mRNA_H-elongata_contig67298.14338.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67298.14338.1
Unique NamemRNA_H-elongata_contig67298.14338.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67298.14338.1 vs. uniprot
Match: D7FRK8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK8_ECTSI)

HSP 1 Score: 449 bits (1155), Expect = 5.600e-151
Identity = 224/313 (71.57%), Postives = 249/313 (79.55%), Query Frame = 1
Query:   10 EDFEAVCLKAVQPGDTCILESGDHLNDGLTVTHGTEDARITITGESGACIKGSNTQDRVLQIAHNYYTIEDLCFDGGHGSEN---VATGIYVLGADWKNDLNMNGVEIKSSVTGLQMFDLEIKNFGSECVHFRYSVTWAEVQGCTIQHCGIEAFENGEGGKVGEAIYLGTALDQ----------IRSAGADNVDADNCGYNWIHHNTIRTYGNECVDVKEGSANNLIEHNVCEQQEDPNSGCFGLRGSDNTVRWNEIAECKGAGIRVGGDRSFGTNNNIYGNTIKNANAGAFSVHSPDQGTVCENDISGVDKI 909
            EDFEAVCLK V+PGD+C L  GD+ +DG+T THGT DA ITITG+S ACIKGSNTQDRVLQIAH+YY +E +CFDG H  +N   VAT IYVLGAD K+    NGV   SSVTG +M DLEIKNFGSECVHFRY VT +EV GCTIQHCG+EAFE+G GGKVGE IY+GTALDQ          IR+  ADNVDAD C YNWIHHNT RTYGNECVDVKEGSA+NLIEHNVCEQQ+DPNSGC G RGSDNT R+NEIAEC GAGIRVGGD  FG NN++YGN I++   GAFSV SP+QG VCEN IS VD I
Sbjct:   25 EDFEAVCLKVVEPGDSCYLAKGDYYHDGITSTHGTADAPITITGDSAACIKGSNTQDRVLQIAHDYYIVEGICFDGDHDGDNPPNVATAIYVLGADKKS--TKNGVT--SSVTGFKMIDLEIKNFGSECVHFRYFVTHSEVTGCTIQHCGMEAFEDGGGGKVGEGIYVGTALDQVDDGKAPEVKIRTGSADNVDADECNYNWIHHNTFRTYGNECVDVKEGSAHNLIEHNVCEQQKDPNSGCIGFRGSDNTARFNEIAECLGAGIRVGGDDDFGENNHLYGNAIQSCGNGAFSVMSPNQGVVCENVISDVDAI 333          
BLAST of mRNA_H-elongata_contig67298.14338.1 vs. uniprot
Match: A0A6H5KRG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG5_9PHAE)

HSP 1 Score: 431 bits (1107), Expect = 5.470e-144
Identity = 214/301 (71.10%), Postives = 238/301 (79.07%), Query Frame = 1
Query:   10 EDFEAVCLKAVQPGDTCILESGDHLNDGLTVTHGTEDARITITGESGACIKGSNTQDRVLQIAHNYYTIEDLCFDGGHGSENVATGIYVLGADWKNDLNMNGVEIKSSVTGLQMFDLEIKNFGSECVHFRYSVTWAEVQGCTIQHCGIEAFENGEGGKVGEAIYLGTALDQIRSAGADNVDADNCGYNWIHHNTIRTYGNECVDVKEGSANNLIEHNVCEQQEDPNSGCFGLRGSDNTVRWNEIAECKGAGIRVGGDRSFGTNNNIYGNTIKNANAGAFSVHSPDQGTVCENDISGVDKIV 912
            +DFEA CLK V+PGDTC LE GD+++DGLTVTHGTED RITITG+  ACIKGSNTQDRV+QIAH+YYTIE +CFDG HG ENVAT IYVLGAD K+  N       SSVTGL+MFDLEIKNF SECVHFRY VT AEV GCTIQ          + GK  E         ++R+  ADNVDAD CGYNWIHHNT RTYGNECVD+KEGSANNL+EHNVCEQQ DPNSGCFG RGSDNT RWNEIAECKGAGIRVGG+  +G  N++YGNTIKNA  GAF+V SP+QGTVCEN ISG+D IV
