mRNA_H-elongata_contig67097.14319.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: D7FNN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN0_ECTSI) HSP 1 Score: 346 bits (887), Expect = 4.510e-110 Identity = 199/420 (47.38%), Postives = 257/420 (61.19%), Query Frame = 1
Query: 1 QIRTVCKD-PKIQRLAEAKIRNRAEACQMEELRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSKAIAEGMSLPCTTLGEAFTWLRQKFAAV----------TDKGSEELSTVTDEALEKNGEA-------GEAD---------------------------RSRAKEQD----KRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAAAMLGLGVGVEEIKGISSGGEIPEALAPVSNTLPLYRVLAGQRMSLPGPTPPPDFSCYLHVSGFPPAAKTDDIMRPVKAVSGCESTWFHWIDDTSGVAECPSAEAALDLIRSAASG---------------STMDKAGENAVDPKKLRLSDMKVVQLNPSLLEGDEDNGPE 1068
+IRTVCKD P+ EAK+R +A Q+ +LR+AVGFRRV+DEIS++GKPVI HNGL+D+ HTHDKFVGPIP D ++GTRA+H+ LP LFDSKVVM+KA+A GM LP T LGEA WLR+K+ A + G E +E + +G A GEA+ + A E+D +R+ + W A APGFEERY REHEAG+DAYLTGCCFAAAA +GLGVG++E+K ++SG E P AL N LPLY+V+ GQ++ LPGP P D S Y+HVSGFP AA+TD ++ +KAV GC +WFHW+DDTSGV +C SAE A L+R+AA+ + D DP +L L D+K+VQ+ +LL G PE
Sbjct: 266 EIRTVCKDDPEKHAEEEAKLRADEQARQLGDLRRAVGFRRVVDEISKAGKPVICHNGLLDLLHTHDKFVGPIPVDMDDGTRALHSLLPRLFDSKVVMAKAMAAGMKLPRTVLGEAHQWLREKYPAPXXXXXXLEEGAEAGMEPAEGAAEEGQQVDGTAVVATTSGGEANGDSKTNGEGXXXXXXXXXAVPPVEAGAEAAASERDVEALERARRGWDAVLAPGFEERYKDGGREHEAGFDAYLTGCCFAAAATVGLGVGLDELKRMASGEETPAALGSAQNVLPLYKVVGGQQVCLPGPAPKVDLSRYVHVSGFPSAARTDAVLASIKAVDGCVDSWFHWMDDTSGVVDCTSAEGAEALLRAAAAXXXXXXXXXXXXXGTPAAGDGGSGEEADPCRLSLGDLKLVQMEHALLNGGGRGAPE 685
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: A0A087Y4R9_POEFO (Poly(A)-specific ribonuclease PARN n=14 Tax=Cyprinodontoidei TaxID=8087 RepID=A0A087Y4R9_POEFO) HSP 1 Score: 91.3 bits (225), Expect = 2.330e-16 Identity = 83/269 (30.86%), Postives = 120/269 (44.61%), Query Frame = 1
Query: 79 QMEELRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSKAIAEGMSLPCTTLGEAFTWLRQKFAAVTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAAAMLGLGVGVEEIKGISSGGEIPEALAPVSNTLPLYRVLAGQRMSLPGPTPPPDFSCYLHVSGFPPAAKTDDIMRPVKAVSGCESTWFHWIDDTS 885
+ EEL AVGF RVI+ IS+SGK V+ HN L+D+ HT +F P+P D ++ P L D+K++ S T E ++ + LEK + KE + Q A P ++ TAQ + HEAGYDAY+TG CF + A + I IS ++ E P N L L R++ +++ GP P L+V+ FP KT D+ + A + +W IDDTS
Sbjct: 260 EQEELNNAVGFSRVINAISKSGKLVVGHNMLLDVMHTIHQFYCPLPEDLQDFKEVAMCVFPRLLDTKLMAS----------------------------TQPFKELINNTSLAELEK----------QVKETPFKPPQVETAEGFPSYD---TAQEQLHEAGYDAYITGLCFISMANHLGSFLMPPISYISPRSKLVE---PFFNKLFLMRIIDIPYLNITGPDLQPKRDHVLYVT-FPKEWKTSDLYQLFSAFGNIQVSW---IDDTS 480
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: S4RGQ4_PETMA (Poly(A)-specific ribonuclease PARN n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RGQ4_PETMA) HSP 1 Score: 90.1 bits (222), Expect = 4.450e-16 Identity = 84/274 (30.66%), Postives = 119/274 (43.43%), Query Frame = 1
