mRNA_H-elongata_contig67074.14315.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67074.14315.1
Unique NamemRNA_H-elongata_contig67074.14315.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig67074.14315.1 vs. uniprot
Match: D7FJ92_ECTSI (ER membrane protein complex subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ92_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.860e-35
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    1 KVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKTYDILDPNFNYALLVLVLGAMTAAVLVAGRLASNKRLKDQWA 240
            KVIER+DRVLTEPTGLESTSLVLALGLDIFG RVAPSKTYD+LDPNFNYALL LVLGAM  AV VA RLA++KRL +QWA
Sbjct:  984 KVIERVDRVLTEPTGLESTSLVLALGLDIFGARVAPSKTYDMLDPNFNYALLALVLGAMATAVGVANRLAAHKRLSEQWA 1063          
BLAST of mRNA_H-elongata_contig67074.14315.1 vs. uniprot
Match: UPI0008117976 (ER membrane protein complex subunit 1 isoform X1 n=2 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI0008117976)

HSP 1 Score: 91.3 bits (225), Expect = 1.180e-19
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 KVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKTYDILDPNFNYALLVLVLGAMTAAVLVAGRLASNKRLKDQW 237
            + I RL  + T P+GLEST LVLA GLD+F TRVAPSKT+D+L  +F+Y L+ +VL A+T+  LVA  LAS K+LK  W
Sbjct:  840 QTIARLSNIFTAPSGLESTCLVLATGLDMFVTRVAPSKTFDLLKEDFDYILITVVLLALTSGSLVAKHLASRKQLKQAW 918          
BLAST of mRNA_H-elongata_contig67074.14315.1 vs. uniprot
Match: A0A0H2SNT3_9AGAM (ER membrane protein complex subunit 1 n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2SNT3_9AGAM)

HSP 1 Score: 91.3 bits (225), Expect = 1.180e-19
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:   13 RLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKTYDILDPNFNYALLVLVLGAMTAAVLVAGRLASNKRLKDQW 237
            R+DR++T P  LESTSLV A GLD+F +R+APSKT+D+L+ NFN A LVL +G + AA+++A      KRL ++W
Sbjct:  946 RIDRIITSPAVLESTSLVFAYGLDLFSSRIAPSKTFDVLNENFNKAQLVLTIGGLAAAIMIARPRVKRKRLMERW 1020          
BLAST of mRNA_H-elongata_contig67074.14315.1 vs. uniprot
Match: UPI00178216B4 (ER membrane protein complex subunit 1 n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI00178216B4)

HSP 1 Score: 90.1 bits (222), Expect = 2.770e-19
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 KVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKTYDILDPNFNYALLVLVLGAMTAAVLVAGRLASNKRLKDQW 237
            + I RL  + T P+GLEST LVLA GLD+F TRVAPSKT+D+L  +F+Y L+ +VL A+T+  LVA  LAS K LK  W
Sbjct:  445 QTIARLSNIFTAPSGLESTCLVLATGLDMFVTRVAPSKTFDLLKEDFDYILITVVLLALTSGSLVAKHLASRKLLKQAW 523          
BLAST of mRNA_H-elongata_contig67074.14315.1 vs. uniprot
Match: A0A0A1WRR8_ZEUCU (ER membrane protein complex subunit 1 n=16 Tax=Dacini TaxID=43871 RepID=A0A0A1WRR8_ZEUCU)

HSP 1 Score: 89.4 bits (220), Expect = 5.590e-19
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 KVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKTYDILDPNFNYALLVLVLGAMTAAVLVAGRLASNKRLKDQW 237
            + I RL  + T P+GLEST LVLA GLDIF TRVAPSKT+D+L  +F+Y L+  VL A+T+  LV   LAS K LK  W
Sbjct:  872 QTIARLSNIFTAPSGLESTCLVLATGLDIFVTRVAPSKTFDLLKEDFDYTLITAVLLALTSGSLVVKHLASRKLLKQAW 950          
BLAST of mRNA_H-elongata_contig67074.14315.1 vs. uniprot
Match: A0A5E3WJ96_9AGAM (ER membrane protein complex subunit 1 n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3WJ96_9AGAM)

