mRNA_H-elongata_contig67068.14314.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67068.14314.1
Unique NamemRNA_H-elongata_contig67068.14314.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67068.14314.1 vs. uniprot
Match: D7FW38_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW38_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 2.030e-87
Identity = 150/233 (64.38%), Postives = 170/233 (72.96%), Query Frame = 1 
Query:    1 DDALMNFGRAGLAVTLLVSFPLLVVPLTGTLVRAYREVAGVDTRSKSPLLNLDNSG--GVWPPQRDGEGSISMELEAPLLDPSAPPLHLAAALDDCCLDDTINAQGYLNSGSLDNKREPGQDAADVDISFQTRAWLTCGILSSELLLAFNISMVTDVWGFLGSTASVLIAFTLPCAAYLKIRLHLPRRREKLGQPLVKKWIAGVLLMISIVVVVVCTANSVYLVSTRKQEAGA 693
            DD LMN GR GLAVTLLVSFPLL VPL GTLVRA RE+  VDTR K+PLLNL+  G   VWPP R G      ELEAPLL+PS  P  L  A DDC LDD     G +NSG         Q   + DI ++TRAWLT  ILSSEL+LAFNI+MVTDVWGFLGSTA+V++AFTLPCAAYLKIRLHLPRRREK   PL KKW+AGVL+ +S++  VVCTAN+ YL+S RKQ  GA
Sbjct:  284 DDTLMNVGRVGLAVTLLVSFPLLTVPLIGTLVRAQRELIAVDTRGKAPLLNLETPGVTSVWPPPRSGRVGDPTELEAPLLNPSTLPDDLDTASDDCFLDDA-GILGSMNSGPELTAAAGRQADMEEDIPYKTRAWLTLAILSSELVLAFNITMVTDVWGFLGSTANVMVAFTLPCAAYLKIRLHLPRRREKQAGPLYKKWVAGVLVTLSVLAAVVCTANNFYLLSARKQAGGA 515
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BLAST of mRNA_H-elongata_contig67068.14314.1 vs. uniprot
Match: A0A835ZAV6_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV6_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.220e-16
Identity = 74/232 (31.90%), Postives = 105/232 (45.26%), Query Frame = 1 
Query:    4 DALMNFGRAGLAVTLLVSFPLLVVPLTGTLVRAYREVAGVDTRSKSPLLNLDNSGGVWPPQRDGEGSISMELEAPLLDPSAPPLHLAAALDDCCLDDTINAQGYLNSGSLDNKREP--------GQDAADVDISFQTRAWLTCGILSSELLLAFNISMVTDVWGFLGSTASVLIAFTLPCAAYLKIRLHLPRRREKLGQPLVKKWIAGVLLMISIVVVVVCTANSVYLVSTR 675
            D L+N GR GL VT+++SFPLLVVP    L+R + +      R                                    +A      A L+   L  T +        S  + R          G+DA  +  S   RA LT  +L S L LA  I+ VTDVWG LGS+ +V++AF +P AAYL IR    RR     +   ++  A  LL++S  + V CTAN+VY++++R
Sbjct:  294 DGLVNAGRLGLVVTIMLSFPLLVVPCRDALLRVHADCRYGAPRPSRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASDHDAFANLEVSLLTPTSDGGRETVKSSGGSPRXXXXXXXXAGGEDA--IATSLCLRAALTAPLLGSALALASLITRVTDVWGVLGSSVNVVVAFCVPAAAYLAIR----RRAHHNARSRARRAGAAALLVVSACLAVACTANNVYIIASR 519
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BLAST of mRNA_H-elongata_contig67068.14314.1 vs. uniprot
Match: K3WGF0_GLOUD (Aa_trans domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGF0_GLOUD)

HSP 1 Score: 58.9 bits (141), Expect = 1.640e-6
Identity = 60/219 (27.40%), Postives = 96/219 (43.84%), Query Frame = 1 
Query:    1 DDALMNFGRAGLAVTLLVSFPLLVVPLTGTLVRAYREVAGVDTRSKSPLLNLDNSGGVWPPQRDGEGSISMELEAPLLDPSAPPLHLAAALDDCCLDDTINAQGYLNSGSLDNKREPGQDAADVDISFQTRAWLTCGILSSELLLAFNISMVTDVWGFLGSTASVLIAFTLPCAAYLKIRLHLPRRREKLGQPLVKKWIAGVLLMISIVVVVVCTANSV 657
