mRNA_H-elongata_contig6704.14311.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6704.14311.1
Unique NamemRNA_H-elongata_contig6704.14311.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6704.14311.1 vs. uniprot
Match: D7G797_ECTSI (Digalactosyldiacylglycerol synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G797_ECTSI)

HSP 1 Score: 747 bits (1929), Expect = 1.810e-256
Identity = 373/499 (74.75%), Postives = 419/499 (83.97%), Query Frame = 3
Query:    6 LPWMTGTSINPLLRAAFLARERDASMVTLMVPFLSPEDQPK-------------------VFPPGIVFGTPEEQELWVRNWLKGAGLEREAERLRMIFYPGRYHKDYGSIFPMGDLTLMIPPEEADVCILEEPEHLNWYRAPGRSWRRAFKHVVGVVHTNYLAYSSGYTVWAPLLTFMLRHMNIIMARAYCHKIIKLSSVIQSLAPEKETVCNVHGVRERFLEVGDEYTHEPRKGGAYFIGKSLWAKGYGRLIDLLDYSHDRLGRTFHLDVYGSGPDREEIEEKAEEKGCDMTFYPATDHALLGHYSVFVNPSVTEVLCTTVAEALAMGKWVVCSRHPSNEFFFQFPNCLPFSTEEDFAACVSWALRHEPEALSPNLRYKLSWAAATERLVEAAAMTVGERSRQKTVADGILAIAHAVVGSGPSGDFVRLLAGADSAAWQNKYVHDQRMQEREVERAR-----KRVTLADAKEESPDGPGSSTCGS-PVGAAAAAVASA 1427
            LPWMTGTSINPLLRAAFLAR RDA MVTLMVPFLS EDQPK                   VFP G+ F TPEEQE+WVRNWL+ AGL RE+ERLR++FYPGRYHKDYGSIFPMGDLTLMIPPEEAD+CILEEPEHLNWYRAPGRSWRR FKHVVGVVHTNYLAYSSGY+VW P+LTFMLR+MNIIMARAYCHKIIKLS VIQSLAPEKETVCNVHGVR++FL+VG EY H+PR GGAYFIGKSLWAKGY RLI+LL+Y++ RLGR FH+DVYGSGPDRE IE K+ EKGCD+TF+PATDH+ LG YSVF+NPSV+EVLCTTVAEALAMGKWVVC+RH SNEFFFQFPNCLPF +EEDFAACVSWALRH+PE L+P LR+KLSWAAATERL +AA M VGER RQK VADG   +AHA  GSGP+GD  RL+AGADSAAWQNK+V++QR  E+E ER++     ++V+  D  E++    GSS   S  + A AAAVASA
Sbjct:   70 LPWMTGTSINPLLRAAFLARGRDADMVTLMVPFLSLEDQPKNRTMAAGVSQQRNNEINPQVFPRGVTFDTPEEQEVWVRNWLEDAGLARESERLRLVFYPGRYHKDYGSIFPMGDLTLMIPPEEADICILEEPEHLNWYRAPGRSWRRTFKHVVGVVHTNYLAYSSGYSVWGPVLTFMLRYMNIIMARAYCHKIIKLSGVIQSLAPEKETVCNVHGVRQKFLDVGQEYAHKPRAGGAYFIGKSLWAKGYDRLINLLEYNNKRLGRAFHMDVYGSGPDREAIEAKSCEKGCDITFFPATDHSELGDYSVFINPSVSEVLCTTVAEALAMGKWVVCARHSSNEFFFQFPNCLPFDSEEDFAACVSWALRHDPEDLTPALRHKLSWAAATERLADAAVMNVGERKRQKPVADGFFTVAHAAAGSGPTGDLFRLVAGADSAAWQNKWVNEQRRLEKEAERSQQAGHERQVSATDGVEDN----GSSRSSSIDMVANAAAVASA 564          
BLAST of mRNA_H-elongata_contig6704.14311.1 vs. uniprot
Match: A0A6H5K0S7_9PHAE (Digalactosyldiacylglycerol synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0S7_9PHAE)

HSP 1 Score: 688 bits (1776), Expect = 1.630e-232
Identity = 337/449 (75.06%), Postives = 374/449 (83.30%), Query Frame = 3
Query:    3 SLPWMTGTSINPLLRAAFLARERDASMVTLMVPFLSPEDQPKVFPPGIVFGTPEEQELWVRNWLKGAGLERE----------AERLRMIFYPGRYHKDYGSIFPMGDLTLMIPPEEADVCILEEPEHLNWYRAPGRSWRRAFKHVVGVVHTNYLAYSSGYTVWAPLLTFMLRHMNIIMARAYCHKIIKLSSVIQSLAPEKETVCNVHGVRERFLEVGDEYTHEPRKGGAYFIGKSLWAKGYGRLIDLLDYSHDRLGRTFHLDVYGSGPDREEIEEKAEEKGCDMTFYPATDHALLGHYSVFVNPSVTEVLCTTVAEALAMGKWVVCSRHPSNEFFFQFPNCLPFSTEEDFAACVSWALRHEPEALSPNLRYKLSWAAATERLVEAAAMTVGERSRQKTVADGILAIAHAVVGSGPSGDFVRLLAGADSAAWQNKYVHDQRMQEREVERA 1319
            SLPWMTGTSINPLLRAAFLAR RDA MVTLM+PFLS +DQPK          P   +L      +G G E            A     +FYPGRYHKDYGSIFPMGDLTLMIPPEEAD+CILEEPEHLNWYRAPGRSWRRAFKHVVGVVHTNYLAYSSGY+VW P+LTFMLR+MNIIMARAYCHKIIKLS VIQSLAPEKETVCNVHGVR++FL+VG EY H+PR  GAYFIGKSLWAKGY RLI LL+Y++ RLGR FH+DVYGSGPDRE IE K+ EKGCD+TF+PATDH+ LG YSVF+NPSV+EVLCTTVAEALAMGKWVVC+RH SNEFFFQFPNCLPF +EEDFAACVSWALRH+PE L+P LR+KLSWAAATERL +AA M VGER RQK VADG   +AHA  GSGP+GD  RL+AGADSAAWQNK+V++QR  E+E ER+
Sbjct:  136 SLPWMTGTSINPLLRAAFLARGRDADMVTLMLPFLSLDDQPKA-------SVPTGGDLRYAGGARGLGAELARGCRIGTGIGALAAENVFYPGRYHKDYGSIFPMGDLTLMIPPEEADICILEEPEHLNWYRAPGRSWRRAFKHVVGVVHTNYLAYSSGYSVWGPVLTFMLRYMNIIMARAYCHKIIKLSGVIQSLAPEKETVCNVHGVRQKFLDVGQEYAHKPRTRGAYFIGKSLWAKGYDRLIGLLEYNNKRLGRAFHMDVYGSGPDREAIEAKSCEKGCDITFFPATDHSELGDYSVFINPSVSEVLCTTVAEALAMGKWVVCARHSSNEFFFQFPNCLPFDSEEDFAACVSWALRHDPEDLTPALRHKLSWAAATERLADAAVMNVGERKRQKPVADGFFTVAHAAAGSGPTGDLFRLVAGADSAAWQNKWVNEQRRLEKEAERS 577          
BLAST of mRNA_H-elongata_contig6704.14311.1 vs. uniprot
Match: A0A835ZE38_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE38_9STRA)

HSP 1 Score: 511 bits (1317), Expect = 4.230e-165
Identity = 247/402 (61.44%), Postives = 305/402 (75.87%), Query Frame = 3
Query:    3 SLPWMTGTSINPLLRAAFLARERDASMVTLMVPFL-SPEDQPKVFPPGIVFGTPEEQELWVRNWLKGAGLEREAERLRMIFYPGRYHKDYGSIFPMGDLTLMIPPEEADVCILEEPEHLNWYRAPGRSWRRAFKHVVGVVHTNYLAYSSGYTVWAPLLTFMLRHMNIIMARAYCHKIIKLSSVIQSLAPEKETVCNVHGVRERFLEVGDEYTHEPRKGGAYFIGKSLWAKGYGRLIDLLDY--SHDRLGRT-FHLDVYGSGPDREEIEEKAEEKGCDMTFYPATDHALLGHYSVFVNPSVTEVLCTTVAEALAMGKWVVCSRHPSNEFFFQFPNCLPFSTEEDFAACVSWALRHEPEALSPNLRYKLSWAAATERLVEAAAMTVGERSRQKTVADGILAIAH 1196