Query: 82 MEELRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSKAIAEGMSLPCTTLGEAFTWLRQ---KFAAVTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAAAMLGLGVGVEEIKGISSGGEIP---EALAPVSNTLPLYRVLAGQRMSLPGPTPPPDFSCYLHVSGFPPAAKTDDIMRPVKAVSGCESTWFHWIDDTS 885
+EEL AVGF RVI IS+SGK ++ HN L+D+ HT +F P+P +E + P L D+K++ S + + + TTL + L + K AV A GF TA + HEAGYDAY+TG CFA+ A LG ++ K IP + P N L L R++ ++L GP P+ LHV+ FP +T D+ + A + +W IDDTS
Sbjct: 259 LEELEDAVGFTRVIQAISKSGKLLVGHNMLLDVMHTVHQFYSPLPESLDEFKELTNCVFPRLLDTKLMSSTHPFKEV-IQFTTLADLHRRLSEAPFKMPAVAS-------------------------------------------AEGFPAYSTAVEQLHEAGYDAYITGLCFASMANY-LGSFMDPPK-----SHIPARSHLIEPFVNKLFLMRIIDIPYLNLTGPDLKPNRDHVLHVT-FPKEWRTSDLHQLFSAFGNIQVSW---IDDTS 478
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: Q28DE5_XENTR (Novel protein similar to poly(A)-specific ribonuclease (Deadenylation nuclease) (Fragment) n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=Q28DE5_XENTR) HSP 1 Score: 89.4 bits (220), Expect = 5.400e-16 Identity = 87/273 (31.87%), Postives = 121/273 (44.32%), Query Frame = 1
Query: 70 EACQMEELRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSKAIAEGMSLPCTTLGEAFTWLRQKFAAVTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAAAMLGLGVGVEEIKG-ISSGGEIPEALAPVSNTLPLYRVLAGQRMSLPGPTPPPDFSCYLHVSGFPPAAKTDDIMRPVKAVSGCESTWFHWIDDTS 885
+A + EEL AVGF R+I IS SGK V+ HN L+DI HT +F +P + E + P + D+K++ S T+ E + + LEK R KE + + A GF TA + HEAGYDAY+TG CF + A LG + KG +SS +I + P N L L R++ ++L GP P LHV+ FP KT D+ + A + +W IDDTS
Sbjct: 48 QAKEREELDDAVGFSRIIQAISSSGKLVVGHNMLLDIMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMAS----------------------------TNPFKEIIYNTSLAELEK----------RLKEAPFKPPKV---DSAEGFPSYNTASEQLHEAGYDAYITGLCFISMANY-LGSFLSPPKGYVSSRSKI---IRPFFNKLFLMRIMDIPYLNLEGPDLQPKRDNVLHVA-FPKEWKTSDLYQLFSAFGNIQVSW---IDDTS 271
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: A0A199VE10_ANACO (Poly(A)-specific ribonuclease PARN n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A199VE10_ANACO) HSP 1 Score: 87.0 bits (214), Expect = 6.070e-15 Identity = 86/294 (29.25%), Postives = 130/294 (44.22%), Query Frame = 1
Query: 91 LRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVM--SKAIAEGMSLPCTTLGEAFTWLRQKFAAVTDKGSEELSTVTDEALE-KNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAAAMLGLGVGVEEIKGISSGGEIPEALAPVSNTL-------PLYRVLAGQRMSLPGPT---PPPDFSCYLHVSGFPPAAKTDDIMRPVKAVSGCES-TWFHWIDDTSGVAECPSAEAALDLI 930
+R AVGFR VID ++ K ++ HN L+DI H ++KF+GP+P+ E A+H P + D+K ++ S+ I M +L AF+ L S+ T + +E ++ EAG + F+ G +HEAGYDA++TGC FA LGV E + ++ +I + LAP N L + + G PG PP FS V GFP K D+ + V G +S T +ID T+ + + E D +
Sbjct: 332 VRSAVGFRHVIDLLASEQKLIVGHNCLLDIAHIYNKFIGPLPSSMAEFVLAVHDIFPYVVDTKHLLNSSQGIQYFMKKKSKSLSSAFSLL----CPAVSSPSKNFGTSSHVKVEVESDEAGSS------------------CFSSG---------AKHEAGYDAFMTGCVFAQICCH-LGVNFELLSPSANLTKI-DRLAPYINLLYPAWNSGTVINLSTGTEKPEPGYKRNYPPVVFSKVTLVWGFPSKLKPKDLKESICKVFGPDSVTSIFFIDSTAALIQLSKEEFVNDFL 592