Sbjct:   12 DDFEASCLKVVEPGDTCHLEKGDYVHDGLTVTHGTEDKRITITGDPDACIKGSNTQDRVMQIAHDYYTIEGICFDGHHGDENVATAIYVLGADRKSTKNGE----TSSVTGLEMFDLEIKNFSSECVHFRYFVTHAEVSGCTIQV---------KDGKAPEP--------KLRTGSADNVDADVCGYNWIHHNTFRTYGNECVDIKEGSANNLVEHNVCEQQVDPNSGCFGSRGSDNTFRWNEIAECKGAGIRVGGEDGYGEGNHMYGNTIKNAEKGAFNVMSPNQGTVCENSISGIDLIV 291          
BLAST of mRNA_H-elongata_contig67298.14338.1 vs. uniprot
Match: A0A6H5KWV6_9PHAE (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV6_9PHAE)

HSP 1 Score: 397 bits (1020), Expect = 3.580e-131
Identity = 200/300 (66.67%), Postives = 223/300 (74.33%), Query Frame = 1
Query:   10 EDFEAVCLKAVQPGDTCILESGDHLNDGLTVTHGTEDARITITGESGACIKGSNTQDRVLQIAHNYYTIEDLCFDGGHGSENVATGIYVLGADWKNDLNMNGVEIKSSVTGLQMFDLEIKNFGSECVHFRYSVTWAEVQGCTIQHCGIEAFENGEGGKVGEAIYLGTALDQIRSAGADNVDADNCGYNWIHHNTIRTYGNECVDVKEGSANNLIEHNVCEQQEDPNSGCFGLRGSDNTVRWNEIAECKGAGIRVGGDRSFGTNNNIYGNTIKNANAGAFSVHSPDQGTVCENDISGVDKI 909
            EDFEAVCLK V+PGD C L  GD+ +DG+T  HGTEDA ITITG S ACIKGSNTQDRVLQIAH+YY ++ LCFDG H  +NVAT IYVLGAD K+    NGV   SSVTGL++ DLEI+NFGSEC+HFRY VT +EV GCTIQ   ++                      IR+  ADNVDAD C YNWIHHNT RTYGNECVDVKEGSA NLIEHNVCEQQ+D NSGC G RGSDNT R+N+IAEC GAGIRVGGD  FG  NN+YGN I+N   GAFSV SP+QG VCEN ISGVD I
Sbjct:   20 EDFEAVCLKVVEPGDKCNLAKGDYYHDGITAVHGTEDAPITITGHSEACIKGSNTQDRVLQIAHDYYIVDGLCFDGEHDGDNVATAIYVLGADEKS--TKNGVT--SSVTGLKLLDLEIRNFGSECIHFRYFVTHSEVTGCTIQAPEVK----------------------IRTGSADNVDADECNYNWIHHNTFRTYGNECVDVKEGSAYNLIEHNVCEQQQDANSGCIGFRGSDNTARFNDIAECTGAGIRVGGDNGFGEGNNMYGNGIQNCGNGAFSVMSPNQGVVCENVISGVDAI 293          
BLAST of mRNA_H-elongata_contig67298.14338.1 vs. uniprot
Match: D7FKG0_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG0_ECTSI)

HSP 1 Score: 394 bits (1012), Expect = 5.300e-129
Identity = 188/313 (60.06%), Postives = 228/313 (72.84%), Query Frame = 1
Query:    1 SPDEDFEAVCLKAVQPGDTCILESGDHLNDGLTVTHGTEDARITITGESGACIKGSNTQDRVLQIAHNYYTIEDLCFDGGH--GSENVATGIYVLGADWKNDLNMNGVEIKSSVTGLQMFDLEIKNFGSECVHFRYSVTWAEVQGCTIQHCGIEAFENGEGGKVGEAIYLGTALDQI----------RSAGADNVDADNCGYNWIHHNTIRTYGNECVDVKEGSANNLIEHNVCEQQEDPNSGCFGLRGSDNTVRWNEIAECKGAGIRVGGDRSFGTNNNIYGNTIKNANAGAFSVHSPDQGTVCENDISGVD 903
            SP +D+E  CLK VQPGDTC   SGDH  DG+T  HGTE  RIT+TG+S AC+KGSNTQDR+ QIAH+YYT++D+CFDG H    E V++ IY+LGAD     + NG   K+SVTG Q+FDLEIKNF  EC+HFRY VT  EV GCT+QHCG  +FE G GGKVGE IY+GTALDQ+          R+  ADN+DAD   +NWIHHNT RTYGNECVD+KEGS  NL+E+N+CEQQ D NSGCFG RGS NT RWN+I+ C GAG R GGD  +G +NN YGN I +A  GA++V +  QG +C+N  S +D