            SLPW+TGTSINPLLRAA L  +RD   VTL++PFL  P+DQ KVFP G+VF + EEQE  VR+WL+GAGL  E++RLR  FY GRY K +GSI P  D+T +IPPEEADVCILEEPEHLNW R PG+ W   F HV+G+VHTNYLAYS+GYTV+APLLTF LR +N ++ R Y  K++KLS+VIQ LAPEKE VCNVHGVR RFLE+GD+Y  +   GGAYFIGKSLWAKGY RL D++ +   HD  G     +D+YGSGPDR  IE +A++    +TF+  TDHA L H+ VFVNPSV+EVLCTT+AEALAM KWVVC+RHPSN FF+QFPNCLPF T E+FA+ +++ALRH+P+ LS  LR+ L+W AAT+RLV  + +TV E   ++   D +    H
Sbjct:  113 SLPWLTGTSINPLLRAAVLTHDRDDGAVTLVLPFLRKPDDQQKVFPKGVVFSSTEEQEQSVRDWLEGAGLGDESKRLRFAFYEGRYDKGFGSILPAEDITKLIPPEEADVCILEEPEHLNWQRPPGQPWTSLFSHVIGIVHTNYLAYSAGYTVFAPLLTFFLRGLNKLVVRGYTDKVVKLSAVIQELAPEKEVVCNVHGVRTRFLEIGDQYARKEHDGGAYFIGKSLWAKGYKRLFDIMKHIKKHDESGLAQLQMDLYGSGPDRAAIERQAKKLHLPVTFHDGTDHANLDHFRVFVNPSVSEVLCTTIAEALAMAKWVVCARHPSNAFFYQFPNCLPFETAEEFASNLAYALRHQPQPLSKELRHMLTWEAATDRLVACSTITVAEFESRRHRMDRMCETGH 514          
BLAST of mRNA_H-elongata_contig6704.14311.1 vs. uniprot
Match: A0A835YK94_9STRA (Digalactosyldiacylglycerol synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK94_9STRA)

HSP 1 Score: 473 bits (1217), Expect = 4.330e-149
Identity = 240/433 (55.43%), Postives = 307/433 (70.90%), Query Frame = 3
Query:    3 SLPWMTGTSINPLLRAAFLARERDASMVTLMVPFLSPEDQPKV-FPPGIVFGTPEEQELWVRNWLKGAGLEREAERLRMIFYPGRYHKDYGSIFPMGDLTLMIPPEEADVCILEEPEHLNWYRAPGRSWRRAFKHVVGVVHTNYLAYSSGYTV-W-APLLTFMLRHMNIIMARAYCHKIIKLSSVIQSLAPEKETVCNVHGVRERFLEVGDEYTHEPRKG-----GAYFIGKSLWAKGYGRLIDLLDYSHDRLGRTFHLDVYGSGPDREEIEEKAEEKGCDMTFYPATDHALLGHYSVFVNPSVTEVLCTTVAEALAMGKWVVCSRHPSNEFFFQFPNCLPFSTEEDFAACVSWALRHEPEALSPNLRYKLSWAAATERLVEAAAMTVGERSRQKTVADGILAIAHAVVGSGPSGDFVRLLAGADSAAWQNKY 1277
            +LPWMTGTS+NPLLRAA+LAR R A MV+LMVPF+  +DQ  + FP    F T EEQ  ++RNWL+ A +  EA+ L +++Y GRY +  G IFPMGD+T +IP EEADVCI+EEPEH+NWYRA G +W + FKHVVGV+HTNY+ Y++   V W A +    +R  N +MARAYC KIIKLS+ +Q  A +KETVCNVHGVRERFL+VGD    + + G     G Y +GK LW KGY RL +L+  S +RLG  F +DVYG+GP+ ++I E+AE     +TF+PATDHA L  Y +FVNPSV+EVLCTT+AEALAMGKWVVC+RH SNEFF+QFPNCLPF  E++F+A V  AL  +P  L+P  R  LSW AATERL++AA +TVGE   ++   D +  + H  +G G  GD VR +  A   + QN Y
Sbjct:  167 ALPWMTGTSVNPLLRAAYLARGRAAGMVSLMVPFIDADDQELLKFPADRRFATKEEQTEYLRNWLRDANMAAEADALHIVWYEGRYLEKMGCIFPMGDITRLIPDEEADVCIMEEPEHINWYRATGTNWSKKFKHVVGVIHTNYVYYAAQDRVNWGANIKGPWVRGFNKLMARAYCDKIIKLSATLQKFAEDKETVCNVHGVRERFLQVGDAAADDIKSGKGFEAGGYMLGKMLWEKGYDRLWELMHASSERLGSCFPVDVYGTGPELDQIRERAEALKLQVTFHPATDHATLSQYRLFVNPSVSEVLCTTIAEALAMGKWVVCARHSSNEFFYQFPNCLPFDGEKEFSANVYRALTKDPAPLTPEQRRTLSWTAATERLIDAAKVTVGESKARRRELDEVAWVFHQNLGEGRRGDTVRKILQAGVVSEQNAY 599          
BLAST of mRNA_H-elongata_contig6704.14311.1 vs. uniprot
Match: A0A7S3XLK2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLK2_HETAK)

HSP 1 Score: 454 bits (1168), Expect = 8.430e-143
Identity = 231/429 (53.85%), Postives = 290/429 (67.60%), Query Frame = 3
Query:    3 SLPWMTGTSINPLLRAAFLARERDASMVTLMVPFLSPEDQPKVFPPGIVFGTPEEQELWVRNWLKG-AGLEREAERLRMIFYPGRYHKDYGSIFPMGDLTLMIPPEEADVCILEEPEHLNWYRAPGRSWRRAFKHVVGVVHTNYLAYSSGYTV-WAPLLTFMLRHMNIIMARAYCHKIIKLSSVIQSLAPEKETVCNVHGVRERFLEVGDEYTHEPRKGGAYFIGKSLWAKGYGRLIDLLDYSHDRLGRTFHLDVYGSGPDREEIEEKAEEKGCDMTFYPATDHALLGHYSVFVNPSVTEVLCTTVAEALAMGKWVVCSRHPSNEFFFQFPNCLPFSTEEDFAACVSWALRHEPEALSPNLRYKLSWAAATERLVEAAAMTVGERSRQKTVADGILAIAHAVVGSGPS-GDFVRLLAGADSAAWQNKYV 1280
            SLPW+TGT++NPLLRAA+LARERD  MVTLMVP+L  EDQ KVFP G  F T E+Q  +V  WL+G A   REA +LR+ FYP RY   YGSIFPMGD+  ++P +EADV ILEEPEH+NW++  G  W   F +V+G++HTNY  Y+ G T+ W       +R +N+ MARAYC +IIKLS+ +Q  APEKE VCNVHG+R+ FLE+GD    EP +GGAYFIGK LW KGY  +++L+ ++  R+G  F LDVYGSGPD+  I+ +   +     F+PA DHA L  Y VF+NPSV+EVLCTT AEAL MGK+ V   HPSN FF  F NCL + T+++F A V WAL H PE LSP  RY L+W AATERLV AAA +     R++   D +    HA VG+    GD  R LAG    A Q  Y+
Sbjct:   88 SLPWLTGTAVNPLLRAAYLARERDPGMVTLMVPWLEEEDQLKVFPGGRTFATEEDQRQYVLAWLRGNAKFRREAAKLRVRFYPARYLPAYGSIFPMGDMLGLVPDDEADVAILEEPEHINWFKPSGEPWTEKFVYVIGIMHTNYQLYARGETLGWFK--EHAVRWLNVWMARAYCDRIIKLSATLQEYAPEKEVVCNVHGIRDAFLEIGDRAALEPPRGGAYFIGKMLWGKGYDLMLELMAHAKRRMGAAFPLDVYGSGPDQAAIQRQFRRRKFPAAFHPAQDHAALEDYKVFINPSVSEVLCTTTAEALGMGKFAVVPDHPSNAFFKSFSNCLMYKTKDEFCANVYWALAHRPEPLSPEDRYALTWEAATERLVRAAATSSAVLGRRREGWDRLARRTHAFVGANNGRGDLFRALAGGGRVAGQAAYM 514          
BLAST of mRNA_H-elongata_contig6704.14311.1 vs. uniprot
Match: A0A4D9CYY8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYY8_9STRA)

HSP 1 Score: 449 bits (1156), Expect = 3.500e-140
Identity = 236/424 (55.66%), Postives = 288/424 (67.92%), Query Frame = 3
Query:    3 SLPWMTGTSINPLLRAAFLARERDASMVTLMVPFLSPEDQPKVFPPGIVFGTPEEQELWVRNWL-KGAGLEREAERLRMIFYPGRYHKDYGSIFPMGDLTLMIPPEEADVCILEEPEHLNWYRAPGRSWRRAFKHVVGVVHTNYLAYSS---GYTVWAPLLTFMLRHMNIIMARAYCHKIIKLSSVIQSLAPEKETVCNVHGVRERFLEVGDEYTHEPRKGGAYFIGKSLWAKGYGRLIDLLDYSHDRLGRTFHLDVYGSGPDREEIEEKAEEKGCDMTFYPATDHALLGHYSVFVNPSVTEVLCTTVAEALAMGKWVVCSRHPSNEFFFQFPNCLPFSTEEDFAACVSWALRHEPEALSPNLRYKLSWAAATERLVEAAAMTVGERSRQKTVADGILAIAHAVVGSGPSGDFVRLLAGADSAA 1262
