mRNA_H-elongata_contig67142.14323.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: D7FYI5_ECTSI (F-actin-capping protein subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI5_ECTSI) HSP 1 Score: 258 bits (659), Expect = 8.700e-84 Identity = 131/178 (73.60%), Postives = 145/178 (81.46%), Query Frame = 1
Query: 1 DPILEEQRQALQNELETYRGSFFSGAEKSAACVFAA-GGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRMRNTLKQNASGK 531
DP LEEQRQALQ LE YR S FS AEKSAACVF GG LVAYVSA KHNLRNWWSG+WSGRYT++VG SAEVCG +VRGHYFENGNIQLQTSK + KT+ F +SLAEA A+I+ESESALHEGLE+MY++M VTLR+MRR KPITAD FTWNVAKIRMRNTL Q A+ K
Sbjct: 126 DPALEEQRQALQEALEEYRASHFSVAEKSAACVFENDGGGGLVAYVSARKHNLRNWWSGTWSGRYTVAVGAGSAEVCGAITVRGHYFENGNIQLQTSKQVGAKTVAFTSPKSLAEAAVAYIKESESALHEGLEEMYDRMPGVTLRSMRRTKPITADSFTWNVAKIRMRNTLAQAATSK 303
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A6H5KUK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK7_9PHAE) HSP 1 Score: 257 bits (657), Expect = 2.960e-82 Identity = 130/178 (73.03%), Postives = 145/178 (81.46%), Query Frame = 1
Query: 1 DPILEEQRQALQNELETYRGSFFSGAEKSAACVFAA-GGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRMRNTLKQNASGK 531
DP LEEQRQALQ LE YR S FS AEKSAACVF GG LVAYVSA KHNLRNWWSG+WSGRY+++VG SAEVCG +VRGHYFENGNIQLQTSK + KT+ F +SLAEA A+I+ESESALHEGLE+MY++M VTLR+MRR KPITAD FTWNVAKIRMRNTL Q A+ K
Sbjct: 219 DPALEEQRQALQEALEEYRASHFSVAEKSAACVFEKDGGGGLVAYVSARKHNLRNWWSGTWSGRYSVAVGAGSAEVCGAIAVRGHYFENGNIQLQTSKQVGAKTVAFTSPESLAEAAVAYIKESESALHEGLEEMYDRMPGVTLRSMRRTKPITADSFTWNVAKIRMRNTLAQAATNK 396
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A835Z114_9STRA (F-actin-capping protein subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z114_9STRA) HSP 1 Score: 146 bits (368), Expect = 3.930e-40 Identity = 83/172 (48.26%), Postives = 109/172 (63.37%), Query Frame = 1
Query: 1 DPILEEQRQALQNELETYRGSFFSGAEKSAACVFAAGGNSLVAYVSAHKHNLRNWWSGSWSGRYTISV--GEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRMRNTL 510
D LE RQA ++ L+ YR S F A S+ FA LV YVS NLRNWWSGSW GRY ++ G+ + G +V GHYFENGN+QL++S+++ +TL D A A+ A+I+ E LH+ LE MY MSD TL+ MRRA +TAD+F+W +A+IRMRNTL
Sbjct: 112 DEGLEPLRQATEDALDAYRKSLFCAAANSSGA-FAMPDGKLVLYVSGEHLNLRNWWSGSWMGRYEVTGADGDGLVAITGHINVCGHYFENGNMQLRSSREVPQETLPSAD----AAAIIAWIRAKEGELHDSLEGMYGGMSD-TLKGMRRAVTVTADKFSWQIAQIRMRNTL 277
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A7S2WBT3_9STRA (F-actin-capping protein subunit alpha n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBT3_9STRA) HSP 1 Score: 135 bits (340), Expect = 9.790e-36 Identity = 69/171 (40.35%), Postives = 103/171 (60.23%), Query Frame = 1
Query: 1 DPILEEQRQALQNELETYRGSFFSGAEKSAACVFA-AGGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRMRNTL 510
+P +E+ R A++ +E Y GS +S S + VFA A L +S K NLRN+WSG +++++ ASA + G VR HYFE GNIQLQ+ K ++ T+ D LA+++ IQ +E +L +GLE MY M+D T + MRRAK +T ++ WNV ++R+ TL
