mRNA_H-elongata_contig6723.14331.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6723.14331.1
Unique NamemRNA_H-elongata_contig6723.14331.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6723.14331.1 vs. uniprot
Match: D8LLN1_ECTSI (Monooxygenase, FAD-binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLN1_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 2.890e-82
Identity = 129/176 (73.30%), Postives = 149/176 (84.66%), Query Frame = 1
Query:    1 GGGPSGLAAALMLAKRGWSNISVIERTPSADYFDKELAFVYQVDRRGQNFLDCHGLVEKLAAISVDTREFTVTQVPAEGERKEVSLPIIDDSRPTGYWLPRSVFQKLLYTEVEAAYPEQIKVLYSSTCEGIERVAGGSGIEVRVRLHG-----EEGEKEAVFRPRLLVGADGLKST 513
            GGGPSGLA ALMLAKRGWS+ISVIERTPSADYFD  +AFVYQ+DRRGQ FLD HGL EKLA +SVDTREFT+T++PA+G+RKE+SLPIID++RPT YWLPRSVFQ+LLY+EVE+ YPEQIKV YS +C+ IER+  G GIEVR   H      +EG  + VFRPRLLVGADGLKST
Sbjct:   18 GGGPSGLATALMLAKRGWSDISVIERTPSADYFDPRVAFVYQIDRRGQFFLDAHGLTEKLAEVSVDTREFTITRIPADGDRKELSLPIIDNTRPTAYWLPRSVFQQLLYSEVESKYPEQIKVFYSHSCDSIERLPEGGGIEVRASPHASGGGDKEGGDQKVFRPRLLVGADGLKST 193          
BLAST of mRNA_H-elongata_contig6723.14331.1 vs. uniprot
Match: E0UL98_GLOV7 (FAD dependent oxidoreductase n=1 Tax=Gloeothece verrucosa (strain PCC 7822) TaxID=497965 RepID=E0UL98_GLOV7)

HSP 1 Score: 154 bits (390), Expect = 1.110e-41
Identity = 79/170 (46.47%), Postives = 107/170 (62.94%), Query Frame = 1
Query:    1 GGGPSGLAAALMLAKRGWSNISVIERTPSADYFDKELAFVYQVDRRGQNFLDCHGLVEKLAAISVDTREFTVTQVPAEGERKEVSLPIIDDSRPTGYWLPRSVFQKLLYTEVEAAYPEQIKVLYSSTCEGIERVAGGSGIEVRVRLHGEEGEKEAVFRPRLLVGADGLKS 510
            GGGP+GL+ ALMLAKRGWSNI+V+E+ PSA+Y++ + AF YQ+D RGQ   D  G  EKLAA SV + EF  T +   G+RK   LPI+D  R T YWLPR+ F ++LY E+   YP  I+VL+++ C  IE+ +    +  +    GE       F P  L+G DG+ S
Sbjct:   13 GGGPAGLSVALMLAKRGWSNITVLEKRPSANYYESDKAFSYQIDGRGQKLTDFLGFTEKLAAKSVPSTEFYFTVIDKNGKRKTTQLPIVDAQRKTAYWLPRAEFLQVLYEEIIEKYPNNIQVLFNTECLSIEKKSDYLEVICQSNQQGEFS-----FYPNFLIGCDGINS 177          
BLAST of mRNA_H-elongata_contig6723.14331.1 vs. uniprot
Match: A0A3S0ZLQ2_CHLFR (Uncharacterized protein n=2 Tax=Chlorogloeopsis fritschii TaxID=1124 RepID=A0A3S0ZLQ2_CHLFR)

HSP 1 Score: 154 bits (390), Expect = 1.420e-41
Identity = 80/171 (46.78%), Postives = 110/171 (64.33%), Query Frame = 1
Query:    1 GGGPSGLAAALMLAKRGWSNISVIERTPSADYFDKELAFVYQVDRRGQNFLDCHGLVEKLAAISVDTREFTVTQVPAEGERKEVSLPIIDDSRPTGYWLPRSVFQKLLYTEVEAAYPEQIKVLYSSTCEGIERVAGGSGIE-VRVRLHGEEGEKEAVFRPRLLVGADGLKS 510