            SLPWMTGT++NPLLRAA+L+R R A  VTL+VP+L  +DQ  V+P G  F  PE+QE ++R WL   AGL  EA+ LR+ FY GRYH + GSIF +GD+  +IP E+ADV ILEEPEHLNWYRAPG  W R F+HVVG+ HTNYL YS    G ++ +  L FM    N  M RAYCHK+IKLS  +Q  AP KE V NVHGVR  FLE G        +G AYFIGK LW KG  RLI ++ Y+ +R GR+F +DVYGSGPD EEI+ K   +  D+TF+ A DHA L HY VF+NPS++EVLCTTVAEALAMGK+V+ + HPSNEFF +F NCL F  +E+FA  V WAL H P  LS   R  L+W AAT RL++A+ +TVG  S  K   D  L  AH  V  G  GD +R +AG D  A
Sbjct:  117 SLPWMTGTAVNPLLRAAYLSRGRPAGKVTLVVPWLDEDDQKVVYPHGKTFRRPEDQERYIREWLGHRAGLGAEAKNLRIQFYSGRYHPELGSIFSVGDVPALIPDEDADVLILEEPEHLNWYRAPGVPWTRKFRHVVGICHTNYLVYSKSIQGGSMKSAFLFFM----NQWMCRAYCHKVIKLSGALQRFAPGKEEVENVHGVRREFLEAGASVRGSEMEG-AYFIGKMLWPKGMDRLIPMMVYARERDGRSFKMDVYGSGPDEEEIKRKVTARSLDITFHGAVDHAQLTHYKVFINPSISEVLCTTVAEALAMGKFVIIAAHPSNEFFMRFTNCLTFRNKEEFATQVLWALAHVPAPLSAEERESLTWEAATRRLLKASLVTVGTDSHSKV--DKALEKAHTWVSKGERGDRLRRIAGGDIIA 533          
BLAST of mRNA_H-elongata_contig6704.14311.1 vs. uniprot
Match: A0A835Z8T0_9STRA (Digalactosyldiacylglycerol synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8T0_9STRA)

HSP 1 Score: 422 bits (1085), Expect = 1.330e-127
Identity = 211/397 (53.15%), Postives = 268/397 (67.51%), Query Frame = 3
Query:    6 LPWMTGTSINPLLRAAFLARERDASMVTLMVPFLSPEDQPKVFPPGIVFGTPEEQELWVRNWLKGAGLEREAERLRMIFYPGRYHKDYGSIFPMGDLTLMIPPEEADVCILEEPEHLNWYRAPGRSWRRAFKHVVGVVHTNYLAYSSGYTVWAPLLTFMLRHMNIIMARAYCHKIIKLSSVIQSLAPEKETVCNVHGVRERFLEVGD---EYTHEPRK--GGAYFIGKSLWAKGYGRLIDLLDYSHDRLGRTFHLDVYGSGPDREEIEEKAEEKGCDMTFYPATDHALLGHYSVFVNPSVTEVLCTTVAEALAMGKWVVCSRHPSNEFFFQFPNCLPFSTEED-------------------FAACVSWALRHEPEALSPNLRYKLSWAAATERLVE 1124
            +PWMTGTS+NPLLRAAFLAR R    VTL+VP+L  EDQ KV+P G  F T ++Q+ +V  WL  AGL  E  ++ ++FY GRYH  YGSIFPMGDLT ++P EEADVCI+EEPEHLNW+RA G  W   F  VVG++HTNYL Y+ G  V   +   ++R M+  M RA+CH++IKLS+ +Q+ APEKE VCNVHGVRE+FL VG    E+  EP     G YFIGK+LW+KGY +L+ LL       G    +D YG GP ++ I  + +     +TF  A DH  L H+ VFVNPS +EVLCTTVAEALAMGK+VVC+RH SNEFF+QFPNCLPF ++                     F +C+ WA  HEPE L+P+L + L+W+AAT+RLVE
Sbjct:  100 MPWMTGTSVNPLLRAAFLARGRPKGKVTLVVPWLDVEDQAKVYPNGKRFETEQQQDEYVHQWLDEAGLGEEGAKISLMFYKGRYHPSYGSIFPMGDLTALVPDEEADVCIMEEPEHLNWFRAAGVLWTDKFNFVVGIIHTNYLFYA-GQEVGGTIKKEVVRLMSAWMVRAHCHRVIKLSAALQTYAPEKEAVCNVHGVREQFLAVGARIAEHAGEPSPFTEGVYFIGKTLWSKGYDKLLPLLRSYRRHTGENLDMDAYGDGPQKDSIMRRCKRFELGVTFKDAIDHVKLEHHKVFVNPSKSEVLCTTVAEALAMGKFVVCARHESNEFFYQFPNCLPFRSKRXXXXXXXXXXXXXXXXXXXXFVSCMKWAREHEPEPLTPDLHHILTWSAATDRLVE 495          
BLAST of mRNA_H-elongata_contig6704.14311.1 vs. uniprot
Match: A0A0G4H2P9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H2P9_VITBC)

HSP 1 Score: 424 bits (1089), Expect = 7.540e-125
Identity = 227/436 (52.06%), Postives = 285/436 (65.37%), Query Frame = 3
Query:    3 SLPWMTGTSINPLLRAAFLARERDASMVTLMVPFLSPEDQPKVFPPGIVFGTPEEQELWVRNWL-KGAGLEREAERLRMIFYPGRYHKDYGSIFPMGDLTLMIPPEEADVCILEEPEHLNWYRAPGRS---WRRAFKHVVGVVHTNYLAYSSGYT---VWAPLLTFMLRHMNIIMARAYCHKIIKLSSVIQSLAPEKETVCNVHGVRERFLEVGDEYTHEPRKGGAYFIGKSLWAKGYGRLIDLLDYSHDRLGRTFHL--DVYGSGPDREEIEEKAEEKGCDMTFYPATDHALLGHYSVFVNPSVTEVLCTTVAEALAMGKWVVCSRHPSNEFFFQFPNCLPFSTEEDFAACVSWALRHEPEALSPNLRYKLSWAAATERLVEAAAMTVGERSRQKTVADGILAIAHAVVGSGPSGDFVRLLAGAD-SAAWQNKYV 1280
            SLPW TGT++NPLLRAA+L R R +  VTL++P+L  + Q  VFP G  F T +EQ  +V+ WL + AG+  EAE L++ FY  RYH ++GSIFPMGD+T +IP EEADVCILEEPEHLNWYRA G S   W   FKHVVGV+HTNY+ Y+   T   +  P L  M    N  M R+YC +IIKLS  +Q  APEKE  CNVHGVR+ FL++GDE        GAYFIGK+LWAKG+  L DLL Y+  R     H+  DVYGSGPD   I++ A      + F+P  DHA    Y VFVNPS++EVLCTT AEALAMGK+++  RHPSN FF QF NCL +  +E+FAA + WAL++ P  LS + R+ LSW AAT R +EAA +        + + D  LA  H+ +G G  GD VR LAGA    A QN ++
Sbjct:  401 SLPWRTGTAVNPLLRAAYLTRGRPSKYVTLLLPWLEEDQQGIVFPKGKRFKTQDEQARYVKEWLSESAGMAEEAEELQIKFYRSRYHSEFGSIFPMGDITQLIPDEEADVCILEEPEHLNWYRAVGDSIPSWPAKFKHVVGVIHTNYVKYARTETAGFIKEPFLYVM----NQWMCRSYCDRIIKLSDTLQRFAPEKEVTCNVHGVRDDFLQIGDEAAVRGFSKGAYFIGKALWAKGHDMLFDLLKYTRRRANGAGHVSVDVYGSGPDEHSIKQTAHRMKVPVHFFPGVDHAHCKDYKVFVNPSISEVLCTTSAEALAMGKFIIIPRHPSNTFFEQFRNCLTYRDKEEFAANLVWALKNNPVPLSQSERFALSWEAATTRFIEAATVPKAMAQDFRGMLDRRLAELHSWLGRGRHGDLVRYLAGASREIAAQNDFL 832          
BLAST of mRNA_H-elongata_contig6704.14311.1 vs. uniprot
Match: D8LGQ6_ECTSI (Digalactosyldiacylglycerol synthase, family GT4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGQ6_ECTSI)

HSP 1 Score: 408 bits (1049), Expect = 1.080e-124