Sbjct: 130 NPEVEDYRAAVEQAVEAYVGSQYSEESLSTSAVFADASSTKLTVVISGEKLNLRNFWSGQLLSTWSVTISGASATISGDIKVRAHYFEEGNIQLQSKKSVAEATISASDPGGLAQSIVEHIQGAEGSLQDGLESMYSNMTDETFKAMRRAKAVTGNKMNWNVNEVRLNTTL 300
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A812X353_SYMMI (F-actin-capping protein subunit alpha n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X353_SYMMI) HSP 1 Score: 127 bits (318), Expect = 1.160e-32 Identity = 71/166 (42.77%), Postives = 95/166 (57.23%), Query Frame = 1
Query: 1 DPILEEQRQALQNELETYRGSFFSGAEKSAACVFAAGGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRM 498
D +LE +R ALQ L+ Y S F AE++AA V+A G +VA +S + NLRN+WSG WS +T+ A + G V HYFE+GN+QLQT+K I+ T+ F E + A I SE L LEDMY M++ T R MRR P+ + WNV +RM
Sbjct: 117 DVLLESKRAALQAGLDAYVTSRFV-AEEAAAGVYAREGR-IVAVLSGERPNLRNFWSGRWSSTWTVQCAGDQATIAGEIKVHAHYFEDGNVQLQTTKAIASTTIPFSSEAEFTEQIVAHINASEGDLQSALEDMYANMNEETFRAMRRIMPVKRTKMEWNVNAVRM 280
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: F0YJQ7_AURAN (F-actin-capping protein subunit alpha (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJQ7_AURAN) HSP 1 Score: 114 bits (284), Expect = 9.950e-28 Identity = 58/154 (37.66%), Postives = 84/154 (54.55%), Query Frame = 1
Query: 19 QRQALQNELETYRGSFFSGAEKSAACVFAAGGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWN 480
+R A+ + Y G+ + K A + + L +S NLRN+WSG+W +T+ +G+ A V G VR HYFE+GN+QLQTSK T+ L AV AF++ +E+ L GL++MY+ MS T + MRR PIT + WN
Sbjct: 119 ERDAVAAAVGAYVGARYGAECKCGAVYESDDASELAVVISGESVNLRNFWSGNWRSEWTVVLGDGEALVSGAVKVRAHYFEDGNVQLQTSKTCGEATVAAASPADLGAAVAAFVEAAETDLQNGLQEMYDNMSAETFKAMRRVMPITRTKMKWN 272
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A1V9YSW9_9STRA (F-actin-capping protein subunit alpha n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YSW9_9STRA) HSP 1 Score: 112 bits (280), Expect = 3.880e-27 Identity = 59/165 (35.76%), Postives = 91/165 (55.15%), Query Frame = 1
Query: 22 RQALQNELETYRGSFFSGAEKSAACVFAAGGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRMRNTLKQ 516
R ALQN L+ Y S + V + G N + +S + NLRN+WSG W+ ++ + + +A + G+ + HY+E+GN+QLQ+ KD+ +T+ + D SLA AV I + E +H LEDMY MS+ T + MRR P+T + W++ R L Q
Sbjct: 110 RLALQNALDDY--SLAQYTNQGVVAVVSTGENEIAIVISTERINLRNYWSGRWTSQWKLQLEGQAATLSGSIDLHVHYYEDGNVQLQSRKDVE-QTITYHDPSSLASAVAQAIIDEEHVIHSNLEDMYINMSEETFKEMRRVMPVTQTKMDWSIHAHRTAKDLGQ 271
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A2R5GVJ6_9STRA (F-actin-capping protein subunit alpha n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVJ6_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.130e-26 Identity = 60/161 (37.27%), Postives = 93/161 (57.76%), Query Frame = 1
Query: 16 EQRQALQNELETYRGSFFSGAEKSAACVFAAGGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRM 498
E R+A+++EL Y G + + + V + G LV +S K NL+N+WSG W R+ +++ + S + G + H FE+GN+QL TSK++S L F +S SL AV I ES + + LEDMY MS ++MRRA PIT + W+ A++++