Sbjct:   16 SPGDDYEETCLKMVQPGDTCYFLSGDHKFDGMTQVHGTEKNRITLTGDSDACLKGSNTQDRLFQIAHDYYTVKDICFDGYHEDDDEYVSSAIYILGADKARKKDSNGE--KASVTGTQLFDLEIKNFDEECIHFRYFVTQTEVSGCTVQHCGKHSFEEGGGGKVGEGIYIGTALDQVDDNKTPEPKLRTVSADNIDADVTKHNWIHHNTFRTYGNECVDIKEGSRENLVEYNICEQQHDANSGCFGSRGSANTFRWNKISHCVGAGFRFGGDADYGVDNNAYGNEINDAAYGAYNVMAYPQGQICKNKHSDID 326          
BLAST of mRNA_H-elongata_contig67298.14338.1 vs. uniprot
Match: D7FZ38_ECTSI (Secreted protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ38_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 5.750e-77
Identity = 120/162 (74.07%), Postives = 134/162 (82.72%), Query Frame = 1
Query:  439 QHCGIEAFENGEGGKVGEAIYLGTALDQ-----IRSAGADNVDADNCGYNWIHHNTIRTYGNECVDVKEGSANNLIEHNVCEQQEDPNSGCFGLRGSDNTVRWNEIAECKGAGIRVGGDRSFGTNNNIYGNTIKNANAGAFSVHSPDQGTVCENDISGVDKI 909
            QHCGI+  ENGEGGKVGEAIY+GTAL Q     +R+  ADNVDAD CGYNWIHHN  RTYGNECVD+KEGSANNL+E+NVCEQQ DPNSGC G RGSDNT RWNEIAECKGAGIRVGG+  +G  N+++G TIKNA  GAF+V SP+QGTVCE  ISGVD I
Sbjct:    4 QHCGIDTSENGEGGKVGEAIYVGTALSQAPEPKLRTGSADNVDADVCGYNWIHHNAFRTYGNECVDIKEGSANNLVENNVCEQQFDPNSGCVGSRGSDNTFRWNEIAECKGAGIRVGGEDGYGEGNHMHGKTIKNAEKGAFNVMSPNQGTVCETSISGVDLI 165          
BLAST of mRNA_H-elongata_contig67298.14338.1 vs. uniprot
Match: A0A2W4MJI7_9CHLR (DUF1565 domain-containing protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W4MJI7_9CHLR)

HSP 1 Score: 225 bits (573), Expect = 1.230e-67
Identity = 122/303 (40.26%), Postives = 170/303 (56.11%), Query Frame = 1
Query:    1 SPDEDFEAV--CLKAVQPGDTCILESGDHLNDGLTVTHGTEDARITITGESGACIKGSNTQDRVLQIAHNYYTIEDLCFDGGHGSENVATGIYVLGADWKNDLNMN-GVEIKSSVTGLQMFDLEIKNFGSECVHFRYSVTWAEVQGCTIQHCGIEAFENGEGGKVGEAIYLGTALDQIRSAGADNVDADNCGYNWIHHNTIRTYGNECVDVKEGSANNLIEHNVCEQQEDPNSGCFGLRGSDNTVRWNEIAECKGAGIRVGGDRSF-GTNNNIYGNTIKNANAGAFSVHSPDQGTVCENDISG 897
            SP   F+ +   ++  QPGD   L  G++  D ++  +GT  A ITITG + A +KG   + R+ QI+H+Y T+     DG HG+ N   G       +++ L    G E ++ VTG+++ ++  KN G ECV  RY     E+   T  +CG+  F    GGK GEAIY+GTA +Q+R       D D    NWIHHNT  T GNECVD+KE S  N++E+N C  Q+DP +  FG RGS N  R+N      GAG+R+GGD S  G NN++YGNTI++   G   V    Q  +C N +SG
Sbjct:   26 SPSAPFKTIQQAIRLAQPGDVINLAPGEYYQDVVSERNGTPTAPITITGPADAVVKGGG-KARIFQISHDYLTLSGFTIDGLHGNPNSPDG-------YRDKLLFAIGTERRAGVTGMRILNMTFKNAGGECVRLRYFAQQNEIAHSTFLNCGVHDFRFNGGGKNGEAIYIGTAPEQLRDGKNPTADPDQSNGNWIHHNTFNTQGNECVDIKEASTGNIVEYNTCTGQKDPEAAGFGSRGSGNVFRYNTSYGNVGAGVRLGGDTSNEGINNDVYGNTIRDNRGGGIKVQRSPQRMICGNIMSG 320          
BLAST of mRNA_H-elongata_contig67298.14338.1 vs. uniprot