Identity = 227/480 (47.29%), Postives = 294/480 (61.25%), Query Frame = 3
Query:    3 SLPWMTGTSINPLLRAAFLARERDASMVTLMVPFLSPEDQPKVFPPGIVFGTPEEQELWVRNWLKGAGLEREAERLRMIFYPGRYHKDYGSIFPMGDLTLMIPPEEADVCILEEPEHLNWYRAPGRSWRRAFKHVVGVVHTNYLAYSSGYTV-WAP--LLTFMLRHMNIIMARAYCHKIIKLSSVIQSLAPEKETVCNVHGVRERFLEVGDEYTHEPRKGGA-------YFIGKSLWAKGYGRLIDLLD----------------------------------YSH-----DRL-----GRTFHLDVYGSGPDREEIEEKAEEKGCDMTFYPATDHALLGHYSVFVNPSVTEVLCTTVAEALAMGKWVVCSRHPSNEFFFQFPNCLPFSTEEDFAACVSWALRHEPEALSPNLRYKLSWAAATERLVEAAAMTVGERSRQKTVADGILAIAHAVVGSGPSGDFVRLLAGADSAAWQNKYV 1280
            +LPWMTGTS+NPLLRAA+L R RD   V+LM+P+L  EDQ  V P G  +   E+QE ++R WL+GAG+  EA+ LR+ +Y  RYH+  G IFPMGD+T +IP +EADVCI+EEPEHLNW+RA G +W + F HVVGV+HTNY+ Y+   T  WA   +     R  N IMARAYC K+IKLS+ +Q  A EKETV NVHGVRE FL VGD+      +G         YF+GK LW KGYG+L DLL+                                   +H     D++     G    L  YGSGPD + I E+A   G  + F PATDHA L  Y  FVNPS +EVLCTTVAEALAMGK+VV + H SNEFF+QFPN L F ++E+F   +S+++ +EP  L+P  R+ L W+AAT+RLVE+A +TV E  R++   D    + H  +GSG  GD VR +      A Q+ ++
Sbjct:  140 ALPWMTGTSVNPLLRAAYLTRGRDPGKVSLMIPWLGLEDQHFVLPDGHRYERKEDQEAFIRGWLRGAGMTSEADDLRIAWYDARYHQVAGCIFPMGDITRLIPDDEADVCIMEEPEHLNWFRATGVNWSKKFTHVVGVIHTNYVHYTLADTNHWASGRVKAPFARAFNKIMARAYCDKVIKLSATLQKFAEEKETVTNVHGVRENFLLVGDDRAKAAARGEPFAAGNRPYFLGKMLWEKGYGKLWDLLEGYQAAQNQPDGEEGREASSPAALAEKKTAAAGDHRAHATPAGDKVDAGGDGGGIILGAYGSGPDSDPIRERAAVMGLSVEFNPATDHAELSQYKTFVNPSESEVLCTTVAEALAMGKFVVIAEHASNEFFYQFPNTLKFKSQEEFNEQLSYSMTNEPVPLTPEQRHVLGWSAATDRLVESAKVTVRESLRRRRELDEAAWLFHYYLGSGRRGDRVRKIMAGGVVAGQHAHM 619          
BLAST of mRNA_H-elongata_contig6704.14311.1 vs. uniprot
Match: A0A7S2RWU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RWU6_9STRA)

HSP 1 Score: 393 bits (1009), Expect = 3.340e-121
Identity = 197/378 (52.12%), Postives = 255/378 (67.46%), Query Frame = 3
Query:    3 SLPWMTGTSINPLLRAAFLARERDASMVTLMVPFLSPEDQPKVFPPGIVFGTPEEQELWVRNWL-KGAGLEREAERLRMIFYPGRYHKDYGSIFPMGDLTLMIPPEEADVCILEEPEHLNWYRAPGRSWRRAFKHVVGVVHTNYLAYSSGYT-VWAPLLTFMLRHMNIIMARAYCHKIIKLSSVIQSLAPEKETVCNVHGVRERFLEVGDEYTHEPRKGGAYFIGKSLWAKGYGRLIDLLD-YSH---DRLGRTFHLDVYGSGPDREEIEEKAEEKGCDMTFYPATDHALLGHYSVFVNPSVTEVLCTTVAEALAMGKWVVCSRHPSNEFFFQFPNCLPFSTEEDFAACVSWALRHEPEALSPNLRYKLSWAAATERL 1118
            S+PWMTGT++NPLLRAA L  +R   +VTL++P++  EDQ KVFP GIVF T E+Q   V  WL + A +   A +LR+ FY GRYH+++GSIF MG +  ++P +E D+CILEEPEHLNW+R P   W   F  VVG++HTNY+ Y+      WA    + L      M RAYC+K+IKLS+ +Q+ APEKE V NVHGVR+    +G E   +    GAYF+GK LWAKG+  L  L+  YS+   D  G  F +D+YG+GPD + IE +A E G  +T     DH  L  Y VFVNPS+TEVLCTT AEALAMGKWVVC +HPSN+FF +FP+CL ++T ++FAA V WAL H+P  L P ++ KLSW AA ERL
Sbjct:   92 SVPWMTGTAVNPLLRAAHLTEDRAEGLVTLLLPWVEEEDQRKVFPKGIVFATEEDQRQHVLRWLAEDAHMPTAATKLRIRFYHGRYHREFGSIFSMGSVVSLLPDDETDICILEEPEHLNWFRFPEVGWLDKFNFVVGIIHTNYVVYAGQEKGAWAVPFVWGLSQW---MCRAYCNKVIKLSATLQTYAPEKEVVSNVHGVRDNCFRIGREAELKGFSRGAYFVGKHLWAKGFDHLFRLMKHYSNTVTDGAGGCFPIDLYGTGPDLDAIEHRARETGLPVTVNGYADHMGLKDYRVFVNPSLTEVLCTTTAEALAMGKWVVCPKHPSNDFFAEFPSCLQYTTPDEFAAAVYWALTHDPPPLLPEVKRKLSWEAAMERL 466          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6704.14311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G797_ECTSI1.810e-25674.75Digalactosyldiacylglycerol synthase n=1 Tax=Ectoca... [more]
A0A6H5K0S7_9PHAE1.630e-23275.06Digalactosyldiacylglycerol synthase n=1 Tax=Ectoca... [more]
A0A835ZE38_9STRA4.230e-16561.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YK94_9STRA4.330e-14955.43Digalactosyldiacylglycerol synthase n=1 Tax=Tribon... [more]
A0A7S3XLK2_HETAK8.430e-14353.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CYY8_9STRA3.500e-14055.66Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A835Z8T0_9STRA1.330e-12753.15Digalactosyldiacylglycerol synthase n=1 Tax=Tribon... [more]
A0A0G4H2P9_VITBC7.540e-12552.06Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
D8LGQ6_ECTSI1.080e-12447.29Digalactosyldiacylglycerol synthase, family GT4 n=... [more]
A0A7S2RWU6_9STRA3.340e-12152.12Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6704contigH-elongata_contig6704:325..8754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score742.3
Seed ortholog evalue1.4e-211
Seed eggNOG ortholog2880.D7G797
Preferred nameDGD1
KEGG rclassRC00005,RC00059
KEGG koko:K09480
KEGG ReactionR04469
KEGG Pathwayko00561,ko01100,map00561,map01100