HSP 1 Score: 89.4 bits (220), Expect = 5.600e-19
Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   16 LDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKTYDILDPNFNYALLVLVLGAMTAAVLVAGRLASNKRLKDQW 237
            +  ++T P+ LEST++V A GLD+FGTRVAPS+T+D+L PNFN A LVL LGA+TA ++    +   K+LK++W
Sbjct:  967 VKEIITSPSLLESTAVVFAYGLDLFGTRVAPSRTFDVLSPNFNKAQLVLTLGALTAGIVFVKPMVRRKKLKERW 1040          
BLAST of mRNA_H-elongata_contig67074.14315.1 vs. uniprot
Match: W8BGF1_CERCA (ER membrane protein complex subunit 1 n=2 Tax=Ceratitis capitata TaxID=7213 RepID=W8BGF1_CERCA)

HSP 1 Score: 88.2 bits (217), Expect = 1.320e-18
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 KVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKTYDILDPNFNYALLVLVLGAMTAAVLVAGRLASNKRLKDQW 237
            + I RL  + T P+GLEST LVLA GLD+F TRVAPSKT+D+L  +F+Y L+ +VL A+T+  LV   LAS K LK  W
Sbjct:  441 QTIVRLSNIFTAPSGLESTCLVLATGLDMFVTRVAPSKTFDLLKEDFDYILIAVVLLALTSGSLVVKHLASRKLLKQAW 519          
BLAST of mRNA_H-elongata_contig67074.14315.1 vs. uniprot
Match: W8BRX2_CERCA (ER membrane protein complex subunit 1 n=5 Tax=Ceratitis capitata TaxID=7213 RepID=W8BRX2_CERCA)

HSP 1 Score: 88.2 bits (217), Expect = 1.420e-18
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 KVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKTYDILDPNFNYALLVLVLGAMTAAVLVAGRLASNKRLKDQW 237
            + I RL  + T P+GLEST LVLA GLD+F TRVAPSKT+D+L  +F+Y L+ +VL A+T+  LV   LAS K LK  W
Sbjct:  838 QTIVRLSNIFTAPSGLESTCLVLATGLDMFVTRVAPSKTFDLLKEDFDYILIAVVLLALTSGSLVVKHLASRKLLKQAW 916          
BLAST of mRNA_H-elongata_contig67074.14315.1 vs. uniprot
Match: A0A6P4F9Q1_DRORH (ER membrane protein complex subunit 1 n=1 Tax=Drosophila rhopaloa TaxID=1041015 RepID=A0A6P4F9Q1_DRORH)

HSP 1 Score: 87.0 bits (214), Expect = 3.620e-18
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 KVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKTYDILDPNFNYALLVLVLGAMTAAVLVAGRLASNKRLKDQW 237
            + + RL  + T P+GLEST LV+A GLD+F TRVAPSKT+D+L  +F+Y L+ +VL A+T+  L+   LAS K LK  W
Sbjct:  831 QTVARLRNIFTAPSGLESTCLVVATGLDLFVTRVAPSKTFDLLKEDFDYILITIVLVALTSGSLIVKHLASRKLLKQAW 909          
BLAST of mRNA_H-elongata_contig67074.14315.1 vs. uniprot
Match: A0A1I8PCT7_STOCA (ER membrane protein complex subunit 1 n=4 Tax=Stomoxys calcitrans TaxID=35570 RepID=A0A1I8PCT7_STOCA)