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: PARN_XENLA (Poly(A)-specific ribonuclease PARN n=12 Tax=Xenopus TaxID=8353 RepID=PARN_XENLA) HSP 1 Score: 85.1 bits (209), Expect = 2.420e-14 Identity = 84/273 (30.77%), Postives = 120/273 (43.96%), Query Frame = 1
Query: 70 EACQMEELRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSKAIAEGMSLPCTTLGEAFTWLRQKFAAVTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAAAMLGLGVGVEEIKG-ISSGGEIPEALAPVSNTLPLYRVLAGQRMSLPGPTPPPDFSCYLHVSGFPPAAKTDDIMRPVKAVSGCESTWFHWIDDTS 885
+A + EEL AVGF R+I IS SGK V+ HN L+D+ HT +F +P + E + P + D+K++ S T+ E + + LEK R KE + + A GF+ TA + HEAGYDAY+TG CF + A LG + K +S +I + P N L L R++ ++L GP P LHV+ FP KT D+ + A + +W IDDTS
Sbjct: 256 QAKEREELDDAVGFSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMAS----------------------------TNPFKEIIYNTSLAELEK----------RLKEAPFKPPKV---DSAEGFQSYNTASEQLHEAGYDAYITGLCFISMANY-LGSFLSPPKDYVSCRSKI---VRPFFNKLFLMRIMDIPYLNLEGPDLQPKRDNVLHVT-FPKEWKTSDLYQLFSAFGNIQVSW---IDDTS 479
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: A0A803QCH9_CANSA (Uncharacterized protein n=4 Tax=Cannabis sativa TaxID=3483 RepID=A0A803QCH9_CANSA) HSP 1 Score: 83.6 bits (205), Expect = 8.290e-14 Identity = 55/170 (32.35%), Postives = 82/170 (48.24%), Query Frame = 1
Query: 100 AVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSK--AIAEGMSLPCTTLGEAFTWLRQKFAAVTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAA 603
A+GFR VID +S K ++ HN +DI H H+KFVGP+P + E+ ++H + P + D+K++++ + + M T+L AFT + A S V EA + D SR +W A +HEAGYDA++TGC FA A
Sbjct: 316 AIGFRHVIDLLSSEKKLIVGHNCFLDIAHVHNKFVGPLPLEAEDFVASIHKYFPHIIDTKILLNTHPILQQRMKKSKTSLSSAFTMICPHIALSVSSAVASDSYVKVEA--------QVDDSRCS--------SWNAG-------------GKHEAGYDAFMTGCIFAQA 456
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: A0A2G5C437_AQUCA (Uncharacterized protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5C437_AQUCA) HSP 1 Score: 83.6 bits (205), Expect = 8.390e-14 Identity = 62/195 (31.79%), Postives = 93/195 (47.69%), Query Frame = 1
Query: 40 LAEAKIRNRAEACQMEELRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMS--KAIAEGMSLPCTTLGEAFTWLRQKFAA-----VTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAA 603
L EA+ R EA +M+ ++ AVGFR VID + K V+ HN +DI H H+KF+GP+P+ EE ++H P + D+K ++ K + M T+L +AF +L +F++ V ++ S E DE N +G +HEAGYDA++TGC FA A
Sbjct: 312 LKEARDTKRREA-EMK-VKNAVGFRHVIDLLLSEQKLVVGHNCFLDIAHIHNKFLGPLPSKIEEFASSIHKHFPHIIDTKYLLKTDKVMQFMMKKKSTSLSKAFAYLCPQFSSLSGSSVVNRQSVEFEVQVDELRSSNWNSG----------------------------------AKHEAGYDAFMTGCVFAQA 470