Match: A0A561BL56_9ACTN (Parallel beta-helix repeat protein n=1 Tax=Kribbella amoyensis TaxID=996641 RepID=A0A561BL56_9ACTN)

HSP 1 Score: 207 bits (526), Expect = 4.770e-61
Identity = 126/287 (43.90%), Postives = 158/287 (55.05%), Query Frame = 1
Query:   55 TCILESGDHLNDGLTVTHGTEDARITITGESGACIKGSNTQDRVLQIAHNYYTIEDLCFDGGHGSENVATG-----IYVLGADWKNDLNMNGVEIKSSVTGLQMFDLEIKNFGSECVHFRYSVTWAEVQGCTIQHCGIEAFENGEGGKVGEAIYLGTALDQIRSAGADNVDADNCGYNWIHHNTIRTYGNECVDVKEGSANNLIEHNVCEQQEDPNSGCFGLRGSDNTVRWNEIAECKGAGIRVGGDRSF-GTNNNIYGNTIKNANAGAFSVHSPDQGTVCENDISG 897
            T  L  G +  D +TV  G     +T+TG S A +KG+    R+ Q+ H+  T++    DG HGS   A+G     IYV+                  V  L + D+ +KN G ECV  RY VT A+V   TI  CG+  F+   GGK GE IYLGTA +Q    GA +   D    N IHHNTI T GNECVDVKE S  N+IE+N C QQ+D +SG    RGS NT R+N I +  GAG+R+GGD +  GTN N+YGNTIKN  AG        QG VC N +SG
Sbjct:   65 TVHLAPGTYRQDAVTVRSG-----VTVTGPSTAVVKGAGNS-RIFQVLHDGVTLDGFTVDGLHGSSTSASGYRDKLIYVM-----------STSPGDGVGTLTISDMTLKNAGGECVRLRYLVTNADVHDNTIGPCGVYDFKFAGGGKNGEGIYLGTAPEQQGQNGAPDDQPDRSRNNRIHHNTIATAGNECVDVKENSTANVIEYNDCSQQKDASSGGLDARGSGNTFRYNTIHDNTGAGVRLGGDTATDGTNTNVYGNTIKNNAAGGIKFMRTPQGQVCGNTMSG 334          
BLAST of mRNA_H-elongata_contig67298.14338.1 vs. uniprot
Match: B5LWC7_9PHYC (Putative nosD copper-binding protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWC7_9PHYC)

HSP 1 Score: 212 bits (540), Expect = 1.780e-60
Identity = 116/300 (38.67%), Postives = 173/300 (57.67%), Query Frame = 1
Query:    1 SPDEDFEAVCLKAVQPGDTCILESGDHLNDGLTVTHGTEDARITITGESGACIKGSNTQDRVLQIAHNYYTIEDLCFDGGHGSENVATG-IYVLGADWKNDLNMNGVEIKSSVTGLQMFDLEIKNFGSECVHFRYSVTWAEVQGCTIQHCGIEAFENGEGGKVGEAIYLGTALDQIRSAGADNVDADNCGYNWIHHNTIRTYGNECVDVKEGSANNLIEHNVCEQQEDPNSGCFGLRGSDNTVRWNEIAECKGAGIRVGG----DRSFGTNNNIYGNTIKNANAGAFSVHSPDQGTVCEN 885
            SP +  +A   KA +PGDT +L  G++  D  +VTHGT D RIT+ G   A ++G+++  RV++I H+Y T+E     G  G E  A   +++LG      +  NG E +SS+ G+ +  ++I++ G EC+  R   T  E+ G  I+ CG + F  G   K GEAIY+GT+ +Q           D   Y W+H NTI + GNECV+VKEG+++ L+E+NVC  Q+D NS   G R  D T R+N+I++C GAGIR+GG    D+++G NN +YGN   +    +  V +      CEN
Sbjct:   22 SPKDSIQAHLDKA-RPGDTIVLGDGEYEQDLKSVTHGTPDQRITVKGSRRAVVRGADSS-RVVEINHSYITLEGFTVSGKRGGEEYADKCVFILGTAKPRIIRENGGEYQSSLDGVVVKGMQIQDCGGECLRVRSFATNVEIYGNRIEGCGRDDFHLGGSSKNGEAIYIGTSSNQWHDGKNSRDGPDYTKYVWVHDNTIDSQGNECVEVKEGASDVLVEYNVCTDQQDSNSAGMGSRTDDVTFRYNDISDCLGAGIRIGGHTIGDKTYGENNEVYGNVFHDTEYSSVKVETGKNHVFCEN 319          
