mRNA_H-elongata_contig67251.14334.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67251.14334.1
Unique NamemRNA_H-elongata_contig67251.14334.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67251.14334.1 vs. uniprot
Match: A0A8J5XLA3_DIALT (Triosephosphate isomerase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XLA3_DIALT)

HSP 1 Score: 76.6 bits (187), Expect = 1.730e-15
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 QKGGSVTPDTVDELMACPDIDGALVGGASLVAEKFARIVGFSS 129
            Q GGSVTP+TVDELMACPDIDGALVGGASLVA+KFARIV F +
Sbjct:  249 QYGGSVTPETVDELMACPDIDGALVGGASLVADKFARIVNFKA 291
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BLAST of mRNA_H-elongata_contig67251.14334.1 vs. uniprot
Match: A0A6S9FXW6_HETAK (Triosephosphate isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FXW6_HETAK)

HSP 1 Score: 73.9 bits (180), Expect = 1.880e-14
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 QKGGSVTPDTVDELMACPDIDGALVGGASLVAEKFARIVGFSSAVS 138
            Q GGSVTP+TVDELMACPDIDGALVGGASL AEKFARI  F  A +
Sbjct:  253 QYGGSVTPETVDELMACPDIDGALVGGASLDAEKFARICNFEMAAT 298
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BLAST of mRNA_H-elongata_contig67251.14334.1 vs. uniprot
Match: A0A6V1N6L8_HETAK (Triosephosphate isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N6L8_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 3.660e-14
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 QKGGSVTPDTVDELMACPDIDGALVGGASLVAEKFARIVGFSSAVS 138
            Q GGSVTP+TVDELMA PDIDGALVGGASL AEKF RI+ F +A +
Sbjct:   54 QYGGSVTPETVDELMAQPDIDGALVGGASLDAEKFGRIMNFKTAAA 99
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BLAST of mRNA_H-elongata_contig67251.14334.1 vs. uniprot
Match: A0A7S2UU88_9STRA (Triosephosphate isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU88_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.950e-14
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 QKGGSVTPDTVDELMACPDIDGALVGGASLVAEKFARIVGFSS 129
            Q GGSVTP+TVDELMACPDIDGALVGGASLVA+KF RI  + S
Sbjct:  203 QYGGSVTPETVDELMACPDIDGALVGGASLVADKFGRICKYQS 245
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BLAST of mRNA_H-elongata_contig67251.14334.1 vs. uniprot
Match: A0A7S2XYZ2_9STRA (Triosephosphate isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYZ2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.750e-14
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 QKGGSVTPDTVDELMACPDIDGALVGGASLVAEKFARIVGFSS 129
            Q GGSVTP+TVDELMACPDIDGALVGGASL A KF+RIV F S
Sbjct:  250 QYGGSVTPETVDELMACPDIDGALVGGASLDAAKFSRIVNFES 292
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BLAST of mRNA_H-elongata_contig67251.14334.1 vs. uniprot
Match: A0A7S0HT94_9CRYP (Triosephosphate isomerase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HT94_9CRYP)

HSP 1 Score: 72.4 bits (176), Expect = 4.810e-14
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    7 GGSVTPDTVDELMACPDIDGALVGGASLVAEKFARIVGFS 126
            GGSVTPD VD+LMACPDIDGALVGGASLV EKFARI+ F+
Sbjct:  222 GGSVTPDNVDQLMACPDIDGALVGGASLVGEKFARIMNFN 261
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BLAST of mRNA_H-elongata_contig67251.14334.1 vs. uniprot
Match: A0A835ZJI0_9STRA (Triosephosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJI0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.220e-13
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 QKGGSVTPDTVDELMACPDIDGALVGGASLVAEKFARIVGFSS 129
            Q GGSVTP++VD+LMACPDIDGALVGGASLVA+KFARI  F +
Sbjct:  212 QYGGSVTPESVDDLMACPDIDGALVGGASLVADKFARICRFQA 254
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BLAST of mRNA_H-elongata_contig67251.14334.1 vs. uniprot
Match: A0A4D9CPZ8_9STRA (Triosephosphate isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPZ8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.380e-13
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 QKGGSVTPDTVDELMACPDIDGALVGGASLVAEKFARIVGF 123
            Q GGSVTP+TVDELMA PDIDGALVGGASLV EKFARI+ F
Sbjct:  261 QYGGSVTPETVDELMAMPDIDGALVGGASLVGEKFARIINF 301
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BLAST of mRNA_H-elongata_contig67251.14334.1 vs. uniprot
Match: Q15GC7_GUITH (Triosephosphate isomerase (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=Q15GC7_GUITH)