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006664,GO:0006725,GO:0006950,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008194,GO:0008378,GO:0008610,GO:0009058,GO:0009247,GO:0009267,GO:0009507,GO:0009526,GO:0009527,GO:0009536,GO:0009605,GO:0009698,GO:0009699,GO:0009707,GO:0009719,GO:0009725,GO:0009753,GO:0009755,GO:0009808,GO:0009809,GO:0009867,GO:0009941,GO:0009987,GO:0009991,GO:0010033,GO:0010109,GO:0016020,GO:0016036,GO:0016053,GO:0016740,GO:0016757,GO:0016758,GO:0019222,GO:0019374,GO:0019375,GO:0019438,GO:0019748,GO:0019752,GO:0019867,GO:0023052,GO:0031090,GO:0031323,GO:0031407,GO:0031408,GO:0031667,GO:0031668,GO:0031669,GO:0031967,GO:0031968,GO:0031969,GO:0031975,GO:0032787,GO:0032870,GO:0033554,GO:0035250,GO:0042170,GO:0042221,GO:0042548,GO:0042550,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043467,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046394,GO:0046467,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071229,GO:0071310,GO:0071395,GO:0071495,GO:0071496,GO:0071704,GO:0072330,GO:0098588,GO:0098805,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576,GO:1901700,GO:1901701,GO:1903509
EggNOG free text desc.digalactosyldiacylglycerol synthase activity
EggNOG OGs2CMFA@1,2QQ73@2759
EC2.4.1.241
COG Functional cat.S
CAZyGT4
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDigalactosyldiacylglycerol synthase, family GT4
Ec32 orthologEc-04_003640.1
Exons8
Model size3684
Cds size1416
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6704.14311.1prot_H-elongata_contig6704.14311.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6704 2579..8740 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.6935391-UTR-H-elongata_contig6704:324..25781622931060.6935391-UTR-H-elongata_contig6704:324..2578Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6704 325..2578 -
1691679681.6542788-UTR-H-elongata_contig6704:324..25781691679681.6542788-UTR-H-elongata_contig6704:324..2578Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6704 325..2578 -
1622931060.8892045-UTR-H-elongata_contig6704:8740..87541622931060.8892045-UTR-H-elongata_contig6704:8740..8754Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6704 8741..8754 -
1691679681.7537587-UTR-H-elongata_contig6704:8740..87541691679681.7537587-UTR-H-elongata_contig6704:8740..8754Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6704 8741..8754 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.7486932-CDS-H-elongata_contig6704:2578..27401622931060.7486932-CDS-H-elongata_contig6704:2578..2740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 2579..2740 -
1691679681.6676102-CDS-H-elongata_contig6704:2578..27401691679681.6676102-CDS-H-elongata_contig6704:2578..2740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 2579..2740 -
1622931060.7663975-CDS-H-elongata_contig6704:3283..34701622931060.7663975-CDS-H-elongata_contig6704:3283..3470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 3284..3470 -
1691679681.6773698-CDS-H-elongata_contig6704:3283..34701691679681.6773698-CDS-H-elongata_contig6704:3283..3470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 3284..3470 -
1622931060.7842412-CDS-H-elongata_contig6704:4025..42191622931060.7842412-CDS-H-elongata_contig6704:4025..4219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 4026..4219 -
1691679681.686948-CDS-H-elongata_contig6704:4025..42191691679681.686948-CDS-H-elongata_contig6704:4025..4219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 4026..4219 -
1622931060.7985482-CDS-H-elongata_contig6704:4827..50731622931060.7985482-CDS-H-elongata_contig6704:4827..5073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 4828..5073 -
1691679681.6989334-CDS-H-elongata_contig6704:4827..50731691679681.6989334-CDS-H-elongata_contig6704:4827..5073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 4828..5073 -
1622931060.8214178-CDS-H-elongata_contig6704:5874..60281622931060.8214178-CDS-H-elongata_contig6704:5874..6028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 5875..6028 -
1691679681.7127054-CDS-H-elongata_contig6704:5874..60281691679681.7127054-CDS-H-elongata_contig6704:5874..6028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 5875..6028 -
1622931060.833801-CDS-H-elongata_contig6704:6845..70961622931060.833801-CDS-H-elongata_contig6704:6845..7096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 6846..7096 -
1691679681.7253542-CDS-H-elongata_contig6704:6845..70961691679681.7253542-CDS-H-elongata_contig6704:6845..7096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 6846..7096 -
1622931060.845634-CDS-H-elongata_contig6704:7888..79961622931060.845634-CDS-H-elongata_contig6704:7888..7996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 7889..7996 -
