mRNA_H-elongata_contig67395.14344.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67395.14344.1
Unique NamemRNA_H-elongata_contig67395.14344.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67395.14344.1 vs. uniprot
Match: D7FJF0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF0_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.490e-32
Identity = 79/175 (45.14%), Postives = 107/175 (61.14%), Query Frame = 2 
Query:   71 AVTMVECCCDMV-EMWIMLLSFADALTDFLYFDKLYRGDEVSEGVAFIVLPFAIFGLVGMLVGPTTQIGLTTAVLLEDVPQIIATTAIEAYLVGGNISRWTAPAIASYVFSVISLQQKFFKIGFAPPI-----PLTQANDEQKPNPV--WVFFCSLLAVIA-SLLVAWAIAAIVI 568
            AV   ECC +   E WI+ LS AD L+DFLYF++LY  + V +GVAF VL FAI GL+  L GP + IG   ++  ED P II TTAI+AYL G ++  W A AI SYVFS+ ++QQK  K+G    I     P  +   + +  P   WV F   LA +A ++L+AWA++A +I
Sbjct:    2 AVPATECCVNCCNETWILALSVADILSDFLYFEELYTENNVPDGVAFAVLGFAIVGLMSFLSGPFSDIGTAVSISFEDFPIIIITTAIQAYLAGADVREWHAVAIVSYVFSMFAMQQKVMKLGLVKSIRDILNPRAEEERQAEIGPCYWWVVFVRSLAAVAFTVLLAWALSAFII 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67395.14344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJF0_ECTSI1.490e-3245.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67395contigH-elongata_contig67395:1207..3329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_006100.1
Exons1
Model size2123
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67395.14344.1prot_H-elongata_contig67395.14344.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67395 1286..1786 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.5974646-UTR-H-elongata_contig67395:1206..12851622931064.5974646-UTR-H-elongata_contig67395:1206..1285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67395 1207..1285 +
1691679683.405206-UTR-H-elongata_contig67395:1206..12851691679683.405206-UTR-H-elongata_contig67395:1206..1285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67395 1207..1285 +
1622931064.6291544-UTR-H-elongata_contig67395:1786..33291622931064.6291544-UTR-H-elongata_contig67395:1786..3329Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67395 1787..3329 +
1691679683.4221447-UTR-H-elongata_contig67395:1786..33291691679683.4221447-UTR-H-elongata_contig67395:1786..3329Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67395 1787..3329 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.6134014-CDS-H-elongata_contig67395:1285..17861622931064.6134014-CDS-H-elongata_contig67395:1285..1786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67395 1286..1786 +
1691679683.4130447-CDS-H-elongata_contig67395:1285..17861691679683.4130447-CDS-H-elongata_contig67395:1285..1786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67395 1286..1786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67395.14344.1

>prot_H-elongata_contig67395.14344.1 ID=prot_H-elongata_contig67395.14344.1|Name=mRNA_H-elongata_contig67395.14344.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
MVECCCDMVEMWIMLLSFADALTDFLYFDKLYRGDEVSEGVAFIVLPFAI
FGLVGMLVGPTTQIGLTTAVLLEDVPQIIATTAIEAYLVGGNISRWTAPA
IASYVFSVISLQQKFFKIGFAPPIPLTQANDEQKPNPVWVFFCSLLAVIA
SLLVAWAIAAIVIAAT*
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mRNA from alignment at H-elongata_contig67395:1207..3329+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67395.14344.1 ID=mRNA_H-elongata_contig67395.14344.1|Name=mRNA_H-elongata_contig67395.14344.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2123bp|location=Sequence derived from alignment at H-elongata_contig67395:1207..3329+ (Himanthalia elongata Himel1 dioecious)