            GGGP+GLA ALMLAKRGW NI+V+E+ P+A Y++ + +F YQ+D RGQ F D   L  +L+ ISV + EF +T +  +G RK   LPI+D  R T YWLPR  F  LLY E+E  + + I VL++++C  I ++A  +  E + + + GE G     F P LLVG DGL S
Sbjct:   23 GGGPAGLATALMLAKRGWKNITVLEKRPTAGYYEPDKSFSYQIDGRGQKFTDYLELTHQLSTISVPSTEFYLTTIKPDGSRKTFKLPIVDPKRKTAYWLPRRAFLLLLYQEIERDWQDSITVLFNTSCLQINKIAINNAEEKLEIVVKGENGNI-VKFAPNLLVGCDGLNS 192          
BLAST of mRNA_H-elongata_contig6723.14331.1 vs. uniprot
Match: A0A1U7HFT9_9CYAN (FAD-binding monooxygenase n=4 Tax=Pleurocapsales TaxID=52604 RepID=A0A1U7HFT9_9CYAN)

HSP 1 Score: 154 bits (388), Expect = 2.620e-41
Identity = 75/170 (44.12%), Postives = 114/170 (67.06%), Query Frame = 1
Query:    1 GGGPSGLAAALMLAKRGWSNISVIERTPSADYFDKELAFVYQVDRRGQNFLDCHGLVEKLAAISVDTREFTVTQVPAEGERKEVSLPIIDDSRPTGYWLPRSVFQKLLYTEVEAAYPEQIKVLYSSTCEGIERVAGGSGIEVRVRLHGEEGEKEAVFRPRLLVGADGLKS 510
            GGGP+GLA AL+LAKRGW++I+V+E+ P+ADY++ + +F YQ+D RGQ   D  GL ++LA ISV + EF +TQ+  +G RK   LP++D +R T YWLPR  F +LLY E++  +  QI VL+++ C+ I++       ++++  + E G +   F P  LVG DG+ S
Sbjct:   23 GGGPAGLATALILAKRGWTDITVLEKRPAADYYEPDKSFNYQIDGRGQKLTDLLGLTQQLAEISVPSTEFYLTQIRPDGSRKTSKLPMVDPNRKTAYWLPRRAFVRLLYQEIQCNWQNQIAVLFNTKCDRIDKTEAD---KLKIVANAENG-RVIEFEPYFLVGCDGVNS 188          
BLAST of mRNA_H-elongata_contig6723.14331.1 vs. uniprot
Match: A0A856MK73_9CYAN (FAD-binding monooxygenase n=2 Tax=Brasilonema TaxID=383614 RepID=A0A856MK73_9CYAN)

HSP 1 Score: 154 bits (388), Expect = 3.130e-41
Identity = 77/172 (44.77%), Postives = 113/172 (65.70%), Query Frame = 1
Query:    1 GGGPSGLAAALMLAKRGWSNISVIERTPSADYFDKELAFVYQVDRRGQNFLDCHGLVEKLAAISVDTREFTVTQVPAEGERKEVSLPIIDDSRPTGYWLPRSVFQKLLYTEVEAAYPEQIKVLYSSTCEGIERVAG--GSGIEVRVRLHGEEGEKEAVFRPRLLVGADGLKS 510
            GGGP+GLA ALMLAKRGW+NI+V+E+  +ADY++ + +F Y +D RGQ F D  G+ +KL  ISV  +EF +T++ A G +K   LP +D  + T YW+PR  F  LLY E+E  + ++I VL+++TC  I ++A     G ++ V    + G + A F P+LLVG DG+ S
Sbjct:   22 GGGPAGLATALMLAKRGWTNITVLEKRATADYYEPDKSFNYLIDGRGQKFTDFLGITDKLIEISVPNKEFYLTEIKANGSKKTFKLPFVDPKQKTAYWIPRRAFVLLLYQEIERNWQDKITVLFNTTCVEINKIAQEHAEGEQLEVVSQTQNG-RVAKFEPQLLVGCDGIYS 192          
BLAST of mRNA_H-elongata_contig6723.14331.1 vs. uniprot
Match: A0A6P0R502_9CYAN (FAD-dependent monooxygenase (Fragment) n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A6P0R502_9CYAN)

HSP 1 Score: 150 bits (380), Expect = 3.450e-41
Identity = 75/170 (44.12%), Postives = 109/170 (64.12%), Query Frame = 1
