCTAGCATCTGAACGCGTGATCGGTTCCCCCG
CTTCAGAGAAAAGTCAAAGCTGTTCGCAGCAGTTTGCTTCGATGCCAGGT
CCTCGGGGCGCCTTATCATCATACGGTGGTATCACCGGTGGCTTCGGC
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