            +DAL+N GR GL +T++++ PL++ P    ++R  + V+G     KS      +S     P   GE SI++ L  P L  +  P  +                 Y++                          LT  I+   L LA     V  VW  +GST  +LI++ LPC +Y++IR H     +K      +K  A V+L++S ++ VVCT  S+
Sbjct:  350 NDALVNVGRLGLLLTIMMNMPLIMQPCRMNIIRLSKYVSGF---VKSYTSKSSSS-----PSSSGE-SIAL-LTTPTLPGAVTPPEVP----------------YVSETVF-------------------HVVLTVAIIGGVLALAIVTPGVAVVWNMVGSTVGILISYVLPCVSYIRIR-HNKHYSDK------RKLAAWVILVVSSMMCVVCTLQSI 516
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67068.14314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FW38_ECTSI2.030e-8764.38Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZAV6_9STRA4.220e-1631.90Transmembrane amino acid transporter protein-domai... [more]
K3WGF0_GLOUD1.640e-627.40Aa_trans domain-containing protein n=1 Tax=Globisp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67068contigH-elongata_contig67068:143..2748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.1
Seed ortholog evalue3.8e-69
Seed eggNOG ortholog2880.D7FW38
KEGG koko:K14992
KEGG TC2.A.18.6.8
KEGG Pathwayko04727,map04727
EggNOG free text desc.amino acid
EggNOG OGsCOG0814@1,KOG1305@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionAmino acid transporter
Ec32 orthologEc-01_003240.1
Exons4
Model size696
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67068.14314.1prot_H-elongata_contig67068.14314.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67068 155..2748 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931061.236277-UTR-H-elongata_contig67068:142..1541622931061.236277-UTR-H-elongata_contig67068:142..154Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67068 143..154 +
1691679681.8350968-UTR-H-elongata_contig67068:142..1541691679681.8350968-UTR-H-elongata_contig67068:142..154Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67068 143..154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931061.2693286-CDS-H-elongata_contig67068:154..2601622931061.2693286-CDS-H-elongata_contig67068:154..260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67068 155..260 +
1691679681.8448803-CDS-H-elongata_contig67068:154..2601691679681.8448803-CDS-H-elongata_contig67068:154..260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67068 155..260 +
1622931061.2888243-CDS-H-elongata_contig67068:1284..14751622931061.2888243-CDS-H-elongata_contig67068:1284..1475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67068 1285..1475 +
1691679681.852922-CDS-H-elongata_contig67068:1284..14751691679681.852922-CDS-H-elongata_contig67068:1284..1475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67068 1285..1475 +
1622931061.3062527-CDS-H-elongata_contig67068:1934..20781622931061.3062527-CDS-H-elongata_contig67068:1934..2078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67068 1935..2078 +
1691679681.8609602-CDS-H-elongata_contig67068:1934..20781691679681.8609602-CDS-H-elongata_contig67068:1934..2078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67068 1935..2078 +