Query:    1 GGGPSGLAAALMLAKRGWSNISVIERTPSADYFDKELAFVYQVDRRGQNFLDCHGLVEKLAAISVDTREFTVTQVPAEGERKEVSLPIIDDSRPTGYWLPRSVFQKLLYTEVEAAYPEQIKVLYSSTCEGIERVAGGSGIEVRVRLHGEEGEKEAVFRPRLLVGADGLKS 510
            GGGP+G A AL+LAKRGW  I+V+E+ P+AD+++ + +F Y +D RGQ F D  GL EKLA +SV   EF +T++ A+G RK   LPIID +R T YWL R +F +LL+ E+E  + ++I  L+++ C  I    G    ++ +   G   +K   F+P LLVG DG+ S
Sbjct:   16 GGGPAGFATALILAKRGWHQITVLEKRPAADFYEPDKSFNYLIDGRGQKFTDLLGLTEKLAKVSVPNTEFYLTEIKADGNRKTSKLPIIDPNRKTAYWLQRRIFLQLLFQEIEENWQDRITTLFNTKCLDINNKDG----KLTIIAQGVNDQKNYQFQPDLLVGCDGVNS 181          
BLAST of mRNA_H-elongata_contig6723.14331.1 vs. uniprot
Match: A0A1Z4UQI0_9CYAN (Uncharacterized protein n=5 Tax=Sphaerospermopsis TaxID=752201 RepID=A0A1Z4UQI0_9CYAN)

HSP 1 Score: 152 bits (383), Expect = 1.180e-40
Identity = 79/171 (46.20%), Postives = 109/171 (63.74%), Query Frame = 1
Query:    1 GGGPSGLAAALMLAKRGWSNISVIERTPSADYFDKELAFVYQVDRRGQNFLDCHGLVEKLAAISVDTREFTVTQVPAEGERKEVSLPIIDDSRPTGYWLPRSVFQKLLYTEVEAAYPEQIKVLYSSTCEGIERVAGGSG-IEVRVRLHGEEGEKEAVFRPRLLVGADGLKS 510
            GGGP GL AALMLAKRGW NI+VIE+ PSADY++ + +F YQ+D RGQ   D  G+ +KLA +SV   EF +T +  +G RK   LPI D  R T YWLPR+ F +LLY E++  + ++I+VL+ + C  I+  +  S  +EV  +   +E      F P L++G DGL S
Sbjct:   13 GGGPGGLGAALMLAKRGWKNITVIEKRPSADYYEPDKSFNYQIDGRGQKLTDFLGITDKLADLSVPNTEFYLTVIQKDGTRKTTKLPIADSKRKTAYWLPRAAFVELLYQEIQQNWQDKIQVLFKTECVEIKPHSQNSEQLEVITKSQNQE---PVSFVPNLILGCDGLNS 180          
BLAST of mRNA_H-elongata_contig6723.14331.1 vs. uniprot
Match: A0A8J7CF56_9CYAN (FAD-dependent monooxygenase n=1 Tax=Iningainema tapete BLCC-T55 TaxID=2748662 RepID=A0A8J7CF56_9CYAN)

HSP 1 Score: 151 bits (381), Expect = 4.180e-40
Identity = 80/174 (45.98%), Postives = 109/174 (62.64%), Query Frame = 1
Query:    1 GGGPSGLAAALMLAKRGWSNISVIERTPSADYFDKELAFVYQVDRRGQNFLDCHGLVEKLAAISVDTREFTVTQVPAEGERKEVSLPIIDDSRPTGYWLPRSVFQKLLYTEVEAAYPEQIKVLYSSTCEGIERVAGGS----GIEVRVRLHGEEGEKEAVFRPRLLVGADGLKS 510
            GGGP+GLA ALML KRGW+NI+V+E+  +ADY++ + +F YQ+D RGQ F D  GL E+L+ ISV + EF +TQ+   G RK   LP ++ +R T YWLPR  F  LLY E+E  + + I VL+++ C  I +    +     +EV VR    E E    F P LL+G DGL S
Sbjct:   23 GGGPAGLATALMLVKRGWTNITVLEQRATADYYEPDKSFSYQIDGRGQKFTDFIGLTERLSKISVPSTEFYLTQIKPTGSRKTSKLPTVNPNRKTAYWLPRRAFVLLLYQEIEQNWQDCINVLFNAKCMQINKKGINNLKQEKLEVIVRT---ENESVITFEPNLLIGCDGLNS 193          
BLAST of mRNA_H-elongata_contig6723.14331.1 vs. uniprot
Match: A0A1Z4IF83_9NOSO (Monooxygenase FAD-binding protein n=3 Tax=unclassified Nostoc TaxID=2593658 RepID=A0A1Z4IF83_9NOSO)