BLAST of mRNA_H-elongata_contig67298.14338.1 vs. uniprot
Match: A0A1F7I8U6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_37_12 TaxID=1802056 RepID=A0A1F7I8U6_9BACT)

HSP 1 Score: 201 bits (511), Expect = 2.300e-59
Identity = 114/291 (39.18%), Postives = 156/291 (53.61%), Query Frame = 1
Query:   43 QPGDTCILESGDHLNDGLTVTHGTEDARITITGESGACIKGSNTQDRVLQIAHNYYTIEDLCFDGGHGSENVATG-----IYVLGADWKNDLNMNGVEIKSSVTGLQMFDLEIKNFGSECVHFRYSVTWAEVQGCTIQHCGIEAFENGEGGKVGEAIYLGTALDQIRSAGADNVDADNCGYNWIHHNTIRTYGNECVDVKEGSANNLIEHNVCEQQEDPNSGCFGLRGSDNTVRWNEIAECKGAGIRVGGDR-SFGTNNNIYGNTIKNANAGAFSVHSPDQGTVCENDISG 897
            QPGDT  L  G +  D +T   GT +  ITI+G   A +KG   + R+ +I H++ ++     DG +G  +   G     IY LG            E +  VTGL++  + IKN G EC+  RY     E+   TI  CG+  F    GGK GE +Y+GTA +Q++       D D    N IHHNTI T GNECVD+KEGS  N++E+N C  Q+D  SG    RG+ N  R+NE+    GAG+R+GGD  S G NN++Y NTI+N  +G        QG +C N + G
Sbjct:    9 QPGDTINLLPGVYFQDVVTKRSGTPENPITISGTKDAVVKGGG-KARIFEINHDFISLSGFTIDGQYGELDNKNGYRDKLIYALGK-----------EERKGVTGLKIMSMSIKNAGGECIRLRYFAQRNEIAYNTIIRCGVSDFSFSGGGKNGEGVYIGTAPEQLKDGKNPTKDRDESNNNLIHHNTINTLGNECVDIKEGSWGNIVEYNNCTGQKDKESGGMDSRGNRNIFRFNEVYGNSGAGVRLGGDENSDGINNDVYENTIRNNASGGIKFQRSPQGKICGNKMEG 287          
BLAST of mRNA_H-elongata_contig67298.14338.1 vs. uniprot
Match: A0A261GHV7_9GAMM (DUF1565 domain-containing protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GHV7_9GAMM)

HSP 1 Score: 201 bits (511), Expect = 1.530e-58
Identity = 121/308 (39.29%), Postives = 163/308 (52.92%), Query Frame = 1
Query:    1 SPDEDFEAV--CLKAVQPGDTCILESGDHLNDGLTVTHGTEDARITITGESGACIKGSNTQDRVLQIAHNYYTIEDLCFDG----GHGSENVATGIYVLGADWKNDLNMNGVEIKSSVTGLQMFDLEIKNFGSECVHFRYSVTWAEVQGCTIQHCGIEAFENGEGGKVGEAIYLGTALDQIRSAGADNVDADNCGYNWIHHNTIRTYGNECVDVKEGSANNLIEHNVCEQQEDPNSGCFGLRGSDNTVRWNEIAECKGAGIRVGGD----RSFGTNNNIYGNTIKNANAGAFSVHSPDQGTVCENDIS 894
            S  E F+ +   L+  QPGD   L  G +  D  TV  G     I I G   A +KG N   RVLQI H+Y  + +   DG    G+G E+            K+ + + G E K    G  M  + I+N G ECV  RY VT AE+ G T  +CG   F+    GK GEAIY+GT+ +Q       + D D+  YNW+HHN   T GNECVD+KEG+A+NL+E+N+C  Q+DP SG F  RG  N +R+N     KGAGIRVGG+    R +G  N +YGN I + +     + +  Q  VC N ++