CTCGACGGTGGCGACGGTCGACGCGGACGGCAAAAGAAAGAAACCGGTTC
TCAGCGAGAGCTATGCTGGTGCCGTCACCATGGTGGAGTGTTGCTGTGAC
ATGGTGGAAATGTGGATCATGCTCCTCTCCTTCGCCGATGCGCTGACGGA
CTTCCTCTACTTCGACAAGCTCTACCGGGGAGACGAGGTGTCCGAGGGCG
TGGCCTTCATCGTGCTACCCTTCGCCATCTTCGGTCTGGTGGGGATGCTG
GTCGGGCCCACGACTCAGATCGGGCTCACAACCGCGGTGCTCCTTGAGGA
CGTTCCTCAGATCATTGCGACGACGGCGATCGAAGCCTACTTGGTCGGTG
GGAACATCAGCAGGTGGACCGCGCCGGCAATCGCGAGCTACGTGTTCTCG
GTGATCTCCTTACAGCAGAAGTTCTTCAAGATAGGTTTCGCTCCCCCTAT
TCCCCTCACACAGGCTAACGACGAGCAAAAGCCTAATCCTGTCTGGGTGT
TTTTCTGTTCTCTGTTGGCCGTCATCGCTTCCTTGTTGGTGGCCTGGGCG
ATCGCCGCGATCGTCATTGCCGCCACTTGAGAGGGTTTATGGCTCGGCGT
TCACGCAATAGATGCGTAACATGGCGGTCAACCCTAAACGTCCTGCGATC
TAAGCGTGTGAAATGCGTCGAGGATGACCGACCGCCGCGTGAGGGTATGC
TCCCGTTTCATGGTCATGGTCTGGGCCACCAAGGATAGATACGGGCGAAC
CTGGAGCACTCTCACCGTAAGGCGGGGGCGAATTTCGGGATCCGTCGTTT
GATTTTCACCCACCCCATTGTTCGGATGACCCCCCCCCCCGCTCTCCCGA
CCTCCTACCAATGCTCGCCATCCATGGTCCGATTGGGCTGGGAGCGGGTA
GATCAATGAGGCGGCGTTGAAATTGTTCCTTTTTGCGTGTCGTCGTCCTT
TTAAGTTTAAATTACTCTCGGTTCCTGCGTTCGCTTAGTCTCGGACGGGG
TTCGAAGGAATAGACCATTTTGGAGCGTTTTTAGTGCCACTGTCTGGGTA
GCTCTAAAGTAGCCGCAGTTGCAGCAGTAGTAGTCCCGGTACGCTGTGTG
CGACAGATCATCGTCCTCCGATCGATTCAGGATATTGCTTTACTGTTAAT
TAAGAACGAACAAAGTGCGCGTTCCGGAAGCCACGTTCGGGTATGAGGTT
AATCGAAGGCGCGTGAGGTCATTTCCCCTGTATGATATTGTTTGTTGTGG
AGGCGTTGGGGGTATAGAGAGAGGGTGGATGAAAATTTATTCCGTGTCTA
CCGGAAAATATCGCGTCCCAAACAAAAGCATGTATGTACTGTGCCGAGCA
CGCGTGGGTCGGGCGTTATCGATGGTCCTTTAATTGAAGGTCGAAGGTTG
TGAACCCGTCGAAGCCTTTTAATGGGTCTATGTCGAAGAATTTGGTGCGC
GGCTTCCCTTGTGCACCAGGTGTTGCTTGTTGCTGTAGTACCCATGTTGT
GTGGTGTCCAAGCTGTGTGAAAAAAGAGAGGTAGGTGTCGTCAGACGCCG
TTCTGTGTGTATATATATATATATTAACGCACATATATTTATTTATTTAT
TTTTGGACTCAAAAAAAGACCTTAAATTTTCCATCGTAAAGGCGGCAAAT
ATTGGGGGTCTACTGGCGGCTATCTCCGTGTTGGTGTGTTGGGCTTCGTG
GGGTGTAACGTACGCTTTGGTTCTCCAACGTGTGTAGGCGTGTTTGACGA
ATCTGAGCCGGATTGTCCCAAAAATATAAAATATGGTATGGTGTGCGGTA
CCTACAAGCGATTGATTCTGTCCCCGAGCAGTACTTGCAGTGCGTCGTAG
TAGCATTACCTCTGCCTTTGCCTCGCGTAGCCCTCGTTCTCTGTTGATGG
CCACGACAAATACAACGTGATTTCACTTTGAAATGTCTAAAAGTGATCTA
CGCTATACTGTACGTCACCATTATTACTGTAGTCTTCACAGCTGGCTTCT
TCGCCCTGGGCGGGTGGGAGCATCGTTTTTTCCTGGGTTTCTCTCATCAA
GTGCGCTCCAGCCGGTCGCCCCGGTGGTGTAAGGGTCAAGCCGTCTTCCT
TGATCCCCGGAAGTAGTGAGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig67395:1207..3329+

>mRNA_H-elongata_contig67395.14344.1 ID=mRNA_H-elongata_contig67395.14344.1|Name=mRNA_H-elongata_contig67395.14344.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig67395:1207..3329+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGAGTGTTGCTGTGACATGGTGGAAATGTGGATCATGCTCCTCTC
CTTCGCCGATGCGCTGACGGACTTCCTCTACTTCGACAAGCTCTACCGGG
GAGACGAGGTGTCCGAGGGCGTGGCCTTCATCGTGCTACCCTTCGCCATC
TTCGGTCTGGTGGGGATGCTGGTCGGGCCCACGACTCAGATCGGGCTCAC
AACCGCGGTGCTCCTTGAGGACGTTCCTCAGATCATTGCGACGACGGCGA
TCGAAGCCTACTTGGTCGGTGGGAACATCAGCAGGTGGACCGCGCCGGCA
ATCGCGAGCTACGTGTTCTCGGTGATCTCCTTACAGCAGAAGTTCTTCAA
GATAGGTTTCGCTCCCCCTATTCCCCTCACACAGGCTAACGACGAGCAAA
AGCCTAATCCTGTCTGGGTGTTTTTCTGTTCTCTGTTGGCCGTCATCGCT
TCCTTGTTGGTGGCCTGGGCGATCGCCGCGATCGTCATTGCCGCCACTTG
AATGGTGGAGTGTTGCTGTGACATGGTGGAAATGTGGATCATGCTCCTCT
CCTTCGCCGATGCGCTGACGGACTTCCTCTACTTCGACAAGCTCTACCGG
GGAGACGAGGTGTCCGAGGGCGTGGCCTTCATCGTGCTACCCTTCGCCAT
CTTCGGTCTGGTGGGGATGCTGGTCGGGCCCACGACTCAGATCGGGCTCA
CAACCGCGGTGCTCCTTGAGGACGTTCCTCAGATCATTGCGACGACGGCG
ATCGAAGCCTACTTGGTCGGTGGGAACATCAGCAGGTGGACCGCGCCGGC
AATCGCGAGCTACGTGTTCTCGGTGATCTCCTTACAGCAGAAGTTCTTCA
AGATAGGTTTCGCTCCCCCTATTCCCCTCACACAGGCTAACGACGAGCAA
AAGCCTAATCCTGTCTGGGTGTTTTTCTGTTCTCTGTTGGCCGTCATCGC
TTCCTTGTTGGTGGCCTGGGCGATCGCCGCGATCGTCATTGCCGCCACTT
GA
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