HSP 1 Score: 150 bits (379), Expect = 5.760e-40
Identity = 75/171 (43.86%), Postives = 113/171 (66.08%), Query Frame = 1
Query:    1 GGGPSGLAAALMLAKRGWSNISVIERTPSADYFDKELAFVYQVDRRGQNFLDCHGLVEKLAAISVDTREFTVTQVPAEGERKEVSLPIIDDSRPTGYWLPRSVFQKLLYTEVEAAYPEQIKVLYSSTCEGIERVAGGSGIEVRVRLHGEEGEKEAV-FRPRLLVGADGLKS 510
            GGGP+GLA ALMLAKRGW++I+V+E+  +ADY++ + +F Y +D RGQ F D  G+  KL+ I V T++F +T++  +G RK + LPI+D  R T YW+ R  F ++LY EVE  +   IKVL+++ C  I ++   +  E ++ +  E G+   + F P LLVG DGL+S
Sbjct:   23 GGGPAGLATALMLAKRGWTDITVLEQRSTADYYEPDKSFNYLIDGRGQKFTDYLGITSKLSKIGVSTQDFYLTRIAPDGSRKSLKLPIVDPKRKTSYWITRKAFVRMLYQEVEQNWQNSIKVLFNAKCVEINKIPINNN-EDKLDVIAEVGKDNFIKFAPSLLVGCDGLRS 192          
BLAST of mRNA_H-elongata_contig6723.14331.1 vs. uniprot
Match: K9PIV2_9CYAN (FAD dependent oxidoreductase n=1 Tax=Calothrix sp. PCC 7507 TaxID=99598 RepID=K9PIV2_9CYAN)

HSP 1 Score: 149 bits (377), Expect = 8.610e-40
Identity = 76/170 (44.71%), Postives = 113/170 (66.47%), Query Frame = 1
Query:    1 GGGPSGLAAALMLAKRGWSNISVIERTPSADYFDKELAFVYQVDRRGQNFLDCHGLVEKLAAISVDTREFTVTQVPAEGERKEVSLPIIDDSRPTGYWLPRSVFQKLLYTEVEAAYPEQIKVLYSSTCEGIERVAGGSGIEVRVRLHGEEGEKEAVFRPRLLVGADGLKS 510
            GGGP+GLA ALMLAKRGW NI+V+E+  +ADY++ + +F Y +D RGQ  +D  GL ++L+ ISV +++F +T +PA G RK + LPIID +R T YWLPR  F  LLY E+E  + + I VL+++ C  I++        + + +  E+G++  +  P LLVG DG+ S
Sbjct:   16 GGGPAGLATALMLAKRGWKNITVLEQRVAADYYEPDKSFNYLIDGRGQKLIDFLGLSDELSKISVPSQKFYLTFIPANGSRKTLDLPIIDPNRKTAYWLPRKAFVLLLYQEIERNWQDSITVLFNTKCVQIKQQE-----RLEIIVESEKGDRSKL-EPSLLVGCDGINS 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6723.14331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLN1_ECTSI2.890e-8273.30Monooxygenase, FAD-binding n=2 Tax=Ectocarpus TaxI... [more]
E0UL98_GLOV71.110e-4146.47FAD dependent oxidoreductase n=1 Tax=Gloeothece ve... [more]
A0A3S0ZLQ2_CHLFR1.420e-4146.78Uncharacterized protein n=2 Tax=Chlorogloeopsis fr... [more]
A0A1U7HFT9_9CYAN2.620e-4144.12FAD-binding monooxygenase n=4 Tax=Pleurocapsales T... [more]
A0A856MK73_9CYAN3.130e-4144.77FAD-binding monooxygenase n=2 Tax=Brasilonema TaxI... [more]
A0A6P0R502_9CYAN3.450e-4144.12FAD-dependent monooxygenase (Fragment) n=2 Tax=Osc... [more]
A0A1Z4UQI0_9CYAN1.180e-4046.20Uncharacterized protein n=5 Tax=Sphaerospermopsis ... [more]
A0A8J7CF56_9CYAN4.180e-4045.98FAD-dependent monooxygenase n=1 Tax=Iningainema ta... [more]