Sbjct:   56 SRSEPFKTINAALEYAQPGDRVYLLEGKYYQDVKTVRSGLRSKPILIQGTKSAVLKGENG-GRVLQINHDYIHLRNFTIDGLVGKGNGPEDYR----------KSLIFVQGTEHKQGPEGFVMRSMRIRNAGGECVRLRYHVTRAEIFGNTFYNCGAYDFQFDGRGKNGEAIYIGTSSEQWDDGKNPSADPDHSNYNWVHHNYFLTRGNECVDIKEGAAHNLVENNICAGQQDPASGGFDARGDYNIIRYNVSYSNKGAGIRVGGNMVNGRQYGVFNEVYGNKIFDNDNSGIKIMTYPQRYVCGNSMT 352          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67298.14338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRK8_ECTSI5.600e-15171.57FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KRG5_9PHAE5.470e-14471.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWV6_9PHAE3.580e-13166.67F5/8 type C domain-containing protein n=1 Tax=Ecto... [more]
D7FKG0_ECTSI5.300e-12960.06FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FZ38_ECTSI5.750e-7774.07Secreted protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A2W4MJI7_9CHLR1.230e-6740.26DUF1565 domain-containing protein (Fragment) n=1 T... [more]
A0A561BL56_9ACTN4.770e-6143.90Parallel beta-helix repeat protein n=1 Tax=Kribbel... [more]
B5LWC7_9PHYC1.780e-6038.67Putative nosD copper-binding protein n=1 Tax=Feldm... [more]
A0A1F7I8U6_9BACT2.300e-5939.18Uncharacterized protein n=1 Tax=Candidatus Roizman... [more]
A0A261GHV7_9GAMM1.530e-5839.29DUF1565 domain-containing protein n=1 Tax=Hahella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67298contigH-elongata_contig67298:1028..2359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score209.1
Seed ortholog evalue2.8e-51
Seed eggNOG ortholog1144312.PMI09_03816
EggNOG free text desc.Right handed beta helix region
EggNOG OGs1PHQ3@1224,2VEJU@28211,4BJ3X@82115,COG3420@1,COG3420@2
COG Functional cat.P
Best tax levelRhizobiaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGalactose-binding domain-like
Ec32 orthologEc-17_004360.2
Exons2
Model size921
Cds size921
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.8865788-CDS-H-elongata_contig67298:1027..15491622931063.8865788-CDS-H-elongata_contig67298:1027..1549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67298 1028..1549 +
1691679683.0460272-CDS-H-elongata_contig67298:1027..15491691679683.0460272-CDS-H-elongata_contig67298:1027..1549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67298 1028..1549 +
1622931063.9016907-CDS-H-elongata_contig67298:1960..23591622931063.9016907-CDS-H-elongata_contig67298:1960..2359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67298 1961..2359 +
1691679683.0613065-CDS-H-elongata_contig67298:1960..23591691679683.0613065-CDS-H-elongata_contig67298:1960..2359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67298 1961..2359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67298.14338.1prot_H-elongata_contig67298.14338.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67298 1028..2359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67298.14338.1

