mRNA_H-elongata_contig672.14327.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig672.14327.1
Unique NamemRNA_H-elongata_contig672.14327.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig672.14327.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.130e-18
Identity = 51/138 (36.96%), Postives = 68/138 (49.28%), Query Frame = 2 
Query:   26 FIYQRFETIVSWQFMRWTWHT-TFYQNTSHVMFYEDIQ-----------------------------ASPAALADLAGFMGLNSSLKQVKEVHTVHNNPSPHEGFNHYKIPVETIAYMNETMSKLLPQEMVTRYGLSP 349
            FI+ RF+TIVSW   RW WHT T    +SHVMFY+D+Q                             A+P  + DLA FMGL  S  Q + V   H N  PH  +  + + + TI +MN TM+ LLP  +   +GL+P
Sbjct:  159 FIWDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQIFSACCCISNLSAPVRGARRLFYTQSSLKANPMGMIDLAAFMGLECSEDQARNVWESHQNAIPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTP 296
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig672.14327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JLX3_9PHAE2.130e-1836.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig672contigH-elongata_contig672:604..1886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_005020.2
Hectar predicted targeting categoryother localisation
Exons3
Model size486
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig672.14327.1prot_H-elongata_contig672.14327.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig672 735..1575 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931062.7916462-UTR-H-elongata_contig672:603..7341622931062.7916462-UTR-H-elongata_contig672:603..734Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig672 604..734 -
1691679682.480498-UTR-H-elongata_contig672:603..7341691679682.480498-UTR-H-elongata_contig672:603..734Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig672 604..734 -
1622931062.8566794-UTR-H-elongata_contig672:1575..15961622931062.8566794-UTR-H-elongata_contig672:1575..1596Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig672 1576..1596 -
1691679682.5120437-UTR-H-elongata_contig672:1575..15961691679682.5120437-UTR-H-elongata_contig672:1575..1596Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig672 1576..1596 -
1622931062.8691375-UTR-H-elongata_contig672:1840..18861622931062.8691375-UTR-H-elongata_contig672:1840..1886Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig672 1841..1886 -
1691679682.5235457-UTR-H-elongata_contig672:1840..18861691679682.5235457-UTR-H-elongata_contig672:1840..1886Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig672 1841..1886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931062.8152597-CDS-H-elongata_contig672:734..9531622931062.8152597-CDS-H-elongata_contig672:734..953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig672 735..953 -
1691679682.4903655-CDS-H-elongata_contig672:734..9531691679682.4903655-CDS-H-elongata_contig672:734..953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig672 735..953 -
1622931062.840235-CDS-H-elongata_contig672:1506..15751622931062.840235-CDS-H-elongata_contig672:1506..1575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig672 1507..1575 -
