mRNA_H-elongata_contig6718.14326.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6718.14326.1
Unique NamemRNA_H-elongata_contig6718.14326.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6718.14326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6718contigH-elongata_contig6718:2539..3603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6718.14326.1prot_H-elongata_contig6718.14326.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6718 2577..3524 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931062.690634-UTR-H-elongata_contig6718:2538..25761622931062.690634-UTR-H-elongata_contig6718:2538..2576Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6718 2539..2576 +
1691679682.436259-UTR-H-elongata_contig6718:2538..25761691679682.436259-UTR-H-elongata_contig6718:2538..2576Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6718 2539..2576 +
1622931062.7424026-UTR-H-elongata_contig6718:3524..36031622931062.7424026-UTR-H-elongata_contig6718:3524..3603Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6718 3525..3603 +
1691679682.4711697-UTR-H-elongata_contig6718:3524..36031691679682.4711697-UTR-H-elongata_contig6718:3524..3603Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6718 3525..3603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931062.7109647-CDS-H-elongata_contig6718:2576..25801622931062.7109647-CDS-H-elongata_contig6718:2576..2580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6718 2577..2580 +
1691679682.446868-CDS-H-elongata_contig6718:2576..25801691679682.446868-CDS-H-elongata_contig6718:2576..2580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6718 2577..2580 +
1622931062.7275062-CDS-H-elongata_contig6718:3306..35241622931062.7275062-CDS-H-elongata_contig6718:3306..3524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6718 3307..3524 +
1691679682.4597855-CDS-H-elongata_contig6718:3306..35241691679682.4597855-CDS-H-elongata_contig6718:3306..3524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6718 3307..3524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6718.14326.1

>prot_H-elongata_contig6718.14326.1 ID=prot_H-elongata_contig6718.14326.1|Name=mRNA_H-elongata_contig6718.14326.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MKFGLTRRVQESCPASACLFSQPRLNLMHTPRILSTFSFSATASISTVNR
HRANPDFTRSRNFTTECPPALIQ*
back to top

mRNA from alignment at H-elongata_contig6718:2539..3603+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6718.14326.1 ID=mRNA_H-elongata_contig6718.14326.1|Name=mRNA_H-elongata_contig6718.14326.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1065bp|location=Sequence derived from alignment at H-elongata_contig6718:2539..3603+ (Himanthalia elongata Himel1 dioecious)
ACCCGGAGTACACACCAGATTCAACCTGGGTTGGGAAAATGAGCAAGTTG
ACGCGGGACGGGACTGCCAAACTCGTACCGCGAGACCAAATTCTCAGGCG
CGAACGGGGACAGGGGGAAATTGTTTTCCCCTGGTCACCTGACCTCAAGC
AGGAGTCAACCAAATCCGGTTGATCCTTTCTTTGCTACGTGTGATGAACA
TACATAGTCACACGTCTTGTGAGCAACTCCTCCGCGACTTGAAGTAGGTG
GCCAATTTACGAAACACAGTGAATCCCAAGGAACGTACAGAATAATAATT
ATCGTAAGGTAGGACAAGCACGGCATGCTCAAGCGTCTATCGAACACCTT
GTTTGGTAGCTTAATTATATTCTCATCTAAGCAGCATAGTGAACCGTAAG
GGACGTCGGTAACGCTATGTGTGATATTAGAAGGAAGACAGCATGAACAC
GACAAAGACCAGCAGTTACATGTTTTTATTTTGTTTATATTGAAATCCTT
GGACCATCTACGTATATAGTTCCTACAGAATCCTCGTGTTGTATGGAGGT
ACTGTATAGATAGAGCTGCTCAAAACAGATCACAAGTCCTGTGAGTAACT
TCTCCACGAAGTGAACTAGACGGCCAATGTACGAAACACAGCGAATCGCA
AGGAACGTATGTATATGTATGGTAATCACATATAACAGAGTAAGATGAAC
CGGAGGCCTTCTGCTTGTGGTCAGCTGAACAGGGAAAATAACTTCCCCTG
TTCCCGTTCGCGCCTGAGAATTTGGTCTCACGAGACGGGTTCAGGAGTCT
TGTCCCGCGTCAGCCTGCTTATTCTCTCAACCTAGGCTGAATCTGATGCA
TACTCCCAGGATCCTCTCGACCTTCTCGTTTTCCGCAACGGCGTCCATCT
CTACCGTCAACCGCCATCGGGCCAATCCCGATTTCACCAGGTCACGCAAT
TTTACTACCGAGTGTCCGCCGGCGCTGATCCAATAGTCCTCAAGGTAGTT
TGAGTAACGGGTGCAGCCTATTCAGGTAACCCCATGAACCAATTATTGTA
CGCCTCTATTTTCCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6718:2539..3603+

>mRNA_H-elongata_contig6718.14326.1 ID=mRNA_H-elongata_contig6718.14326.1|Name=mRNA_H-elongata_contig6718.14326.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig6718:2539..3603+ (Himanthalia elongata Himel1 dioecious)
ATGAATGAAATTTGGTCTCACGAGACGGGTTCAGGAGTCTTGTCCCGCGT
CAGCCTGCTTATTCTCTCAACCTAGGCTGAATCTGATGCATACTCCCAGG
ATCCTCTCGACCTTCTCGTTTTCCGCAACGGCGTCCATCTCTACCGTCAA
CCGCCATCGGGCCAATCCCGATTTCACCAGGTCACGCAATTTTACTACCG
AGTGTCCGCCGGCGCTGATCCAATAGAATTTGGTCTCACGAGACGGGTTC
AGGAGTCTTGTCCCGCGTCAGCCTGCTTATTCTCTCAACCTAGGCTGAAT
CTGATGCATACTCCCAGGATCCTCTCGACCTTCTCGTTTTCCGCAACGGC
GTCCATCTCTACCGTCAACCGCCATCGGGCCAATCCCGATTTCACCAGGT
CACGCAATTTTACTACCGAGTGTCCGCCGGCGCTGATCCAATAG
back to top