>prot_H-elongata_contig67298.14338.1 ID=prot_H-elongata_contig67298.14338.1|Name=mRNA_H-elongata_contig67298.14338.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=307bp
SPDEDFEAVCLKAVQPGDTCILESGDHLNDGLTVTHGTEDARITITGESG
ACIKGSNTQDRVLQIAHNYYTIEDLCFDGGHGSENVATGIYVLGADWKND
LNMNGVEIKSSVTGLQMFDLEIKNFGSECVHFRYSVTWAEVQGCTIQHCG
IEAFENGEGGKVGEAIYLGTALDQIRSAGADNVDADNCGYNWIHHNTIRT
YGNECVDVKEGSANNLIEHNVCEQQEDPNSGCFGLRGSDNTVRWNEIAEC
KGAGIRVGGDRSFGTNNNIYGNTIKNANAGAFSVHSPDQGTVCENDISGV
DKIVSIN
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mRNA from alignment at H-elongata_contig67298:1028..2359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67298.14338.1 ID=mRNA_H-elongata_contig67298.14338.1|Name=mRNA_H-elongata_contig67298.14338.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1332bp|location=Sequence derived from alignment at H-elongata_contig67298:1028..2359+ (Himanthalia elongata Himel1 dioecious)
TCTCCCGACGAAGACTTCGAGGCAGTTTGCTTGAAAGCGGTGCAACCTGG GGATACCTGCATCCTCGAGAGTGGTGACCACCTTAATGACGGTCTCACTG TTACACACGGAACGGAGGATGCCCGCATTACTATCACTGGCGAAAGCGGC GCTTGCATCAAGGGTAGCAACACCCAAGACCGAGTCCTGCAGATTGCCCA CAACTACTATACCATCGAGGACCTCTGCTTCGACGGCGGACACGGAAGTG AAAATGTTGCCACTGGCATTTACGTTCTTGGTGCGGACTGGAAAAATGAC CTCAACATGAACGGCGTGGAGATCAAGTCGTCCGTAACCGGCCTCCAAAT GTTCGACCTCGAAATCAAGAATTTTGGGTCGGAATGCGTGCACTTCCGTT ACTCGGTGACTTGGGCAGAGGTACAAGGCTGCACCATCCAGCACTGCGGA ATTGAAGCTTTCGAGAATGGTGAGGGGGGCAAGGTGGGAGAAGCCATCTA CCTGGGGACGGCGCTCGATCAAGTTGACGACAACAAGGTACATGCAGTAT GCCTGTTCTGCCTGCTGATAGTCCAATTGAACGTACCCCAAGCCTCCTGT GATAGCTCCACATTTATTTTCTATTAATAGTGACTCGTGGAGCCCAAATT GAGGGGGCCTTTTGCAGCTATTGTCCGCATACTGTTGTCGAAATAACATG CCGTCCGAGGCAACGACCGTGACTCTCTATACACATATAAATATGGCTTA TTCCCCAAGCTGTACGAAGTGGGGTGGAGGTGGGCGTCAGCCTAACTGTA CTTTCAAATAGGGTTCCAGCCTAACTGAAACAGGTGGGCATACCACGAAA ATGTTTAACCCACTTTGCTATAACGAACTTTGTCTGCTCGTCTGTTTGTC GGTGGACCATTTTCGCAGGCACCCGAGATAAAGATCAGGTCCGCTGGCGC TGATAATGTCGATGCCGACAACTGTGGGTATAACTGGATTCACCATAACA CGATACGCACCTACGGCAACGAGTGCGTTGACGTGAAGGAGGGAAGCGCG AATAACCTCATTGAGCACAATGTATGTGAGCAACAGGAGGATCCCAACTC GGGCTGCTTCGGCCTGCGTGGTTCGGATAACACTGTGCGCTGGAATGAAA TCGCGGAATGCAAAGGAGCCGGAATTCGCGTTGGCGGCGACCGCAGCTTT GGAACTAACAACAACATATACGGGAACACAATCAAGAACGCCAACGCTGG AGCGTTTAGTGTTCATTCTCCTGACCAGGGCACAGTGTGCGAGAACGATA TATCGGGGGTCGACAAGATTGTAAGTATTAAC