1691679681.7341797-CDS-H-elongata_contig6704:7888..79961691679681.7341797-CDS-H-elongata_contig6704:7888..7996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 7889..7996 -
1622931060.8735306-CDS-H-elongata_contig6704:8626..87401622931060.8735306-CDS-H-elongata_contig6704:8626..8740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 8627..8740 -
1691679681.7447526-CDS-H-elongata_contig6704:8626..87401691679681.7447526-CDS-H-elongata_contig6704:8626..8740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6704 8627..8740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6704.14311.1

>prot_H-elongata_contig6704.14311.1 ID=prot_H-elongata_contig6704.14311.1|Name=mRNA_H-elongata_contig6704.14311.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=472bp
MTGTSINPLLRAAFLARERDASMVTLMVPFLSPEDQPKVFPPGIVFGTPE
EQELWVRNWLKGAGLEREAERLRMIFYPGRYHKDYGSIFPMGDLTLMIPP
EEADVCILEEPEHLNWYRAPGRSWRRAFKHVVGVVHTNYLAYSSGYTVWA
PLLTFMLRHMNIIMARAYCHKIIKLSSVIQSLAPEKETVCNVHGVRERFL
EVGDEYTHEPRKGGAYFIGKSLWAKGYGRLIDLLDYSHDRLGRTFHLDVY
GSGPDREEIEEKAEEKGCDMTFYPATDHALLGHYSVFVNPSVTEVLCTTV
AEALAMGKWVVCSRHPSNEFFFQFPNCLPFSTEEDFAACVSWALRHEPEA
LSPNLRYKLSWAAATERLVEAAAMTVGERSRQKTVADGILAIAHAVVGSG
PSGDFVRLLAGADSAAWQNKYVHDQRMQEREVERARKRVTLADAKEESPD
GPGSSTCGSPVGAAAAAVASA*
back to top

mRNA from alignment at H-elongata_contig6704:325..8754-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6704.14311.1 ID=mRNA_H-elongata_contig6704.14311.1|Name=mRNA_H-elongata_contig6704.14311.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8430bp|location=Sequence derived from alignment at H-elongata_contig6704:325..8754- (Himanthalia elongata Himel1 dioecious)
CCAGCTTACCCTGGATGACGGGCACGTCGATCAATCCTCTCTTGAGGGCC GCCTTCCTGGCTCGTGAGAGGGACGCGAGCATGGTGACCCTCATGGTTCC CTTCCTTTCCCCCGAGGACCAGCCAAAGGTCAGTGGGTGGGTGGGTGGGT GGGAGAGCGAAGTGACGAGCGAGTAGCTGGACTATTGCTATTGCTATTGC TATTGCTATCGCCATCGCGATCAAAACAATGGCGCCACAACGATCACACT AACCAACCATCCACACATCCTCAGTGTTTGCGATCGAGAGGATAATAGAA AAGGCGCTTTGACGATGATGCGTTGTGATGTGCTTTGACGGTGATGCGCT TTGACGGTGATGTACGACAGTAAAATTTGCAAGCCGTACAATTGACGAGT AGTTATGAGCGATTCTGTTGGTTGCTGCTGCTGCTGCTGCTGCTGCATAA TTACCTAGATAGGCGTTTTGCTCTTTCTGCCAAAAATCGCGTAATCTTCG AGTCTTTTTAAATAAAACCTATATATATATATATATATATTCATTTTTCT TTCCAAAGCTTGCTTGTGTTAGCTATGTCTCGCATCGCACATCACTTGTC TATAAATTATTTTACTGCCCTTTGTATTGTAGCCCTCCTGTTCTCGTTGT TGTTGTTGTAGACTTTTATTACTCAATGATTCGTGCGGCAGTACTGTCCT ATGATACGACCACCTTGGCCAATCCCGCCGCGTGCTGTGGGGCGGCTCGT TTGACTAGGTTTTTCCTCCCGGGATCGTGTTCGGCACGCCCGAGGAGCAA GAGCTGTGGGTGCGGAACTGGTTAAAAGGTGCGGGTTTGGAGCGGGAGGC GGAGCGCTTACGAATGGTAAGACATCTCTTGCTGCTCAATTGTTTCAGTA AGCGTTTAGGGTGGGTATTAACGGGATTACAAAAGTTTATATTTAATCGA GCTCTGATTGAACGAAGGCTAGGCGTTATTTAGCTTTCGACCAATTACAA CCCGATTTTAATTTAAATCTGCTGGAAATTTTAATTTTTGTATTCCGATA AGACCCAGCCTTAAGTATCGTCCGGGTCTCCCCGAGCAAATATATGTATT ATAGTATAGTATAGCACGTTAAAGAGGTTTTCGCGAAAATGCTACCGCTA AGAAGCATCGGTACCCCTAGCTAGGACCTCGACGATAACATGACTTCGAC ATGACTTCATGTCTGCTAGTTGGCAGAGTAGTACTTTACTTTAGAGGGAC TCTGATAGTATTTAGTACTTGTAGTCAGAGTAACGTATGAAACCAGCATT TTAAGGTAATTTTTGTCCGATCCCCCTACCCTCTCCCCGCCACACGGCAT ATCGGCATATCTGGATGAATCATTTTACTTGGATAAAAAGAGCTGCGATG GAGTAGCGTGGTGTGTAGTGTGTGTAGTGTGTGCAGTGTGTGCAGTGTGT GGTTGGTTCAAGCTTTACAATGAAATAGACAAACCGAGGATGTGGTCCGC CCGCGAGGCCTGTCGAAAGGGAGTATGAACTGCTCTAAAAAGTACGCCGG AACCCGTCCGTCTCCCGTCCCTCCCCGCCTCCGAGAAGAGAATGAAAACT GGCTTTTGTTGGCGACCCCCCCCCCCCACTTACCCTACTTATCTGTTTTC TTTTACAGATATTTTATCCGGGACGTTACCACAAGGACTATGGGAGCATC TTTCCCATGGGCGACCTGACCCTCATGATTCCCCCCGAAGAGGCCGACGT GTGTATCCTGGAGGAGCCCGAGCACCTGAACTGGTACCGTGCTCCCGGAA GGTCCTGGCGAAGAGCCTTCAAGCACGTCGTTGGCGTCGTGCACACCAAT TACCTCGCTTACTCCTCGGGCTACACGGTCTGGGCCCCGCTGCTGACCTT CATGCTACGGTGCTTTCCGCTAGCTAGCTAGCTAATCTGCCTGTCTATCT GTCTCTAGCTGCTTTTCGTTATACCCGCGCGTCCTCTCTCATGTCTCTCA TGTTTATGTAACGTGAACCCCGCACAGAACGCCCCCAGCCCCCTCCCCCC TCCGCCTCCGAATGAGTTTTCTCTGGTTAGCAGAGTCGGGAGTCGTCTTG GACCTAGCTTTCTTTCTTAATAGTAGTATTAATCCTTCTGGAACTTTATT TCAAGTTTAATATTCAATTTATAATGAAAAAACAGATCGAGTTCCGTATG GTTTCATAGTACGGTGTATTTTTTCTATACATATTCCTGTAAAACTCAAA CCCAAAGTAACGAATGTGAATTGAATGGTTTCAATGCCGATTGTTTGATT AGTTTATCCTCAGTTATCAAGAAAAAAATCGTGGGGGGGGATTTATTTTC TGATCCTTTTTTGTATATACTTGTGTGTGTCGAGATGAGGGAGGGCGTAC TCAAGGTTTGAATGCCTTAGCTGCTGTACCATTGACAACACCTTTCTCGG GAGGACGGGGGGGGCGGGGAGGTGTCTACATGCTATAAAGGTTATGATAA AGTGGGGTATAATTATACCGGTATATTCGTTGTAGCAGCACGTGCAGTAC GTTGACGTGAGAGGAGTTCGAAGAAAAAACGGAGGAGTTGAGGGACAGAA GTTGCGACCGACCGCTGCGAATCTGATGCAATTTTACCCTCTCCTCTTGT TCTTACCTCTTACAAGAACCCTTCCCCTTCACCTTGATCGTTCTCTTTTT GGTTCGGCGTATTTGTCTCTCCACAGTCATATGAATATTATAATGGCGCG CGCCTATTGTCACAAGATAATCAAGCTCAGCTCCGTGATCCAGAGCCTTG