A0A1Z4IF83_9NOSO5.760e-4043.86Monooxygenase FAD-binding protein n=3 Tax=unclassi... [more]
K9PIV2_9CYAN8.610e-4044.71FAD dependent oxidoreductase n=1 Tax=Calothrix sp.... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6723contigH-elongata_contig6723:3..2739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score157.1
Seed ortholog evalue7.2e-36
Seed eggNOG ortholog118163.Ple7327_2293
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
EggNOG free text desc.COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent
EggNOG OGs1G3KH@1117,COG0654@1,COG0654@2
EC1.14.13.9
COG Functional cat.CH
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMonooxygenase, FAD-binding
Ec32 orthologEc-04_005130.1
Exons4
Model size517
Cds size516
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6723.14331.1prot_H-elongata_contig6723.14331.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6723 3..2738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.240862-CDS-H-elongata_contig6723:2..1211622931063.240862-CDS-H-elongata_contig6723:2..121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6723 3..121 +
1691679682.7554915-CDS-H-elongata_contig6723:2..1211691679682.7554915-CDS-H-elongata_contig6723:2..121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6723 3..121 +
1622931063.2526371-CDS-H-elongata_contig6723:925..9831622931063.2526371-CDS-H-elongata_contig6723:925..983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6723 926..983 +
1691679682.768086-CDS-H-elongata_contig6723:925..9831691679682.768086-CDS-H-elongata_contig6723:925..983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6723 926..983 +
1622931063.2722707-CDS-H-elongata_contig6723:1793..19491622931063.2722707-CDS-H-elongata_contig6723:1793..1949Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6723 1794..1949 +
1691679682.7776673-CDS-H-elongata_contig6723:1793..19491691679682.7776673-CDS-H-elongata_contig6723:1793..1949Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6723 1794..1949 +
1622931063.2880194-CDS-H-elongata_contig6723:2555..27381622931063.2880194-CDS-H-elongata_contig6723:2555..2738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6723 2556..2738 +
1691679682.787411-CDS-H-elongata_contig6723:2555..27381691679682.787411-CDS-H-elongata_contig6723:2555..2738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6723 2556..2738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6723.14331.1

