mRNA_H-elongata_contig67041.14312.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67041.14312.1
Unique NamemRNA_H-elongata_contig67041.14312.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67041.14312.1 vs. uniprot
Match: D8LMV6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMV6_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 2.820e-68
Identity = 94/151 (62.25%), Postives = 119/151 (78.81%), Query Frame = 3 
Query:   21 NIEASVKDMPDPYSFNTKRYERYWLSVMHDDLDLCPETFVVAHGTSADALLRYAERYQIWGALLVCPGGELYHAAERHGRAYVWYLIRNNCPWIAIIHGKGDPVMGDDEARILKDVLVVPSTLYREVEGGEDRFRHRTGPLTEVEQLVAYA 473
            ++E +++DMPDPYSFNTKRYE +WL+ M D+L L P T VVAHGT+ADA+LR+ E+Y++WGA+LVCPGGE+YHA ERHGRAYVW  +R  CPW+AI+HG GDP+MGD EA  +K  L VP  L+RE +GG+ R R  TG L EVE+LV  A
Sbjct:   77 DVEVTIEDMPDPYSFNTKRYETFWLNFMADELALDPGTLVVAHGTAADAVLRFVEKYEVWGAVLVCPGGEMYHAGERHGRAYVWPAVRRGCPWLAIVHGNGDPIMGDAEAGRMKGALGVPPLLFREADGGQQRLRDHTGSLREVEELVLSA 227
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BLAST of mRNA_H-elongata_contig67041.14312.1 vs. uniprot
Match: A0A835YHT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHT6_9STRA)

HSP 1 Score: 108 bits (270), Expect = 6.190e-26
Identity = 61/141 (43.26%), Postives = 81/141 (57.45%), Query Frame = 3 
Query:   45 MPDPYSFNTKRYERYWLSVMHD--DLDLCPETFVVAHGTSADALLRYAERYQIWGALLVCPGGELYHAAERHGRAYVWYLIRNNCPW----------------IAIIHGKGDPVMGDDEARILKDVLVVPSTLYREVEGGE 413
            +PD Y+FN KRYER+WL +M    +L + P T V+A G +ADA LRY ER Q+ GA+LV   G+LYHAAERHGRAY W  IR NC                  +A+ +G+G    G +E R ++  L VP  L+    G +
Sbjct:   50 LPDIYAFNNKRYERFWLGLMGSAQELHITPHTLVIAAGAAADATLRYIERSQVHGAILV-NAGDLYHAAERHGRAYAWAQIRANCDGGXXXXXXXXXXXXXARVALAYGEG----GLEEGRAVQAALRVPEALFVTAPGAD 185
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BLAST of mRNA_H-elongata_contig67041.14312.1 vs. uniprot
Match: A0A6P5AGF5_BRABE (LOW QUALITY PROTEIN: putative hydrolase RBBP9 n=5 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5AGF5_BRABE)

HSP 1 Score: 72.8 bits (177), Expect = 1.450e-12
Identity = 37/114 (32.46%), Postives = 59/114 (51.75%), Query Frame = 3 
Query:   21 NIEASVKDMPDPYSFNTKRYERYWLSVMHDDLDLCPETFVVAHGTSADALLRYAERYQIWGALLVCP-----GGELYHAAERHGRAYVWYLIRNNCPWIAIIHGKGDPVMGDDE 347
            N + ++K+MPDP        E  W+  MHD+L     T V+ H + A+A +RYAE+YQ++G +LV       G E   A+  + R + W  ++ N  W+     + DP +  DE
Sbjct:   37 NFKCTLKNMPDPVLAR----ENIWIPFMHDELQCDETTIVIGHSSGAEAAMRYAEQYQVFGIILVSACVTDLGDENERASGYYSRPWEWDKVKANTRWVVQFGSRDDPFIPWDE 146
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BLAST of mRNA_H-elongata_contig67041.14312.1 vs. uniprot
Match: A0A8B7ZQ06_ACAPL (putative hydrolase RBBP9 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZQ06_ACAPL)

HSP 1 Score: 71.2 bits (173), Expect = 5.180e-12
Identity = 40/123 (32.52%), Postives = 62/123 (50.41%), Query Frame = 3 