1622931061.3283226-CDS-H-elongata_contig67068:2505..27481622931061.3283226-CDS-H-elongata_contig67068:2505..2748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67068 2506..2748 +
1691679681.8685744-CDS-H-elongata_contig67068:2505..27481691679681.8685744-CDS-H-elongata_contig67068:2505..2748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67068 2506..2748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67068.14314.1

>prot_H-elongata_contig67068.14314.1 ID=prot_H-elongata_contig67068.14314.1|Name=mRNA_H-elongata_contig67068.14314.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
MNFGRAGLAVTLLVSFPLLVVPLTGTLVRAYREVAGVDTRSKSPLLNLDN
SGGVWPPQRDGEGSISMELEAPLLDPSAPPLHLAAALDDCCLDDTINAQG
YLNSGSLDNKREPGQDAADVDISFQTRAWLTCGILSSELLLAFNISMVTD
VWGFLGSTASVLIAFTLPCAAYLKIRLHLPRRREKLGQPLVKKWIAGVLL
MISIVVVVVCTANSVYLVSTRKQEAGA*
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mRNA from alignment at H-elongata_contig67068:143..2748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67068.14314.1 ID=mRNA_H-elongata_contig67068.14314.1|Name=mRNA_H-elongata_contig67068.14314.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2606bp|location=Sequence derived from alignment at H-elongata_contig67068:143..2748+ (Himanthalia elongata Himel1 dioecious)
GATGACGCGTTGATGAATTTTGGTCGTGCTGGACTCGCCGTAACGCTGCT
CGTCAGTTTCCCGCTGCTTGTCGTGCCCCTGACCGGCACGCTCGTCCGGG
CTTATCGGGAGGTGGCCGGTCAGTGCACTCTTCGGCCTTCCCTGAGAAAG
GCTTATCAATAACTCGAAATGCTTGCGGAGGGTAGTAGAACACCGGAATG
TGCATGATACCTCTCGTGTGTGTGTGTATATATCTCTTTTGTGCATGTCT
GTGTCGTTTGTGTATTTATTAAATTGCACATAGTCTTTTCCTTTTGTATT
GGAGAGTACCTTGAACGTTTTTCTCCTTTCCGGATGGTGTATTTTTACCT
TGTGACCACGGGCTGGATTTTGACATCAGCTTATGTGAGAATTCAATTAA
AAAAATTCAAAACATAACCGCGCCTTCCGGCCCTGTCACCCTATTAATAG
TTATAGTCATTCTAGGCCACTGTAGTACTGGTATTGATTGGCATTGATTG
GCATTGATCCTCCCAGTAAGAGATGAATAATATTTTCTACAAAAACATGT
GATCATACATGACAAAGGAGATATGCTCTCTCTACCTTTCGTATCTAAGC
CATAAATGACATCACAACAATCAACAATCAACACATTGCGCTTCCTTTTC
TGCTTCCTTGCTCGCTATATAGCTTCGGTGTGTGTGTATGTGTAGTTTTG
GTTGCTCTCTCGCCCTTTTTATGTCTGTTCATGAAAAAATAAGGCCGAAA
TTATATACTGATTGACACAACTGTAGTCTAGCTCTAGAGCTAATGTCCCA
TAATCAAAATCAATCAAACGAAGAGCCACCCGAAAAAGCGAAAAGGCGTT
CGTGATGTTGTGCTGGCACCAGGCCGGAAGATTGCTCCATGATGACAGGC
GCTCTGACGTGTCGATACGGTTGATTACAACACTCGTGGTCGTGTTTCAC
TAAGCACGCTCGCCTCATACCATGATGTGCACGTTCCCGCAGCGATTATC
TTCTCTTCGAGACCGCATTTTAGGCCCCGTTCTTTCCGGCCCTTCTGCTG
TGTCGCTGTGTCGTACGATGAACGTCTTCTGCTGACGTCCTCGATCGAGG
CTCTCACACTATCGCGCCCCACGCGCTACTTCGCTCCTCTAGGTGTCGAC
ACTCGAAGCAAGAGCCCCCTCCTCAATCTGGACAATTCCGGCGGCGTGTG
GCCCCCGCAGAGAGACGGTGAGGGTAGCATCTCTATGGAGCTGGAGGCTC
CGCTGCTCGACCCGTCCGCGCCTCCGTTGCACCTCGCCGCCGCACTGGAC
GATTGCTGCCTGGATGATACCATTAACGCGCAGGTAGGGGAGAGGGCGAA
GGGAGAAGTTCGACGTTGAATATAAATCGAGCGCAAAAAAAACGTAACGC
GCTACCGTCGGTGTTCCGTCGGTGTTCCGTCGGTATCAGTTTTCCGTGTG
TAGGTATAGTACAACAGGTGTGGGCACGCACGTGATATGTAGCTAAAATG