CGCCGGAGAAGGAGACCGTTTGCAACGTCCATGGTGTGCGCGAAAGGTTC TTGGAAGTAGGAGACGAGTACACCCACGAGGTGTGGTGCTTGGATGGGTA GAGGTTAAAGAGTCGGCGTTACTGCTGCCGAGACTGAAATCACTTTATAA AATAGCGTGCTCGTTCGAAGCATTAATTGCCTCTGATGGTTATGAACTGC AGTATTAAAAGTAGTAACCGAACTGTTAGACATCCCCTGTCCCCTGCGCT CGTGTACCTTCGAAGTCGTGTGGAGAAAAAACAAGAAAAGACGAGTCGGC AATCGACCTACCCCACCCCACGCATACTAGATCCAAGAAGCGTGCTTGCT GCTAAATAAAAGAAAAACAAAACATTCACCTGGCAGCAGTCTTGTTCATT CGTTAAAACTGTCCAACGGTTCGGGGTGAGGGGGGAGGGGTCAGTGTCCC CAGTTAGGAGAGGATAGGTTTAAAATTCGTCCCCTATCGGGGATACAATC ATCGTATCCCCGGTTGTAGTGCCTTACATGGGATACATGGTCACAGTCGA AAATCGGATGAATACCCTTCGTCTCCTGAAGGGAACGGATTGAACATGTC CCCTCCCCAATTCCAGGACGTCTAAGCACACACACCATGTCGTTAGATTG GCACGGACGGGATACTAGTCCCTCGAATCGAACGACCCCCTAGCCTGCGC AAAACAGCAAAATTCATTACTATATTATATATCTATAGTGTTTTGATTTC CGCCTCCGCAGAAAACTCTTGTCGCCACCATCATCCTGCCAACCCCTCTC ACCCCCTGCAATCCCGCCTTCCATCCCCATCCTCACCCTTCTTGCTTTTT GTCTACCACCGGCGTTGGTGGGGGGGCTCAGCCTCGCAAGGGGGGGGCGT ACTTCATCGGCAAGAGCCTTTGGGCCAAGGGATACGGCCGCTTGATCGAT CTCCTTGACTACAGCCACGACCGCCTCGGTCGCACCTTCCACCTGGACGT GTATGGGAGTGGGCCGGACCGCGAGGAGATAGAGGAGAAGGCGGAAGAGA AGGGATGCGACATGACCTTCTATCCTGCCACCGACCACGCCCTGCTGGGG CACTACAGCGTTTTCGTTAACCCTTCGGTGAGAAAGCGAGGTCCTGCTCC ACTGTTGCTCTCTCCTCCGGTACGCCCCCCCCTCTCCCCCCTATACACAC AAGTGAAAATTCATTACGCTCCCGCCTTGCTTTAGGACATATTTTTCCTA TCCTCACTTAGTCAGAGCGGCTTTTGTATGAGAAAACCTGCTTGAGAATT CTTCGATAATGTGTTTTTATTATTATTATCATTTTTATTATTTCTAATAT TTTTATGCTATCAATAAAAAGCCTCTTATTCTCCCTATTCTGCACATCTC GAGCGGAAGGAGATGGTCGCCGTGTACTGTAGATAATTAGCTCGGGTTGG AATCCAAAACGCTGAAAATCAGAAGAACGTGAAAACACTAACTGTACCTC GTGCATTCTCTAGCCTGGGGGGTAGTTTTTCCTCTGGCCTGGCCTGGCCT CCCGTCAAAAGCTCATGACGCTGGTGTTCGATGTGTAATTTCTAACATAA CCGACGCTTTATGTATATCTCGTAGATTTTTTCGGGAGGGGGGGATTGTC AGCTATCCCCCCTGTCAGTACTGCCTTCGACTCCCGACGGGTCTATCCCC CCCGACCCCTTTCCTGCCACCCCCTGCTTCGCCAGGTGACCGAAGTGCTT TGCACGACGGTGGCGGAGGCGTTGGCGATGGGCAAGTGGGTGGTGTGCAG TCGCCATCCCTCGAACGAGTTCTTTTTCCAGTTTCCCAACTGCCTGCCTT TCTCGACGGAGGAAGACTTCGCCGCGTGCGTCAGCTGGGCTCTCCGCCAC GAGCCCGAAGCGCTGTCGCCGAATCTGAGGTTGACACATTTGCCATTCCT TGTAAAGTACCGCATAGCTTGTCTGCGTGTCGCCTTTAATTTTATAATTA TGCGGCTCTTGAGGCCTGCTCCTTTTTATTTCATAAGTAGGTATCGATTA AAGCGAAGAACGCATCCGACCGCAGTATCTTATATTTGAAATCATGGGCC TCTGTTCTAACAGAGTGGTCGCCGATATAGTTCCTGGTGGTTAGCGCGAT TTCGGAACGGGAGTGATGGCCCCGAGATCTATGACCTCACCCGTTGGTGT TCTCGCCTGTTTAACACCACAAGCGGGAATAATATTTGATATGTTTATAG CTTTGACTAGATTGGGTCATCGCTCTCAAGAGAAGGGGCTCTCCGCCCCC CCCATCTCGAACGTCAAGTCATGCATGCTTAGGATGTGTGCTATTTGTTT GTTCGAATGTGTGTGTACATCAATCAGTGCACAGTGAGAAGTAGCCCTCG CGACTTGTTACCGTCTATAGGCCCCCCACCTCCAGCGTTTCTCTGTCGAT CGTCTTCGTCACAACACCCGGAACGTCCTACAAGGTATAAGCTCAGCTGG GCGGCGGCGACGGAGAGATTGGTGGAGGCGGCGGCCATGACCGTGGGAGA GCGAAGTCGGCAAAAAACAGTGGCAGACGGAATCCTCGCTATCGCGCACG CGGTGGTCGGATCCGGACCCAGCGGGGACTTTGTTCGACTACTTGCAGGG GCGGATTCGGCCGCGTGGCAGGTAAGAGAGAGGCGGGGAAGGGGGTGGGA CGATGCGTCGCTCCGGAAGATTTCACGCGTGGGTTCAGCAACGAAGGCTC TTCGGGGCCTGCGTGTTTTGACGGAATGTAGATGGTCATACGCTTCTCAA AACTGGGAGTTCCATGTCGGTGAGAAGCGTTGTAATGCGTTCCGCTGATT ATCGGGAGCTCCTCGCCCAATCCAACGGTGGATACGAAGAGCATGGCGAG AACATAATATCTATAAAAAAATGCTGCGTTGAAAATATTTTGCTCAAGAA CTATTGGAGGACCCCACCCCCCACCCCCCGATTCTTCAATCAAGAAGAAA TTGAAAGCCGGGAAGGGACGGGGATTGGGGTTCTCATAGCGGGCGTTTTC AAACTTTAACAGCCATCCCAACGCGATATTCATATCGATTCGGGGAACGC GTCCTCAAAACACACTCATGTATTATTTCTTTCTACTGACGCGATGTTTA CTCTCCCACCGCACCGCCTCGAACCCTTGTTTCCCACCGCCGCCACGCCC GCGTGAGAGAACAGAACAAGTATGTGCACGACCAGCGGATGCAGGAAAGG GAAGTCGAGCGCGCAAGAAAACGCGTGACTCTTGCGGACGCAAAGGAGGA AAGCCCCGACGGCCCCGGTAGCAGCACCTGCGGATCGCCGGTCGGCGCGG CTGCTGCCGCCGTGGCGAGCGCGTGATCACTATTTTTTTTGTTTCAATAC TCAATACAATACTTGAGGAGGCTCCACGAGGAACTGTCGGGGTTTCGTCG AGACGAGTTATTTCCTGGAGGGCCTGAACCGGAAGAGATCTGAAGGGGGA AGGGGGAATAGGGGTCGTAGGTTAATCTGAACCCCTTTTTGTGGTGCCCA CAGTCCCGTCTGTTTTCATGGTGGCATGAGTAGAGGCCTAAAACATTATT CTTAAGAATCTTACGAAATGAAAAGAGGGTTTGCTCGTGCTGCGCTCGCG AAGCAATCTCGCGTACAAACGGTACGTAACGAAGTCAGTTGCTGGACTGA ACTGGACTGCGTTCGTTTCACGGATTGAGATAGTGATGGTTTTCCCCGCC CTGGTCGTTTCGGTCTGTGTTCGTTTTGAGGTGGCGAGTCACATTTGAAA AACACTGGTCGAAATCGGTCGGTTTCGTGTGCGCGCATCGCTAGACTGTT GACCTGGATTGTGATGTCACGTGTGGCGTCGTTTTGGCTGGTATCGTCTC GAGTTTCCGCGTTCCTCAATTTGCTTGGATGTGTTCGCCTCGAGTCTTTT GTGTATCGGAGCTCTATTGCAAATGTCCCCGTGTATCTTTTCAGAGAAAG AGAAGGAGAGGGGGTGCTACAATACCTCATCGGAATGGGTCGATAAATGT CCCCGGTGAGATCGTTGCCTGCATCCATCCGCGTTATTACGCGACGTGAT GTGTAGAAGCAGGAAAAACAAGATTCGAGAGAATGCGGTCTTTCGAGGGA ATGGAACGCGGCTGAATCTCGTAAAAAACATCGAAACGAAGATTTCCCCC TTCTTCGAGCATGCCCCCCCCCTAAAAACGTCGGTGGGGGATAAATTAGT CAGGGAAAAGCACTCGCCGGTCGTAAATACAGTCCGCTTTTCTTCTGCGG GGAGGAAAGAGGAATGGGGGCGATATCGTCCGTGTGGCTCGTCCATTGGT TTAAACAAAAAATGGGCGTAGATAAATTTTGTACCCCCCCCCTCTCTCAA