HSP 1 Score: 72.0 bits (175), Expect = 1.460e-13
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    7 GGSVTPDTVDELMACPDIDGALVGGASLVAEKFARIVGF 123
            GGSVTPD VD+LMACPDIDGALVGGASLV EKFARI+ F
Sbjct:  335 GGSVTPDNVDQLMACPDIDGALVGGASLVGEKFARIMNF 373
[Close]
BLAST of mRNA_H-elongata_contig67251.14334.1 vs. uniprot
Match: A0A7S0QWG0_9CRYP (Triosephosphate isomerase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QWG0_9CRYP)

HSP 1 Score: 70.5 bits (171), Expect = 3.800e-13
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 QKGGSVTPDTVDELMACPDIDGALVGGASLVAEKFARIV 117
            Q GGSVTPDTVD LMACPDIDGALVGGASL+A+KF RI+
Sbjct:  265 QYGGSVTPDTVDSLMACPDIDGALVGGASLLADKFERII 303
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67251.14334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J5XLA3_DIALT1.730e-1586.05Triosephosphate isomerase n=1 Tax=Diacronema luthe... [more]
A0A6S9FXW6_HETAK1.880e-1480.43Triosephosphate isomerase n=1 Tax=Heterosigma akas... [more]
A0A6V1N6L8_HETAK3.660e-1476.09Triosephosphate isomerase n=1 Tax=Heterosigma akas... [more]
A0A7S2UU88_9STRA3.950e-1481.40Triosephosphate isomerase n=1 Tax=Fibrocapsa japon... [more]
A0A7S2XYZ2_9STRA4.750e-1483.72Triosephosphate isomerase n=1 Tax=Fibrocapsa japon... [more]
A0A7S0HT94_9CRYP4.810e-1485.00Triosephosphate isomerase n=1 Tax=Hanusia phi TaxI... [more]
A0A835ZJI0_9STRA1.220e-1379.07Triosephosphate isomerase n=1 Tax=Tribonema minus ... [more]
A0A4D9CPZ8_9STRA1.380e-1385.37Triosephosphate isomerase n=1 Tax=Nannochloropsis ... [more]
Q15GC7_GUITH1.460e-1387.18Triosephosphate isomerase (Fragment) n=1 Tax=Guill... [more]
A0A7S0QWG0_9CRYP3.800e-1384.62Triosephosphate isomerase n=1 Tax=Cryptomonas curv... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67251contigH-elongata_contig67251:721..864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.4
Seed ortholog evalue2.1e-09
Seed eggNOG ortholog38833.XP_003057514.1
EggNOG free text desc.Triosephosphate isomerase
EggNOG OGs34JCA@3041,37IFK@33090,COG0149@1,COG3386@1,KOG1643@2759,KOG4499@2759
COG Functional cat.G
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.5389254-CDS-H-elongata_contig67251:720..8641622931063.5389254-CDS-H-elongata_contig67251:720..864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67251 721..864 +
1691679682.9221618-CDS-H-elongata_contig67251:720..8641691679682.9221618-CDS-H-elongata_contig67251:720..864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67251 721..864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67251.14334.1prot_H-elongata_contig67251.14334.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67251 721..864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67251.14334.1

>prot_H-elongata_contig67251.14334.1 ID=prot_H-elongata_contig67251.14334.1|Name=mRNA_H-elongata_contig67251.14334.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
QKGGSVTPDTVDELMACPDIDGALVGGASLVAEKFARIVGFSSAVSA*
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mRNA from alignment at H-elongata_contig67251:721..864+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67251.14334.1 ID=mRNA_H-elongata_contig67251.14334.1|Name=mRNA_H-elongata_contig67251.14334.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig67251:721..864+ (Himanthalia elongata Himel1 dioecious)
CAAAAAGGTGGTTCCGTGACGCCGGACACGGTGGACGAGCTCATGGCGTG
CCCCGATATCGATGGTGCCCTTGTAGGCGGCGCCTCTCTGGTGGCAGAAA
AATTCGCTCGCATCGTGGGTTTTAGCTCGGCGGTCAGCGCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig67251:721..864+

>mRNA_H-elongata_contig67251.14334.1 ID=mRNA_H-elongata_contig67251.14334.1|Name=mRNA_H-elongata_contig67251.14334.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig67251:721..864+ (Himanthalia elongata Himel1 dioecious)
CAAAAAGGTGGTTCCGTGACGCCGGACACGGTGGACGAGCTCATGGCGTG
CCCCGATATCGATGGTGCCCTTGTAGGCGGCGCCTCTCTGGTGGCAGAAA
AATTCGCTCGCATCGTGGGTTTTAGCTCGGCGGTCAGCGCCTGACAAAAA
GGTGGTTCCGTGACGCCGGACACGGTGGACGAGCTCATGGCGTGCCCCGA
TATCGATGGTGCCCTTGTAGGCGGCGCCTCTCTGGTGGCAGAAAAATTCG
CTCGCATCGTGGGTTTTAGCTCGGCGGTCAGCGCCTGA
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