>prot_H-elongata_contig6723.14331.1 ID=prot_H-elongata_contig6723.14331.1|Name=mRNA_H-elongata_contig6723.14331.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
GGGPSGLAAALMLAKRGWSNISVIERTPSADYFDKELAFVYQVDRRGQNF
LDCHGLVEKLAAISVDTREFTVTQVPAEGERKEVSLPIIDDSRPTGYWLP
RSVFQKLLYTEVEAAYPEQIKVLYSSTCEGIERVAGGSGIEVRVRLHGEE
GEKEAVFRPRLLVGADGLKSTA
back to top

mRNA from alignment at H-elongata_contig6723:3..2739+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6723.14331.1 ID=mRNA_H-elongata_contig6723.14331.1|Name=mRNA_H-elongata_contig6723.14331.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2737bp|location=Sequence derived from alignment at H-elongata_contig6723:3..2739+ (Himanthalia elongata Himel1 dioecious)
GGAGGTGGTCCTTCTGGTTTGGCGGCTGCTCTGATGCTAGCGAAGAGAGG GTGGAGCAATATCTCGGTGATCGAACGTACCCCATCAGCAGACTACTTTG ACAAAGAGCTGGCCTTTGTGTGAGAGGAACATACTCGGGGTTTTGGGTGC TTGACTATTACTCCATCTATGTGTGTGTCGGTATCTGATGGTCGTTTGTG CGATGTTATGCCAATCTGCTCGGTGTGTTTGGGTGGCCAAACCTTCTTCG GGAAGCAGATATAATAGCTTGTTGAAAGGGGACGTTTATATACTACCAGT ATATCTCAGTTGTATTCTCCCACCCTGTCTCGATTGCCTTTTCTACACGC ACAAAAAATGATGTCAGAATCAATGATAAAAAATGTCAGAAGTTTGAAGT TTTAGTGCTTTTAACATTTTTTTGAAGACAGCTTCGATTGTAGACGTCGT CCACCAGACAAACACATGTGATGGAGCTGGTCGCGCTCCCAAGAGATTCT TACGACAGGGCCGCCCTCTTTGTCGAGTTACAAAGTGAGTTGGGATGGAA TGCAGTTATCATCGCTAACCTTTGTCCCTTGAAGCACCTACAACTTATTA TCTACAAACGAGAGACACGAGGCTTGGGAGCGTGACCAGTTCCATCACAC GCAGCATTCGCATATCTCTTTAAAAACATATAAAATCATCCAAACCCTCC GAAGACCCACAACTTATATACACCCAGACTTGGTGAAATCCCGGGGACCA ACTCTAGTGCTTGATACTGTAGGGTATTATGCCCTCTCTCGGCAGTGGTA GAGCTGCGGTGTCTTTCACCCAGCTTCAGTCGTTTGGGCTACTCAACGCC CATCGCAAGTTGGAGCGTTTTCCGAACGTCACGACTTTAACGCCCCCGTT TTGTTTTTTTCTTCCCTCCGAAGGTACCAAGTTGACCGTCGCGGACAGAA CTTCCTGGATTGCCACGGTCTAGTGGAGAAGGTGTGTTCCTTATAATCTA GGTATCGTGCCGTACTGCTACTCTTGTTTCCATGAGCGAACGCCACCAAT TTTGATGGCTAAGACCATCTACTCGAAGCCTAGATTGGGACAACATACAG TAGTTAGTGCAGCAGATTCATGCTATGTTTGAGCCCTGAAAATTGCTTCA CCCCAAGAAAAAAATCAGTTTCAACAACAACAGTGGTTGATTTTTTCGAT AAGAAGCGAAATACAGGTACAACAGCAAGTTTTAGTCGTGTCCGCCGGTA CAACAGCGATTGCATCACGCACGAAGTACTTGCTGTACAGTTGTCGCCTT TGTTTCACACCTCAACAACAACAAAAATGTGATCTCGGTTTGAGTTGGGT AGAAATGGATAATGTTTTTTCCTTCTGTTTCTTTGAAAAAAAAACACACA CACACACACACACACACGCACACAAAATACATGCACACACAGACACACAC ACACCTTTGACACGTCTGATCAAAGGTTTTTGTAGCAAATATGATTGAAC CCTCCATTAGGAGGACCAACGCGAGTAGCCTAGAAGGACTAGCATGACAA TGCCGGATTGCGCGGTTATATACAATCTAATAAATACACACACACACACA CACACACACACACACACGCAGCACTCCATTCTGCAGTACAGTAACTAGTA GCAGGACTTCGTGGCTTGAAAAACCGTAGCTTGGCCTCGGCAATCTAAGG