1691679682.5016828-CDS-H-elongata_contig672:1506..15751691679682.5016828-CDS-H-elongata_contig672:1506..1575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig672 1507..1575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig672.14327.1

>prot_H-elongata_contig672.14327.1 ID=prot_H-elongata_contig672.14327.1|Name=mRNA_H-elongata_contig672.14327.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MRWTWHTTFYQNTSHVMFYEDIQASPAALADLAGFMGLNSSLKQVKEVHT
VHNNPSPHEGFNHYKIPVETIAYMNETMSKLLPQEMVTRYGLSPI*
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mRNA from alignment at H-elongata_contig672:604..1886-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig672.14327.1 ID=mRNA_H-elongata_contig672.14327.1|Name=mRNA_H-elongata_contig672.14327.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1283bp|location=Sequence derived from alignment at H-elongata_contig672:604..1886- (Himanthalia elongata Himel1 dioecious)
GAAAGATACTGCCGATTTGGTTCCATTCATATATCAACGATTCGAGGTGA
ATATCAGAGCAAAGGTATTTGAGCGTCTGCTCAACGTCAGGTTCAGTATT
AACCGTCACTCTATATCATGCATTAAACTTCGTATTATACCCCTATAGTA
AGGCGAGGAAGCTGCAGGTACTATGAGACCAATAATCTATGTATTTTCTC
GGTCACAATGTTCGGTAATTTGGGATATTTTGAGCAACGTGCAAAGAGTC
AAGATCGCTCCTGCACCCTCCTCAACGATTTCACGAACAGACGATTGTGA
GCTGGCAATTTATGCGATGGACGTGGCACACAACGTTCTACCAGAACACG
TCCCATGTTATGTTCTACGAAGATATTCAGGCAAGCAAAACTATTGTTAT
GCAATGTGAAGTTATTTAAATCTTCCGATTATTCCTAACACTTCCCTACA
GGCACTTTGTTTGGTAAAATTCAGGAAACAACATTTTTTTTACGTTTGCA
TACTTTAATTATTACTAACTCTCAGCACAAAAACATTATGTGATGTTATC
CTTAACATGTCTGCTCATTTGAACTTGACCCCCCAAAAGCATAATGCTGT
ATTGTATTCTGAATCGCAATAAATTGTAACAACTAGAAAGCATCATTAGA
TTATGGTTATTTCTGTAGCGGCCACCACCGCAACCTGCACTATACTGTCG
CTACAGCTCTATCATCCTACTACCATATTGATCCCAATACCAAAATATTG
GCGTTTCATATTTCGATCCCTAGCGAATTTCTGTCGACAGGCCACCGAGA
GCTTGGCTTCGACCATTAGATATGACCTTCGTTTGTTGGATTTCCTTCGG
ACGCGTCAACGCTCCGCAGTTACATTTCAGTTATGACCAACTAAATTGAT
GCTAACTTTATTTTTTGCTCCGTTTCCTTGCAGGCAAGCCCTGCTGCTCT
GGCGGATCTGGCTGGCTTCATGGGGCTCAATTCCTCTCTAAAACAAGTGA
AGGAAGTGCATACAGTCCACAACAATCCATCTCCGCATGAGGGTTTCAAT
CACTACAAGATACCTGTTGAGACGATCGCCTACATGAACGAAACAATGTC
GAAGCTCTTGCCCCAGGAAATGGTTACTCGGTATGGGCTTTCCCCGATTT
AGGGATAATTAGTACGGATTACATGAGACATTGATTAGAGTACGTTGGTT
GCAGCACGAGGGTGGTAAAAAACTGCTCACAGTGGACTGCGACAGAGAGG
TAATCCTAATATCGATCTGAACAAACTACATGC
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Coding sequence (CDS) from alignment at H-elongata_contig672:604..1886-

>mRNA_H-elongata_contig672.14327.1 ID=mRNA_H-elongata_contig672.14327.1|Name=mRNA_H-elongata_contig672.14327.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig672:604..1886- (Himanthalia elongata Himel1 dioecious)
ATGCGATGGACGTGGCACACAACGTTCTACCAGAACACGTCCCATGTTAT
GTTCTACGAAGATATTCAGATGCGATGGACGTGGCACACAACGTTCTACC
AGAACACGTCCCATGTTATGTTCTACGAAGATATTCAGGCAAGCCCTGCT
GCTCTGGCGGATCTGGCTGGCTTCATGGGGCTCAATTCCTCTCTAAAACA
AGTGAAGGAAGTGCATACAGTCCACAACAATCCATCTCCGCATGAGGGTT
TCAATCACTACAAGATACCTGTTGAGACGATCGCCTACATGAACGAAACA
ATGTCGAAGCTCTTGCCCCAGGAAATGGTTACTCGGTATGGGCTTTCCCC
GATTTAGGCAAGCCCTGCTGCTCTGGCGGATCTGGCTGGCTTCATGGGGC
TCAATTCCTCTCTAAAACAAGTGAAGGAAGTGCATACAGTCCACAACAAT
CCATCTCCGCATGAGGGTTTCAATCACTACAAGATACCTGTTGAGACGAT
CGCCTACATGAACGAAACAATGTCGAAGCTCTTGCCCCAGGAAATGGTTA
CTCGGTATGGGCTTTCCCCGATTTAG
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