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Coding sequence (CDS) from alignment at H-elongata_contig67298:1028..2359+

>mRNA_H-elongata_contig67298.14338.1 ID=mRNA_H-elongata_contig67298.14338.1|Name=mRNA_H-elongata_contig67298.14338.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1842bp|location=Sequence derived from alignment at H-elongata_contig67298:1028..2359+ (Himanthalia elongata Himel1 dioecious)
TCTCCCGACGAAGACTTCGAGGCAGTTTGCTTGAAAGCGGTGCAACCTGG
GGATACCTGCATCCTCGAGAGTGGTGACCACCTTAATGACGGTCTCACTG
TTACACACGGAACGGAGGATGCCCGCATTACTATCACTGGCGAAAGCGGC
GCTTGCATCAAGGGTAGCAACACCCAAGACCGAGTCCTGCAGATTGCCCA
CAACTACTATACCATCGAGGACCTCTGCTTCGACGGCGGACACGGAAGTG
AAAATGTTGCCACTGGCATTTACGTTCTTGGTGCGGACTGGAAAAATGAC
CTCAACATGAACGGCGTGGAGATCAAGTCGTCCGTAACCGGCCTCCAAAT
GTTCGACCTCGAAATCAAGAATTTTGGGTCGGAATGCGTGCACTTCCGTT
ACTCGGTGACTTGGGCAGAGGTACAAGGCTGCACCATCCAGCACTGCGGA
ATTGAAGCTTTCGAGAATGGTGAGGGGGGCAAGGTGGGAGAAGCCATCTA
CCTGGGGACGGCGCTCGATCAATCTCCCGACGAAGACTTCGAGGCAGTTT
GCTTGAAAGCGGTGCAACCTGGGGATACCTGCATCCTCGAGAGTGGTGAC
CACCTTAATGACGGTCTCACTGTTACACACGGAACGGAGGATGCCCGCAT
TACTATCACTGGCGAAAGCGGCGCTTGCATCAAGGGTAGCAACACCCAAG
ACCGAGTCCTGCAGATTGCCCACAACTACTATACCATCGAGGACCTCTGC
TTCGACGGCGGACACGGAAGTGAAAATGTTGCCACTGGCATTTACGTTCT
TGGTGCGGACTGGAAAAATGACCTCAACATGAACGGCGTGGAGATCAAGT
CGTCCGTAACCGGCCTCCAAATGTTCGACCTCGAAATCAAGAATTTTGGG
TCGGAATGCGTGCACTTCCGTTACTCGGTGACTTGGGCAGAGGTACAAGG
CTGCACCATCCAGCACTGCGGAATTGAAGCTTTCGAGAATGGTGAGGGGG
GCAAGGTGGGAGAAGCCATCTACCTGGGGACGGCGCTCGATCAAATCAGG
TCCGCTGGCGCTGATAATGTCGATGCCGACAACTGTGGGTATAACTGGAT
TCACCATAACACGATACGCACCTACGGCAACGAGTGCGTTGACGTGAAGG
AGGGAAGCGCGAATAACCTCATTGAGCACAATGTATGTGAGCAACAGGAG
GATCCCAACTCGGGCTGCTTCGGCCTGCGTGGTTCGGATAACACTGTGCG
CTGGAATGAAATCGCGGAATGCAAAGGAGCCGGAATTCGCGTTGGCGGCG
ACCGCAGCTTTGGAACTAACAACAACATATACGGGAACACAATCAAGAAC
GCCAACGCTGGAGCGTTTAGTGTTCATTCTCCTGACCAGGGCACAGTGTG
CGAGAACGATATATCGGGGGTCGACAAGATTGTAAGTATTAACATCAGGT
CCGCTGGCGCTGATAATGTCGATGCCGACAACTGTGGGTATAACTGGATT
CACCATAACACGATACGCACCTACGGCAACGAGTGCGTTGACGTGAAGGA
GGGAAGCGCGAATAACCTCATTGAGCACAATGTATGTGAGCAACAGGAGG
ATCCCAACTCGGGCTGCTTCGGCCTGCGTGGTTCGGATAACACTGTGCGC
TGGAATGAAATCGCGGAATGCAAAGGAGCCGGAATTCGCGTTGGCGGCGA
CCGCAGCTTTGGAACTAACAACAACATATACGGGAACACAATCAAGAACG
CCAACGCTGGAGCGTTTAGTGTTCATTCTCCTGACCAGGGCACAGTGTGC
GAGAACGATATATCGGGGGTCGACAAGATTGTAAGTATTAAC
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