HSP 1 Score: 87.0 bits (214), Expect = 3.620e-18
Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 KVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKTYDILDPNFNYALLVLVLGAMTAAVLVAGRLASNKRLKDQW 237
            + I RL+ + T P+GLEST LV+A GLD+F TR++PSKTYD+L  +F+Y L+ +VL  +T   LVA  LAS K LK  W
Sbjct:  841 QTISRLNYIYTAPSGLESTCLVVAAGLDMFVTRISPSKTYDLLKEDFDYILISIVLVVLTTGSLVAKHLASRKSLKQAW 919          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67074.14315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ92_ECTSI1.860e-3585.00ER membrane protein complex subunit 1 n=2 Tax=Ecto... [more]
UPI00081179761.180e-1956.96ER membrane protein complex subunit 1 isoform X1 n... [more]
A0A0H2SNT3_9AGAM1.180e-1953.33ER membrane protein complex subunit 1 n=1 Tax=Schi... [more]
UPI00178216B42.770e-1956.96ER membrane protein complex subunit 1 n=1 Tax=Rhag... [more]
A0A0A1WRR8_ZEUCU5.590e-1956.96ER membrane protein complex subunit 1 n=16 Tax=Dac... [more]
A0A5E3WJ96_9AGAM5.600e-1952.70ER membrane protein complex subunit 1 n=1 Tax=Peni... [more]
W8BGF1_CERCA1.320e-1855.70ER membrane protein complex subunit 1 n=2 Tax=Cera... [more]
W8BRX2_CERCA1.420e-1855.70ER membrane protein complex subunit 1 n=5 Tax=Cera... [more]
A0A6P4F9Q1_DRORH3.620e-1851.90ER membrane protein complex subunit 1 n=1 Tax=Dros... [more]
A0A1I8PCT7_STOCA3.620e-1853.16ER membrane protein complex subunit 1 n=4 Tax=Stom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67074contigH-elongata_contig67074:10..252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue1.8e-29
Seed eggNOG ortholog2880.D7FJ92
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500
KEGG koko:K00128
KEGG ReactionR00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130
KEGG ModuleM00135
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsKOG2103@1,KOG2103@2759
EC1.2.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal anchor
Exons1
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931061.3889105-CDS-H-elongata_contig67074:9..2521622931061.3889105-CDS-H-elongata_contig67074:9..252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67074 10..252 +
1691679681.8800755-CDS-H-elongata_contig67074:9..2521691679681.8800755-CDS-H-elongata_contig67074:9..252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67074 10..252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67074.14315.1prot_H-elongata_contig67074.14315.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67074 10..252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67074.14315.1

>prot_H-elongata_contig67074.14315.1 ID=prot_H-elongata_contig67074.14315.1|Name=mRNA_H-elongata_contig67074.14315.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
KVIERLDRVLTEPTGLESTSLVLALGLDIFGTRVAPSKTYDILDPNFNYA
LLVLVLGAMTAAVLVAGRLASNKRLKDQWA*
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mRNA from alignment at H-elongata_contig67074:10..252+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67074.14315.1 ID=mRNA_H-elongata_contig67074.14315.1|Name=mRNA_H-elongata_contig67074.14315.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig67074:10..252+ (Himanthalia elongata Himel1 dioecious)
AAGGTGATCGAGCGCTTAGACCGCGTTCTGACAGAGCCAACGGGACTTGA GTCCACCTCCCTGGTGCTCGCGCTAGGGCTAGATATCTTCGGTACCAGGG TGGCTCCCTCTAAGACGTACGATATTCTCGACCCCAACTTCAACTACGCT TTGCTCGTGCTGGTGCTGGGTGCGATGACCGCGGCCGTTTTGGTCGCTGG ACGCTTAGCGTCCAACAAGCGCCTCAAGGATCAGTGGGCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig67074:10..252+

>mRNA_H-elongata_contig67074.14315.1 ID=mRNA_H-elongata_contig67074.14315.1|Name=mRNA_H-elongata_contig67074.14315.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig67074:10..252+ (Himanthalia elongata Himel1 dioecious)
AAGGTGATCGAGCGCTTAGACCGCGTTCTGACAGAGCCAACGGGACTTGA
GTCCACCTCCCTGGTGCTCGCGCTAGGGCTAGATATCTTCGGTACCAGGG
TGGCTCCCTCTAAGACGTACGATATTCTCGACCCCAACTTCAACTACGCT
TTGCTCGTGCTGGTGCTGGGTGCGATGACCGCGGCCGTTTTGGTCGCTGG
ACGCTTAGCGTCCAACAAGCGCCTCAAGGATCAGTGGGCGTAGAAGGTGA
TCGAGCGCTTAGACCGCGTTCTGACAGAGCCAACGGGACTTGAGTCCACC
TCCCTGGTGCTCGCGCTAGGGCTAGATATCTTCGGTACCAGGGTGGCTCC
CTCTAAGACGTACGATATTCTCGACCCCAACTTCAACTACGCTTTGCTCG
TGCTGGTGCTGGGTGCGATGACCGCGGCCGTTTTGGTCGCTGGACGCTTA
GCGTCCAACAAGCGCCTCAAGGATCAGTGGGCGTAG
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