AGGCACGCTTGTAAGTACAGAAGTTGGGAGAGCTAACGTAATCAATCATA CGCAACATCTATCTTGGGGGGGGGTCTCTGGCTTTCGGTGGTGATTTTGA AAAATTATTGAACGGAGGGAGTGTCATGAGGACGCTCTAGTCTAATCGGA GGGGGGAGGGGCGGGGTTACAAGATTGTGTACCCGTTTGAAGATTCTACG CGGGCGCGCGCTCATTTGTACTGACCTCCATAATGTTTAATGGTTTTCTT TCGCTTTCTCCCTCGTGCACCAATGTGATTAAACCATGCAGTGGTATGAA CGGTAGTGACTGGCCGGCGCGTGGGTGTGTGACCTTCGTCTGCCAGGGTT GCTCGAGCTAAACCTTGCAGTGCCGTCCATGTATATGGATAGAGGTTGCG TGATCTGCATCGTTTGTTCGTCCTGCTACTTTCTTCAAGTCGGTCTCCTA TTGTGGTAGTAATAGTAGTAGCATTAGTAGTAAATAAAACGTTCACACAA CAACAAAAAGAGACTTTTGCGTTCGACGTTCTTCGCGGATTCCTTGTTAG TAAAATGTATTCAACATTTTATAGCAAGGATAACTATATGCTAAAATTAC GACCACCGTAAGGAGTGGCCTCGTAAAAGTAAGGGGTAAGTTAAGGGTGG CGGTTGGTGTGTGTGTGGTCACCGACGTCCTGATCGTGTAGGTCGATCTT CCCAGGGTGCAGCTTTCTAGCTGCTTTGGAGACTTATCATGAAGGGCGAT GATAACTGAAAATAATGAATAATAGTCTGGCTTTTGATTGAAAATAATTT GCTGCAGAGGAACTAGACGATGGTTGGTTTATGTTCAGGTATGGACACCG TTTTTCTCTGAAGGATTGATTTTGCGGGTAATATATAGCTTGAAAGGGGC GAGTATATGTCTGGAGACACTGTAGAAAACTGTCAGTATATCAGGTTTTT AAGAAAGCACACGGCGGCGTCGACTCTACACGGAGGGAGGGAGGAGGGGC ACCCGCAAGGATTGTAATATATTTTGTTTTTATTTTGAAGTGCTATCTTA TATTCCCCTTTCTCTATCCCCCATCTGTTTTCTTGGAAAACCCTGACATT ATACCGTTGACCCGATGAACTTATTATTGGGAACACGATTAATCACATAT GACGATTTTGTGCTAAGTGAGTAACGTACACTTCGAACCTGACGATAGCT GGTCCCCTGGACTGCATCTCTTACAGTGCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6704:325..8754-

>mRNA_H-elongata_contig6704.14311.1 ID=mRNA_H-elongata_contig6704.14311.1|Name=mRNA_H-elongata_contig6704.14311.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2832bp|location=Sequence derived from alignment at H-elongata_contig6704:325..8754- (Himanthalia elongata Himel1 dioecious)
ATGACGGGCACGTCGATCAATCCTCTCTTGAGGGCCGCCTTCCTGGCTCG
TGAGAGGGACGCGAGCATGGTGACCCTCATGGTTCCCTTCCTTTCCCCCG
AGGACCAGCCAAAGATGACGGGCACGTCGATCAATCCTCTCTTGAGGGCC
GCCTTCCTGGCTCGTGAGAGGGACGCGAGCATGGTGACCCTCATGGTTCC
CTTCCTTTCCCCCGAGGACCAGCCAAAGGTTTTTCCTCCCGGGATCGTGT
TCGGCACGCCCGAGGAGCAAGAGCTGTGGGTGCGGAACTGGTTAAAAGGT
GCGGGTTTGGAGCGGGAGGCGGAGCGCTTACGAATGGTTTTTCCTCCCGG
GATCGTGTTCGGCACGCCCGAGGAGCAAGAGCTGTGGGTGCGGAACTGGT
TAAAAGGTGCGGGTTTGGAGCGGGAGGCGGAGCGCTTACGAATGATATTT
TATCCGGGACGTTACCACAAGGACTATGGGAGCATCTTTCCCATGGGCGA
CCTGACCCTCATGATTCCCCCCGAAGAGGCCGACGTGTGTATCCTGGAGG
AGCCCGAGCACCTGAACTGGTACCGTGCTCCCGGAAGGTCCTGGCGAAGA
GCCTTCAAGCACGTCGTTGGCGTCGTGCACACCAATTACCTCGCTTACTC
CTCGGGCTACACGGTCTGGGCCCCGCTGCTGACCTTCATGCTACGATATT
TTATCCGGGACGTTACCACAAGGACTATGGGAGCATCTTTCCCATGGGCG
ACCTGACCCTCATGATTCCCCCCGAAGAGGCCGACGTGTGTATCCTGGAG
GAGCCCGAGCACCTGAACTGGTACCGTGCTCCCGGAAGGTCCTGGCGAAG
AGCCTTCAAGCACGTCGTTGGCGTCGTGCACACCAATTACCTCGCTTACT
CCTCGGGCTACACGGTCTGGGCCCCGCTGCTGACCTTCATGCTACGTCAT
ATGAATATTATAATGGCGCGCGCCTATTGTCACAAGATAATCAAGCTCAG
CTCCGTGATCCAGAGCCTTGCGCCGGAGAAGGAGACCGTTTGCAACGTCC
ATGGTGTGCGCGAAAGGTTCTTGGAAGTAGGAGACGAGTACACCCACGAG
TCATATGAATATTATAATGGCGCGCGCCTATTGTCACAAGATAATCAAGC
TCAGCTCCGTGATCCAGAGCCTTGCGCCGGAGAAGGAGACCGTTTGCAAC
GTCCATGGTGTGCGCGAAAGGTTCTTGGAAGTAGGAGACGAGTACACCCA
CGAGCCTCGCAAGGGGGGGGCGTACTTCATCGGCAAGAGCCTTTGGGCCA
AGGGATACGGCCGCTTGATCGATCTCCTTGACTACAGCCACGACCGCCTC
GGTCGCACCTTCCACCTGGACGTGTATGGGAGTGGGCCGGACCGCGAGGA
GATAGAGGAGAAGGCGGAAGAGAAGGGATGCGACATGACCTTCTATCCTG
CCACCGACCACGCCCTGCTGGGGCACTACAGCGTTTTCGTTAACCCTTCG
CCTCGCAAGGGGGGGGCGTACTTCATCGGCAAGAGCCTTTGGGCCAAGGG
ATACGGCCGCTTGATCGATCTCCTTGACTACAGCCACGACCGCCTCGGTC
GCACCTTCCACCTGGACGTGTATGGGAGTGGGCCGGACCGCGAGGAGATA
GAGGAGAAGGCGGAAGAGAAGGGATGCGACATGACCTTCTATCCTGCCAC
CGACCACGCCCTGCTGGGGCACTACAGCGTTTTCGTTAACCCTTCGGTGA
CCGAAGTGCTTTGCACGACGGTGGCGGAGGCGTTGGCGATGGGCAAGTGG
GTGGTGTGCAGTCGCCATCCCTCGAACGAGTTCTTTTTCCAGTTTCCCAA
CTGCCTGCCTTTCTCGACGGAGGAAGACTTCGCCGCGTGCGTCAGCTGGG
CTCTCCGCCACGAGCCCGAAGCGCTGTCGCCGAATCTGAGGTGACCGAAG
TGCTTTGCACGACGGTGGCGGAGGCGTTGGCGATGGGCAAGTGGGTGGTG
TGCAGTCGCCATCCCTCGAACGAGTTCTTTTTCCAGTTTCCCAACTGCCT
GCCTTTCTCGACGGAGGAAGACTTCGCCGCGTGCGTCAGCTGGGCTCTCC
GCCACGAGCCCGAAGCGCTGTCGCCGAATCTGAGGTATAAGCTCAGCTGG
GCGGCGGCGACGGAGAGATTGGTGGAGGCGGCGGCCATGACCGTGGGAGA
GCGAAGTCGGCAAAAAACAGTGGCAGACGGAATCCTCGCTATCGCGCACG
CGGTGGTCGGATCCGGACCCAGCGGGGACTTTGTTCGACTACTTGCAGGG
GCGGATTCGGCCGCGTGGCAGGTATAAGCTCAGCTGGGCGGCGGCGACGG
AGAGATTGGTGGAGGCGGCGGCCATGACCGTGGGAGAGCGAAGTCGGCAA
AAAACAGTGGCAGACGGAATCCTCGCTATCGCGCACGCGGTGGTCGGATC
CGGACCCAGCGGGGACTTTGTTCGACTACTTGCAGGGGCGGATTCGGCCG
CGTGGCAGAACAAGTATGTGCACGACCAGCGGATGCAGGAAAGGGAAGTC
GAGCGCGCAAGAAAACGCGTGACTCTTGCGGACGCAAAGGAGGAAAGCCC
CGACGGCCCCGGTAGCAGCACCTGCGGATCGCCGGTCGGCGCGGCTGCTG
CCGCCGTGGCGAGCGCGTGAAACAAGTATGTGCACGACCAGCGGATGCAG
GAAAGGGAAGTCGAGCGCGCAAGAAAACGCGTGACTCTTGCGGACGCAAA
GGAGGAAAGCCCCGACGGCCCCGGTAGCAGCACCTGCGGATCGCCGGTCG
GCGCGGCTGCTGCCGCCGTGGCGAGCGCGTGA
back to top