Query:   18 ENIEASVKDMPDPYSFNTKRYERYWLSVMHDDLDLCPETFVVAHGTSADALLRYAERYQIWGALLVCP-----GGELYHAAERHGRAYVWYLIRNNCPWIAIIHGKGDPVMGDDEARILKDVL 371
            E +E ++K MPDP        E  W+  MHD L    +T +V H + A A +RYAE+Y+I+G +LV       G E    +    R + W L++NN  +I +     DP +   E +++ D L
Sbjct:   33 EGLECTLKSMPDPVIAR----ETIWIPFMHDQLCCDEKTIIVGHSSGAAAAMRYAEKYKIYGIILVSAYVNDLGVENERQSGYFSRPWEWELMKNNTQFITLFGSTDDPFIPWSEMQVIVDNL 151
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BLAST of mRNA_H-elongata_contig67041.14312.1 vs. uniprot
Match: T2MHJ3_HYDVU (Putative hydrolase RBBP9 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2MHJ3_HYDVU)

HSP 1 Score: 61.2 bits (147), Expect = 2.910e-8
Identity = 32/117 (27.35%), Postives = 61/117 (52.14%), Query Frame = 3 
Query:   36 VKDMPDPYSFNTKRYERYWLSVMHDDLDLCPETFVVAHGTSADALLRYAERYQIWGALLVCP-GGELYHAAERHG----RAYVWYLIRNNCPWIAIIHGKGDPVMGDDEARILKDVL 371
            +++MPDP        E  W++ MHD+L +   T ++ H + A A +RYAE+++++G +LV     +L  + E+      R + W +++ N  WI       DP +   E +++ + L
Sbjct:   41 LRNMPDPIYAR----ESQWITFMHDELLIDEHTLIIGHSSGACAAVRYAEKFKVYGVVLVSAYASDLGDSIEKQSGYFDRPWRWDMVKANTQWICQFGSIDDPYLPWSEQKLVSESL 153
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BLAST of mRNA_H-elongata_contig67041.14312.1 vs. uniprot
Match: A0A8B6XFR3_HYDVU (putative hydrolase RBBP9 n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XFR3_HYDVU)

HSP 1 Score: 61.2 bits (147), Expect = 6.140e-8
Identity = 32/117 (27.35%), Postives = 61/117 (52.14%), Query Frame = 3 
Query:   36 VKDMPDPYSFNTKRYERYWLSVMHDDLDLCPETFVVAHGTSADALLRYAERYQIWGALLVCP-GGELYHAAERHG----RAYVWYLIRNNCPWIAIIHGKGDPVMGDDEARILKDVL 371
            +++MPDP        E  W++ MHD+L +   T ++ H + A A +RYAE+++++G +LV     +L  + E+      R + W +++ N  WI       DP +   E +++ + L
Sbjct:  100 LRNMPDPIYAR----ESQWITFMHDELLIDEHTLIIGHSSGACAAVRYAEKFKVYGVVLVSAYASDLGDSIEKQSGYFDRPWRWDMVKANTQWICQFGSIDDPYLPWSEQKLVSESL 212
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BLAST of mRNA_H-elongata_contig67041.14312.1 vs. uniprot
Match: UPI001BCA50C9 (alpha/beta hydrolase n=1 Tax=Parachlamydia sp. AcF125 TaxID=2795736 RepID=UPI001BCA50C9)

HSP 1 Score: 57.4 bits (137), Expect = 6.960e-7
Identity = 38/130 (29.23%), Postives = 58/130 (44.62%), Query Frame = 3 
Query:   12 LKENIE-----ASVKDMPDPYSFNTKRYERYWLSVMHDDLDLCPETFVVAHGTSADALLRYAERYQIWGALLVCP-----GGELYHAAERHGRAYVWYLIRNNCPWIAIIHGKGDPVMGDDEARILKDVL 371
            +K+N+E        K  PD +   ++    YWL  +  DL     T ++ H + A   +RYAE+Y I+G++LV       G E    +  +   + W  IR N  WI       DP +   EAR + D L
Sbjct:   23 VKKNMEHLGVAVIAKTFPDNFLARSE----YWLPFLKKDLRADANTILIGHSSGAVCAMRYAEKYPIFGSVLVAACYTDLGSETEKLSGYYDDPWDWEAIRQNQKWIIQFASTDDPYIPIKEARYIHDKL 148
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BLAST of mRNA_H-elongata_contig67041.14312.1 vs. uniprot
Match: A0A0G1RWJ0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Beckwithbacteria bacterium GW2011_GWB1_47_15 TaxID=1618371 RepID=A0A0G1RWJ0_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 1.920e-5
