mRNA_H-elongata_contig6715.14324.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 154 bits (388), Expect = 2.240e-39 Identity = 85/217 (39.17%), Postives = 134/217 (61.75%), Query Frame = 1
Query: 1 VARPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDD--ILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELNIDQ 645
V RP+D+ ++G+K ++K K G DG+VEKYK RLVA GF QVE + Y E ++P + SIR+ LA AA D E+ D K AFL +++EE+Y+++P + +A RLKKA+Y L QA R W K ++ + F + +AD VF K ++ ++ V +VDD +L+ + D VT + +LG +F + D+G+V + + +TRNR+ R + + Q
Sbjct: 1030 VPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAV-YVDDNMVLSDSLDLVTKTKS--DLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQ 1243
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A1Y1NHZ0_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1NHZ0_PHOPY) HSP 1 Score: 141 bits (356), Expect = 4.200e-35 Identity = 81/213 (38.03%), Postives = 128/213 (60.09%), Query Frame = 1
Query: 7 RPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELNIDQ 645
+P DK ++ +K ++K K +G + ++K RL A F Q+E + + E +SPT SIR+ L+ AA D E+ FD K AFL ++DEE+Y+ P + P +LKK++Y L Q+ RCWN KF + F+Q AD V++ V+G+ V++++ VDD L +DK+ +N +L Q+FK+ +GD+ YY+G I R+RK + L I Q
Sbjct: 802 KPPDKHIIDSKWVFKVKRTPEGNISRFKSRLCARAFSQIEGVDFKETFSPTTRYESIRILLSLAAKYDYEIIQFDVKTAFLYGELDEEIYMSPPNGANINPNLVCKLKKSLYGLKQSPRCWNRKFNSTLKNFNFQQCTADQCVYKGQVDGK-RVLLILFVDDGLIIGEDKLILNSIIEKLKQEFKIV-LGDLNYYVGLEIERDRKNKSLFIHQ 1012
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: UPI0006A6DEFC (uncharacterized protein LOC106336398 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6DEFC) HSP 1 Score: 141 bits (355), Expect = 5.770e-35 Identity = 80/215 (37.21%), Postives = 121/215 (56.28%), Query Frame = 1
Query: 10 PKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDF------PEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELN 636
P K VG K ++ K DG VE++K R+VA G+ Q+E L Y + +SP ++R+ LA AA K + H D AFL D+DEE+Y+++P+ Y + P + RL K++Y L QA WN+K + F+Q +D +F K V+ + +VV+V+VDDIL D + RF L FKL+D+G +Y++G+ I RN+ LN
Sbjct: 736 PPGKQSVGCKWIHTIKYNPDGTVERHKSRVVAKGYTQLEGLDYLDTFSPVAKIGTLRLLLAVAAAKQWSITHLDVSNAFLNGDLDEEIYMKLPQGYEELTGKKVPPNSVCRLHKSLYGLKQASHQWNHKLSHVITGDGFKQTHSDHSLFVKYVD-KVYLVVLVYVDDILIVGNDDDAVERFKTVLKSAFKLRDLGPAKYFLGFEIARNQSGISLN 949
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A151RF77_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RF77_CAJCA) HSP 1 Score: 135 bits (339), Expect = 3.300e-34 Identity = 79/218 (36.24%), Postives = 124/218 (56.88%), Query Frame = 1
Query: 1 VARPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYH-DFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELNIDQHL 651
V P K +G K +YK K DG +E+YK RLVA GF Q+E + Y E +SP T+ R+ LA AA K L+ D AFL D+DEE+Y+++P D P +L++++Y L QA R W++K ++ + + Q+ AD +F K G + ++V+VDDIL D IN L +F +KD+ D+RY++G ++++ K LN +++
Sbjct: 29 VELPPGKHPIGCKWVYKIKHKPDGSIERYKARLVAKGFTQLEGIDYFETFSPVAKITTFRVLLALAAAKGWHLQQLDVNNAFLHGDLDEEVYMKLPPGLTADSPNQVCKLQRSLYGLKQASRQWHSKLTTALLSLGYTQSMADHSLFVKNT-GSSFTALLVYVDDILLTGTDLAEINHVKKYLDDQFSIKDLSDLRYFLGLEVSKSAKGIVLNQRKYV 245
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A7N2LEN0_QUELO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LEN0_QUELO) HSP 1 Score: 131 bits (329), Expect = 3.470e-34 Identity = 70/182 (38.46%), Postives = 109/182 (59.89%), Query Frame = 1
Query: 79 EKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKA 624
E+YK RL A GF Q E + Y E + P S+++ LA A+K L D AFL D+DEE+Y+ +P+ +H E +L K++Y L QA R W KF ++ + F Q+KAD +F + +G+ ++++V+VDD+L DK I+RF V L +FKLKD+ D++Y++G + R+ K
Sbjct: 9 ERYKARLFAKGFTQKEGVDYFETFFPVAKMVSVKVLLAMVAIKGWFLSQLDVNNAFLHGDLDEEVYMALPQGFHSQGEVVCKLNKSLYGLKQAYRQWFAKFSGTLLQLGFTQSKADYSLFTRR-QGDVFMMLLVYVDDVLIACNDKAEIDRFKVLLDDRFKLKDLSDLKYFLGLEVARSAKG 189
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI) HSP 1 Score: 138 bits (348), Expect = 3.870e-34 Identity = 77/212 (36.32%), Postives = 124/212 (58.49%), Query Frame = 1
Query: 10 PKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELNIDQ 645
P K + K +YK K + + +YK RLV G QV L + E YSP +S+R ++ AAVKD ++ H D K A+L D++EE+Y+ P + + RLKKA+Y L QAGRCWN K + + ++F ++K+DP +F + E A V+V + VDD++ + + ++ L F++KD+G + +G ++TR+R R+L+IDQ