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: A0A822IC25_9NEOB (Poly(A)-specific ribonuclease PARN (Fragment) n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822IC25_9NEOB) HSP 1 Score: 82.4 bits (202), Expect = 1.410e-13 Identity = 81/273 (29.67%), Postives = 121/273 (44.32%), Query Frame = 1
Query: 70 EACQMEELRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSKAIAEGMSLPCTTLGEAFTWLRQKFAAVTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFAAAA-MLGLGVGVEEIKGISSGGEIPEALAPVSNTLPLYRVLAGQRMSLPGPTPPPDFSCYLHVSGFPPAAKTDDIMRPVKAVSGCESTWFHWIDDTS 885
+A + E+L AVGF RVI IS SGK V+ HN ++D+ HT ++F +P D EE R + LP + D+K++ S Q F A+ +S LEK R + + + A P ++ T+ + HEAGYDAY+TG CF + A LG + + + ++P N L L R+ ++L GP P LHV+ FP K+ D+ + A + +W IDDTS
Sbjct: 234 KAKEQEDLNDAVGFSRVIQAISSSGKLVVGHNMMLDVMHTINQFYCQLPVDLEEFKRLTNCVLPRVLDTKLMAST---------------------QPFKAI-------ISHTVLAELEK----------RLQMAPFKPPKVESAEDFPSYD---TSVGQLHEAGYDAYITGLCFISMADYLGSFLNPPQTHVTVQS----DVISPFFNKLFLMRITDIPYLNLDGPDLLPKRDNVLHVT-FPKEWKSSDLYQLFNAFGKIQVSW---IDDTS 457
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Match: A0A4Y7ITR0_PAPSO (Uncharacterized protein n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7ITR0_PAPSO) HSP 1 Score: 79.0 bits (193), Expect = 1.720e-13 Identity = 58/180 (32.22%), Postives = 87/180 (48.33%), Query Frame = 1
Query: 91 LRKAVGFRRVIDEISESGKPVISHNGLMDIFHTHDKFVGPIPADFEEGTRAMHAFLPSLFDSKVVMSK--AIAEGMSLPCTTLGEAFTWLRQKFAAVTDKGSEELSTVTDEALEKNGEAGEADRSRAKEQDKRSMQAWYASFAPGFEERYTAQAREHEAGYDAYLTGCCFA-AAAMLGLG 621
L+ A GFRRVID +S K ++ HN +D+ H + KF+GP+P +E ++H P + D+K++++ AI M T+L AF L + A SE ++V L + + D RS W + HEAGYDA++TGC FA A + LG+G
Sbjct: 16 LKAATGFRRVIDLLSSEQKLLVGHNSFLDMTHIYSKFIGPLPPTIDEYISSVHKVFPYIIDTKLLLNTDCAIQRLMKKQSTSLSSAFALLCPQIAL----SSEGSASVNQPGL----------KIEVQVDDMRSFN-WNSG-------------ANHEAGYDAFMTGCIFAQACSHLGIG 167 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67097.14319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig67097.14319.1 >prot_H-elongata_contig67097.14319.1 ID=prot_H-elongata_contig67097.14319.1|Name=mRNA_H-elongata_contig67097.14319.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=365bp QIRTVCKDPKIQRLAEAKIRNRAEACQMEELRKAVGFRRVIDEISESGKPback to top mRNA from alignment at H-elongata_contig67097:584..2662+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig67097.14319.1 ID=mRNA_H-elongata_contig67097.14319.1|Name=mRNA_H-elongata_contig67097.14319.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2079bp|location=Sequence derived from alignment at H-elongata_contig67097:584..2662+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig67097:584..2662+ >mRNA_H-elongata_contig67097.14319.1 ID=mRNA_H-elongata_contig67097.14319.1|Name=mRNA_H-elongata_contig67097.14319.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2190bp|location=Sequence derived from alignment at H-elongata_contig67097:584..2662+ (Himanthalia elongata Himel1 dioecious)back to top |