Identity = 32/113 (28.32%), Postives = 51/113 (45.13%), Query Frame = 3 
Query:    6 KLLKENIEASVKDMPDPYSFNTKRYERYWLSVMHDDLDLCPETFVVAHGTSADALLRYAERYQIWGALLVCP-----GGELYHAAERHGRAYVWYLIRNNCPWIAIIHGKGDP 329
            +L K  ++    D PDP        E+YWL  + ++L     T ++ H + A A +R+ E+ Q+ G++LV       G +   A+    R + W  IR N  WI       DP
Sbjct:   30 ELKKLKLKVLTPDFPDPVLAR----EKYWLPFLREELKADKNTILIGHSSGAIAAMRFTEKNQLLGSILVASYYTDLGDKEEKASGYFDRPWQWDKIRKNQKWIVQFASIDDP 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67041.14312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LMV6_ECTSI2.820e-6862.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHT6_9STRA6.190e-2643.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6P5AGF5_BRABE1.450e-1232.46LOW QUALITY PROTEIN: putative hydrolase RBBP9 n=5 ... [more]
A0A8B7ZQ06_ACAPL5.180e-1232.52putative hydrolase RBBP9 n=1 Tax=Acanthaster planc... [more]
T2MHJ3_HYDVU2.910e-827.35Putative hydrolase RBBP9 n=1 Tax=Hydra vulgaris Ta... [more]
A0A8B6XFR3_HYDVU6.140e-827.35putative hydrolase RBBP9 n=2 Tax=Hydra vulgaris Ta... [more]
UPI001BCA50C96.960e-729.23alpha/beta hydrolase n=1 Tax=Parachlamydia sp. AcF... [more]
A0A0G1RWJ0_9BACT1.920e-528.32Uncharacterized protein n=1 Tax=Candidatus Beckwit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67041contigH-elongata_contig67041:1225..3188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.0
Seed ortholog evalue2.8e-07
Seed eggNOG ortholog7739.XP_002606619.1
Preferred nameRBBP9
KEGG koko:K07002
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0008150,GO:0031974,GO:0031981,GO:0042127,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0065007,GO:0070013
EggNOG free text desc.regulation of cell proliferation
EggNOG OGs28P25@1,2QVNM@2759,38H92@33154,3BMNX@33208,3CZ87@33213,47ZZA@7711
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-02_003780.1
Exons4
Model size595
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67041.14312.1prot_H-elongata_contig67041.14312.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67041 1308..3144 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.9663892-UTR-H-elongata_contig67041:1224..13071622931060.9663892-UTR-H-elongata_contig67041:1224..1307Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67041 1225..1307 -
1691679681.7631674-UTR-H-elongata_contig67041:1224..13071691679681.7631674-UTR-H-elongata_contig67041:1224..1307Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67041 1225..1307 -
1622931061.1355486-UTR-H-elongata_contig67041:3144..31881622931061.1355486-UTR-H-elongata_contig67041:3144..3188Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67041 3145..3188 -