CACGCCTTTCCCGCACGACCTCACTTCCTATACTCGCGCTGCGCCGCTTC CGGGCCGGCCTCTCGTTACCCCTCCTTGCCTCTCCCTGCAGTTGGCGGCG ATATCCGTGGACACGCGGGAGTTCACGGTGACACAAGTCCCTGCGGAGGG CGAGCGCAAGGAGGTGTCCCTTCCCATCATTGACGACAGCCGCCCCACGG GCTACTGGCTTCCTCGCAGCGTCTTTCAGAAGCTTCTCTACACCGAGGTT GGGCTCGCCGCCACTGTTATTCGCATTAGTAGTATTAATAGTATTAATGA TAGCTCCACCGATTGAGGATGATATTATGAGGAGATGAGAAGTTAGTACA TTAGATTACGACAAGTTTTTTTCCCCGATCCAGCAAGCCGCTGGCCAAAG TGACAACCGGTTTAAGCAGGGGGGGGGAGGGGGGGTATGGAGGGTTGGGG CCCAATTTGCGATGGTGACGAAAAAGGTATACCCGTTGCCGATGATGTCT GTGTGCGCTCGAAGCAAAATATTCAGCGGAGCGGGGGTGAAACGAACGCT TATCCCCGGTCGGTGATTGGTTTTTTTTTCGTTATTCGCCGTTCGCGTCG GGGTAAAAAAGGCCCCCGAGGCAGCTCATCCCTTACATGCCATGGCGGTC AGACCCGCCGCCCGTCACGACCCATATATATATATATATATATAGAGAGA GAGAGATATAAATGTGTGAAGGGGGGCGAGACACAGGAGAACCCTCGCCC CCTCCGGCAAGCGTATTTCATCCCAGGGCGCTCCCGCTCCTCGTGTACCG TGCGCGATTATTTCGGCTGTTGCGCTTGTTGTAACCGCAACCACCGCGGA AAGGTGGAGGCTGCTTACCCCGAGCAGATCAAGGTGCTGTATTCCTCCAC CTGTGAAGGGATCGAACGCGTGGCGGGGGGCTCCGGCATCGAGGTCAGGG TGCGGCTACATGGGGAGGAGGGAGAGAAGGAGGCCGTGTTCCGCCCTCGG CTACTGGTCGGGGCCGACGGGCTTAAATCCACGGCAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6723:3..2739+

>mRNA_H-elongata_contig6723.14331.1 ID=mRNA_H-elongata_contig6723.14331.1|Name=mRNA_H-elongata_contig6723.14331.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig6723:3..2739+ (Himanthalia elongata Himel1 dioecious)
GGAGGTGGTCCTTCTGGTTTGGCGGCTGCTCTGATGCTAGCGAAGAGAGG
GTGGAGCAATATCTCGGTGATCGAACGTACCCCATCAGCAGACTACTTTG
ACAAAGAGCTGGCCTTTGTGGAGGTGGTCCTTCTGGTTTGGCGGCTGCTC
TGATGCTAGCGAAGAGAGGGTGGAGCAATATCTCGGTGATCGAACGTACC
CCATCAGCAGACTACTTTGACAAAGAGCTGGCCTTTGTGTACCAAGTTGA
CCGTCGCGGACAGAACTTCCTGGATTGCCACGGTCTAGTGGAGAAGGTAC
CAAGTTGACCGTCGCGGACAGAACTTCCTGGATTGCCACGGTCTAGTGGA
GAAGTTGGCGGCGATATCCGTGGACACGCGGGAGTTCACGGTGACACAAG
TCCCTGCGGAGGGCGAGCGCAAGGAGGTGTCCCTTCCCATCATTGACGAC
AGCCGCCCCACGGGCTACTGGCTTCCTCGCAGCGTCTTTCAGAAGCTTCT
CTACACCGAGTTGGCGGCGATATCCGTGGACACGCGGGAGTTCACGGTGA
CACAAGTCCCTGCGGAGGGCGAGCGCAAGGAGGTGTCCCTTCCCATCATT
GACGACAGCCGCCCCACGGGCTACTGGCTTCCTCGCAGCGTCTTTCAGAA
GCTTCTCTACACCGAGGTGGAGGCTGCTTACCCCGAGCAGATCAAGGTGC
TGTATTCCTCCACCTGTGAAGGGATCGAACGCGTGGCGGGGGGCTCCGGC
ATCGAGGTCAGGGTGCGGCTACATGGGGAGGAGGGAGAGAAGGAGGCCGT
GTTCCGCCCTCGGCTACTGGTCGGGGCCGACGGGCTTAAATCCACGGCAG
TGGAGGCTGCTTACCCCGAGCAGATCAAGGTGCTGTATTCCTCCACCTGT
GAAGGGATCGAACGCGTGGCGGGGGGCTCCGGCATCGAGGTCAGGGTGCG
GCTACATGGGGAGGAGGGAGAGAAGGAGGCCGTGTTCCGCCCTCGGCTAC
TGGTCGGGGCCGACGGGCTTAAATCCACGGCA
back to top