Sbjct: 125 EMREAVEHELNEYIGEQYVKGTTTLSVVCSKDGYELVVLISGEKINLKNYWSGRWRSRFVVNINDCS--LSGFVKINCHTFEDGNVQLDTSKNVSDIKLSFDNSASLGVAVRKKIVSIESKVQDSLEDMYVNMSQEAFKDMRRALPITRQKMDWSGAQMQL 283
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A7S2FGD6_9STRA (F-actin-capping protein subunit alpha n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FGD6_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.920e-26 Identity = 64/174 (36.78%), Postives = 100/174 (57.47%), Query Frame = 1
Query: 4 PILEEQRQALQNELETYRGSFFSGAEKSAACVFAAGGNS----LVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDS-QSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRMRNTL 510
P ++E R A+ E+ Y S + A+ ++ VFA + +SA K N+RN+WSG W +T++V E V G VR HYFE+GN+QLQT+K+ P L + + LA+AV +I + E AL GLE+MY M++ T + MRR PI ++ +WN+ ++++ L
Sbjct: 124 PGMDELRVAINTEVSDYIKSQYQ-AQTASCTVFAQDNDGEHQVYSVVISAEKLNVRNFWSGQWISTWTVTVMEQGTTVEGRIKVRAHYFEDGNVQLQTAKNTEPIKLSAETAGDELAKAVRKYILDQEFALQSGLEEMYTNMTEETFKAMRRVMPIHRNKVSWNLNEVKLTTNL 296
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Match: A0A7S1XL78_9STRA (F-actin-capping protein subunit alpha n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL78_9STRA) HSP 1 Score: 108 bits (270), Expect = 2.960e-26 Identity = 63/168 (37.50%), Postives = 92/168 (54.76%), Query Frame = 1
Query: 13 EEQRQALQNELETYRGSFFSGAEKSAACVFAAGGNSLVAYVSAHKHNLRNWWSGSWSGRYTISVGEASAEVCGTTSVRGHYFENGNIQLQTSKDISPKTLRFKDSQSLAEAVTAFIQESESALHEGLEDMYEKMSDVTLRNMRRAKPITADRFTWNVAKIRMRNTLKQ 516
E R LQ +E Y + F + A VF A + K NLRN+W+GSW+ +T+ A ++ GT V GHYFE+GN+QLQ SKD+ T+ L ++ I E+E + GLE+ Y+ MS+ TL+ +RR PIT + TWN+A RM + L++
Sbjct: 53 ESTRATLQEGIELYMKTHFL--DMHGAAVFEADDKFHIVLAGV-KLNLRNYWAGSWTSTWTL----AGTQLMGTVKVHGHYFEDGNVQLQVSKDVPAITV--DGGSDLVKSTVTAISEAEQVVQRGLEESYQNMSETTLQAIRRVMPITRTKMTWNLAAHRMTSQLRK 211 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67142.14323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67142.14323.1 >prot_H-elongata_contig67142.14323.1 ID=prot_H-elongata_contig67142.14323.1|Name=mRNA_H-elongata_contig67142.14323.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp DPILEEQRQALQNELETYRGSFFSGAEKSAACVFAAGGNSLVAYVSAHKHback to top mRNA from alignment at H-elongata_contig67142:896..3245- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67142.14323.1 ID=mRNA_H-elongata_contig67142.14323.1|Name=mRNA_H-elongata_contig67142.14323.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2350bp|location=Sequence derived from alignment at H-elongata_contig67142:896..3245- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67142:896..3245- >mRNA_H-elongata_contig67142.14323.1 ID=mRNA_H-elongata_contig67142.14323.1|Name=mRNA_H-elongata_contig67142.14323.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig67142:896..3245- (Himanthalia elongata Himel1 dioecious)back to top |