1691679681.8153923-UTR-H-elongata_contig67041:3144..31881691679681.8153923-UTR-H-elongata_contig67041:3144..3188Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67041 3145..3188 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.9832554-CDS-H-elongata_contig67041:1307..14671622931060.9832554-CDS-H-elongata_contig67041:1307..1467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67041 1308..1467 -
1691679681.7754514-CDS-H-elongata_contig67041:1307..14671691679681.7754514-CDS-H-elongata_contig67041:1307..1467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67041 1308..1467 -
1622931061.0022223-CDS-H-elongata_contig67041:1786..19441622931061.0022223-CDS-H-elongata_contig67041:1786..1944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67041 1787..1944 -
1691679681.788217-CDS-H-elongata_contig67041:1786..19441691679681.788217-CDS-H-elongata_contig67041:1786..1944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67041 1787..1944 -
1622931061.0526125-CDS-H-elongata_contig67041:2422..25401622931061.0526125-CDS-H-elongata_contig67041:2422..2540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67041 2423..2540 -
1691679681.7989008-CDS-H-elongata_contig67041:2422..25401691679681.7989008-CDS-H-elongata_contig67041:2422..2540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67041 2423..2540 -
1622931061.1197915-CDS-H-elongata_contig67041:3112..31441622931061.1197915-CDS-H-elongata_contig67041:3112..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67041 3113..3144 -
1691679681.8072522-CDS-H-elongata_contig67041:3112..31441691679681.8072522-CDS-H-elongata_contig67041:3112..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67041 3113..3144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67041.14312.1

>prot_H-elongata_contig67041.14312.1 ID=prot_H-elongata_contig67041.14312.1|Name=mRNA_H-elongata_contig67041.14312.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MPDPYSFNTKRYERYWLSVMHDDLDLCPETFVVAHGTSADALLRYAERYQ
IWGALLVCPGGELYHAAERHGRAYVWYLIRNNCPWIAIIHGKGDPVMGDD
EARILKDVLVVPSTLYREVEGGEDRFRHRTGPLTEVEQLVAYALTPPVQH
PKEDS*
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mRNA from alignment at H-elongata_contig67041:1225..3188-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67041.14312.1 ID=mRNA_H-elongata_contig67041.14312.1|Name=mRNA_H-elongata_contig67041.14312.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1964bp|location=Sequence derived from alignment at H-elongata_contig67041:1225..3188- (Himanthalia elongata Himel1 dioecious)
AGGAGAAGTTACTAAAGGAAAATATCGAGGCAAGTGTTAAAGATATGCCG
GACCCGTATTCATTCAATACCAAGCGGTGAGACACGTGAGAATTGCCGCT
AGTACAACATGGGGCACTATTCATAGCTACTACCTCAGCGAAGGCTTCAT
CGCTCTCGGTCGTGCCCAAATCTTCTATTAATAGAGTCACAGCTGTTATA
GATCTCTGTTCGCTGAGTGCTATAAATTGACATGTTCCACAAGGGTCCTT
GGATTACAAAAGCTCTTTTGTTTGCCCATTAATGTTGGCATCCTACCTGG
TGCCGGCATGTAGCAGCGGACTCCAGCATGATAGTCTATAGATGTAGTGT
GTCGAAACAAAAGCTATTATAGTTGTCGTTGTTGTTGGTCACACTTTTAG
CAGAAGGAAGAGCCGGATATGGTTGCCTTCTGCTCGTGGTCAGCTGATCA
GGGAAAATATTTTTCCCCTGTCCCCGTTTGCGCCTGAAAAGCATATAATG