Sbjct: 263 PPGKKTLSMKWVYKIKETEGDR--RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIFVRNTES-AIVIVALWVDDVIVFSDNAGEKSKVKSSLAHHFEMKDLGPIHRCLGMNVTRDRARRQLSIDQ 471
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A2N9I371_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I371_FAGSY) HSP 1 Score: 137 bits (346), Expect = 4.530e-34 Identity = 80/208 (38.46%), Postives = 122/208 (58.65%), Query Frame = 1
Query: 10 PKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPEAEG---RLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKA 624
P K+ +G+K ++K K+ DG +E+YK RLVA G+ Q E Y E +SP ++R LA AAVK L D AFL ++DEE+Y+ +P+ H E +L K++Y L QA R W +KF ++ F Q+KAD +F + +G + + ++V+VDDIL + D V + R + L +FKLKD+G VRY++G I R+ +
Sbjct: 145 PPGKVPIGSKWVFKVKLRSDGSLERYKARLVAKGYNQQEGFDYFETFSPVAKFVTVRSLLAIAAVKGWALYQLDVNNAFLHGELDEEVYMTLPQGLHSKGEPSNIVCKLTKSLYGLKQASRQWFSKFSATLLNHGFIQSKADYSLFTRQ-DGSSFIALLVYVDDILIASSDAVAVQRLKLFLDAQFKLKDLGPVRYFLGLEIARSSQG 351
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI) HSP 1 Score: 138 bits (348), Expect = 5.060e-34 Identity = 77/212 (36.32%), Postives = 124/212 (58.49%), Query Frame = 1
Query: 10 PKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELNIDQ 645
P K + K +YK K + + +YK RLV G QV L + E YSP +S+R ++ AAVKD ++ H D K A+L D++EE+Y+ P + + RLKKA+Y L QAGRCWN K + + ++F ++K+DP +F + E A V+V + VDD++ + + ++ L F++KD+G + +G ++TR+R R+L+IDQ
Sbjct: 868 PPGKKTLSMKWVYKIKETEGDR--RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIFVRNTES-AIVIVALWVDDVIVFSDNAGEKSKVKSSLAHHFEMKDLGPIHRCLGMNVTRDRARRQLSIDQ 1076
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY) HSP 1 Score: 135 bits (341), Expect = 6.440e-34 Identity = 79/212 (37.26%), Postives = 124/212 (58.49%), Query Frame = 1
Query: 10 PKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPEAEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELNIDQ 645
PK++ VVG+K +++ K G +GK+EKYK RLVA GF QV+ + YTE ++P SIR L+ AA D E+ D K AFL D+DEE+Y++ P +H +LKK++Y L QA W K ++ + F +++AD VF K G A ++V V+V+D+L + I++ EL +++ D+G+VR + + + AR L + Q
Sbjct: 32 PKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGIVWKLKKSLYELKQASCEWYKKVREEFEALGFTRSEADHSVFYKNENG-ALMIVAVYVNDMLLFSNSMKGIDQLKAELKDCYEMTDLGEVRCILNMEVNHDCAARTLTLTQ 242
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Match: UPI001B3B6BAC (uncharacterized protein LOC107896636 isoform X1 n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=UPI001B3B6BAC) HSP 1 Score: 135 bits (339), Expect = 7.570e-34 Identity = 79/207 (38.16%), Postives = 123/207 (59.42%), Query Frame = 1
Query: 19 KLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYSPTPTTTSIRMRLATAAVKDGELRHFDAKQAFLKADIDEELYIEIPEEYHDFPE-AEGRLKKAIYILIQAGRCWNNKFCDDVVVIRFEQAKADPYVFRKVVEGEAEVVVVVHVDDILTHAKDKVTINRFAVELGQKFKLKDIGDVRYYMGYHITRNRKARELN 636
K+ +G K +YK K+ G++E+YK RLVA G+ Q E + Y + +S ++R LA AA + L D AFL+ D+ EE+++ +PE + E RL+K++Y L QA R WN K + +++ FEQ+K D +F K EG+ V+++V+VDD+L D IN L Q FK+KD+GD+RY++G I R+++ LN
Sbjct: 13 KVPIGCKWVYKVKLRASGEIERYKARLVAKGYNQKEGIDYLDTFSSVAKMVTVRTILALAASLNWSLCQIDVSNAFLQGDLHEEVFMMLPEGFRSQGEHMVSRLQKSLYGLKQASRQWNAKLTEALMLAGFEQSKFDDSLFVKKKEGKM-VIILVYVDDLLIIGNDMDMINDLKGVLNQNFKMKDLGDLRYFLGIEILRSQEGILLN 218 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6715.14324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6715.14324.1 >prot_H-elongata_contig6715.14324.1 ID=prot_H-elongata_contig6715.14324.1|Name=mRNA_H-elongata_contig6715.14324.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp VARPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVALGFWQVEDLHYTEKYback to top mRNA from alignment at H-elongata_contig6715:6584..7237+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6715.14324.1 ID=mRNA_H-elongata_contig6715.14324.1|Name=mRNA_H-elongata_contig6715.14324.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=654bp|location=Sequence derived from alignment at H-elongata_contig6715:6584..7237+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6715:6584..7237+ >mRNA_H-elongata_contig6715.14324.1 ID=mRNA_H-elongata_contig6715.14324.1|Name=mRNA_H-elongata_contig6715.14324.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig6715:6584..7237+ (Himanthalia elongata Himel1 dioecious)back to top |