AATGCCATGAGATTCTCAGATCCTTAAGCGTAGATCTATCCGTGGAGGTA
AAACTCGCTCCATGCGCACAGTGCAATTGTAGTACAGTGCAGTAAGTATG
GTACAAAACACTATACAACACTATATAACAGTACTTTAGATGTGACTTGA
GTCGGCAGCAAGGCGACTCACGATCAGCCCGCGGGCGACAGGCGTAGTTC
CCTTGCGAGTGGATCGAGCGAGCTCAAGCTCGCGTTTGTATTCCCACCCC
CTCCTCGTCGCTGCGCCACTATATATCTACGCGACTCAATAGGGGTATCT
AAATAGTGGTAGTTTGGATAACAAGAGGGAACCAGGACAGGACGCTGCGG
ATGTGGATATTTCGTTCCAGACGAGGGCATGGTTAACGTGCGGAATACTC
AGCTCGGAGCTGCTCTTGGCGTTCAATATTTCCATGGTGAGTCAGCCCAG
TCCCCTTTTTCTGACACGTTTACTTGTAGGGTGTGATACAGAGCTACGCT
GTAGTTTTACACATTGTACTGTATTGTGCTGAACCGCATCGTTAGTTTTG
TGGATTCTTATTTTTTATCACTATCAAAAGACTAGGGAGCTCGAGTTAAG
AGCCAGAGCTGTTGTTAGTTGTTCAAAACTTTTACGTGTCCTTGGACAGG
ATCAGACTACACGGTCGAGATAAATTAGACGAAAAGTGCGCGAATGCCCG
TCCGTCACAGAGGTGGATACCGACGCCCTCTTGGACGGGGTCGAATAGCA
TCATTAGATGAGGTCTCACAACCAGCCCTCCGCACACCCATGTGCTTTGT
TTCTTCTCCCACCCGGATGTCATTATGACGTCATGGTACTAACATAATAC
ACGATATGAATAGGTGACTGATGTATGGGGCTTCCTGGGGAGTACCGCGA
GCGTGCTGATAGCCTTCACGTTGCCGTGCGCCGCCTACCTCAAGATCCGA
CTTCACCTCCCCCGACGGAGAGAGAAGCTGGGGCAGCCTCTCGTTAAGAA
GTGGATTGCGGGGGTGCTATTGATGATCTCGATCGTGGTGGTCGTCGTCT
GCACGGCGAACAGTGTCTACCTCGTCTCCACCAGGAAGCAGGAAGCGGGG
GCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig67068:143..2748+

>mRNA_H-elongata_contig67068.14314.1 ID=mRNA_H-elongata_contig67068.14314.1|Name=mRNA_H-elongata_contig67068.14314.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig67068:143..2748+ (Himanthalia elongata Himel1 dioecious)
ATGAATTTTGGTCGTGCTGGACTCGCCGTAACGCTGCTCGTCAGTTTCCC
GCTGCTTGTCGTGCCCCTGACCGGCACGCTCGTCCGGGCTTATCGGGAGG
TGGCCGATGAATTTTGGTCGTGCTGGACTCGCCGTAACGCTGCTCGTCAG
TTTCCCGCTGCTTGTCGTGCCCCTGACCGGCACGCTCGTCCGGGCTTATC
GGGAGGTGGCCGGTGTCGACACTCGAAGCAAGAGCCCCCTCCTCAATCTG
GACAATTCCGGCGGCGTGTGGCCCCCGCAGAGAGACGGTGAGGGTAGCAT
CTCTATGGAGCTGGAGGCTCCGCTGCTCGACCCGTCCGCGCCTCCGTTGC
ACCTCGCCGCCGCACTGGACGATTGCTGCCTGGATGATACCATTAACGCG
CAGGTGTCGACACTCGAAGCAAGAGCCCCCTCCTCAATCTGGACAATTCC
GGCGGCGTGTGGCCCCCGCAGAGAGACGGTGAGGGTAGCATCTCTATGGA
GCTGGAGGCTCCGCTGCTCGACCCGTCCGCGCCTCCGTTGCACCTCGCCG
CCGCACTGGACGATTGCTGCCTGGATGATACCATTAACGCGCAGGGGTAT
CTAAATAGTGGTAGTTTGGATAACAAGAGGGAACCAGGACAGGACGCTGC
GGATGTGGATATTTCGTTCCAGACGAGGGCATGGTTAACGTGCGGAATAC
TCAGCTCGGAGCTGCTCTTGGCGTTCAATATTTCCATGGGGTATCTAAAT
AGTGGTAGTTTGGATAACAAGAGGGAACCAGGACAGGACGCTGCGGATGT
GGATATTTCGTTCCAGACGAGGGCATGGTTAACGTGCGGAATACTCAGCT
CGGAGCTGCTCTTGGCGTTCAATATTTCCATGGTGACTGATGTATGGGGC
TTCCTGGGGAGTACCGCGAGCGTGCTGATAGCCTTCACGTTGCCGTGCGC
CGCCTACCTCAAGATCCGACTTCACCTCCCCCGACGGAGAGAGAAGCTGG
GGCAGCCTCTCGTTAAGAAGTGGATTGCGGGGGTGCTATTGATGATCTCG
ATCGTGGTGGTCGTCGTCTGCACGGCGAACAGTGTCTACCTCGTCTCCAC
CAGGAAGCAGGAAGCGGGGGCTTGAGTGACTGATGTATGGGGCTTCCTGG
GGAGTACCGCGAGCGTGCTGATAGCCTTCACGTTGCCGTGCGCCGCCTAC
CTCAAGATCCGACTTCACCTCCCCCGACGGAGAGAGAAGCTGGGGCAGCC
TCTCGTTAAGAAGTGGATTGCGGGGGTGCTATTGATGATCTCGATCGTGG
TGGTCGTCGTCTGCACGGCGAACAGTGTCTACCTCGTCTCCACCAGGAAG
CAGGAAGCGGGGGCTTGA
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