CGATGCTAACACCAATCTTCATGAGCTTACGATACCCTGATTTCATGGAT
ATCGCCAACTTTATGTATCACACGACTTGGAACACCAAGCCACTTCATCT
TCGTGAAACACGCTCGATTGCTCGCGGACGCTGACTCTACCTGTACAGGT
ACGAAAGATACTGGCTCAGTGTCATGCACGACGACCTCGACCTCTGCCCC
GAGACCTTTGTAGTTGCGCATGGAACGTCGGCGGACGCACTATTGCGCTA
CGCCGAAAGATACCAGGCGAGGGCGCGTGAGCGTTTCCAGACACCCACGA
ATAGCGCCGCTTGCTAGTAATCAACTTGAGGTGGTGCTTTGTGAGGCGCA
TTTTGAGGTCTGTAATCCGGCCGGAGGCAGTGGTCGACCGTCGCGATCGT
GAGTATTCAGTTAAGTTTTAATCCCGAAGTGGTATGCTGCGCTCGTTGTT
GGCGTATAATTAATCGCTTCCGATCCGTATTATCGCCCCAAATGATCGTT
GTTAAACATCTCGCCGTGGGCGGGTTTAAAAATAAGCCATAGCTGTAGGC
ATATACCGTAAAATGCGACTACCTTTCCGCGATTACGATTGGTCACATTC
CCCCGTTCGCTTGCACGAAGATGGGTACGCGGCGTGGTCGTTTCGTAGTC
ATCCGTCTTGCCATTCGTTGATTACATACGGATTTGTGTGGTGACGTCGG
TGTGTATTTGATCCCGCGATCTTCGCCTGATTCCGAGGCGCCAGATTTGG
GGCGCCCTCCTCGTTTGTCCTGGTGGTGAGCTGTACCACGCGGCAGAGAG
GCACGGCCGTGCATATGTTTGGTATCTCATCAGGAATAATTGCCCATGGA
TAGCTATCATCCACGGAAAGGGAGATCCAGTGATGGGGGACGACGAGGCG
CGGTGAGGCACGAAGCCGTATATGGTTTGAGTCCAGGTCTTCACGGAGGC
GTCCTGCAAAAGTTATTCATATCGCCTCAAAATACAGCTTGTAACAAGAA
GAAGCAGATAAAGCACCCGACCACACGATATATGGGGACTTCGGTGGTTT
ATGGGTTAGACTCCTTCGTCCATGATCCTCTCAAAAGGTACGCTATCCGC
ACGAACGGGAACTCCTTCGCAATGCATCATCAATTTGACGTATTTTTTTA
CCCCCTTCTCGTTTTTCTCTTCCCCCCCCCCCCCGTCGACCTTACCCCAC
TCTAACGTCGGCTGACTGAAGGATCCTCAAGGACGTGCTGGTAGTTCCTT
CTACTCTTTATAGAGAAGTCGAGGGAGGGGAAGATAGGTTTAGGCATCGC
ACCGGACCCTTGACCGAGGTCGAGCAGCTTGTTGCGTATGCGTTGACCCC
TCCGGTTCAACATCCGAAAGAAGACTCTTAACTCATGCATATATCGCTAG
ACCAATGCACGACAGTCTATTATGAAAGAGACAAATTGGATCGTAGGCTG
TGCATCCCCACGGC
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Coding sequence (CDS) from alignment at H-elongata_contig67041:1225..3188-

>mRNA_H-elongata_contig67041.14312.1 ID=mRNA_H-elongata_contig67041.14312.1|Name=mRNA_H-elongata_contig67041.14312.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig67041:1225..3188- (Himanthalia elongata Himel1 dioecious)
ATGCCGGACCCGTATTCATTCAATACCAAGCGATGCCGGACCCGTATTCA
TTCAATACCAAGCGGTACGAAAGATACTGGCTCAGTGTCATGCACGACGA
CCTCGACCTCTGCCCCGAGACCTTTGTAGTTGCGCATGGAACGTCGGCGG
ACGCACTATTGCGCTACGCCGAAAGATACCAGGTACGAAAGATACTGGCT
CAGTGTCATGCACGACGACCTCGACCTCTGCCCCGAGACCTTTGTAGTTG
CGCATGGAACGTCGGCGGACGCACTATTGCGCTACGCCGAAAGATACCAG
ATTTGGGGCGCCCTCCTCGTTTGTCCTGGTGGTGAGCTGTACCACGCGGC
AGAGAGGCACGGCCGTGCATATGTTTGGTATCTCATCAGGAATAATTGCC
CATGGATAGCTATCATCCACGGAAAGGGAGATCCAGTGATGGGGGACGAC
GAGGCGCGATTTGGGGCGCCCTCCTCGTTTGTCCTGGTGGTGAGCTGTAC
CACGCGGCAGAGAGGCACGGCCGTGCATATGTTTGGTATCTCATCAGGAA
TAATTGCCCATGGATAGCTATCATCCACGGAAAGGGAGATCCAGTGATGG
GGGACGACGAGGCGCGGATCCTCAAGGACGTGCTGGTAGTTCCTTCTACT
CTTTATAGAGAAGTCGAGGGAGGGGAAGATAGGTTTAGGCATCGCACCGG
ACCCTTGACCGAGGTCGAGCAGCTTGTTGCGTATGCGTTGACCCCTCCGG
TTCAACATCCGAAAGAAGACTCTTAAGATCCTCAAGGACGTGCTGGTAGT
TCCTTCTACTCTTTATAGAGAAGTCGAGGGAGGGGAAGATAGGTTTAGGC
ATCGCACCGGACCCTTGACCGAGGTCGAGCAGCTTGTTGCGTATGCGTTG
ACCCCTCCGGTTCAACATCCGAAAGAAGACTCTTAA
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