mRNA_H-elongata_contig67039.14310.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67039.14310.1
Unique NamemRNA_H-elongata_contig67039.14310.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67039.14310.1 vs. uniprot
Match: A0A6H5JEL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL4_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.130e-19
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 LSKVKVTVSSGRVQLYRASIHVTPQLKGLPWLMYDWFYSTLVAGVIFITSIEVMLIGFVYFFFF 192
            L+K +VTVSSGRVQ Y +SI++TPQLKGLPWLM+D+FYSTL AGV+FI S+E+ML GF Y FFF
Sbjct:  267 LTKARVTVSSGRVQFYSSSINITPQLKGLPWLMHDFFYSTLAAGVLFIASLELMLFGFCYVFFF 330
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67039.14310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JEL4_9PHAE4.130e-1971.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67039contigH-elongata_contig67039:2..1401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAdipose-regulatory protein, Seipin
Ec32 orthologEc-20_000180.1
Exons2
Model size1074
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67039.14310.1prot_H-elongata_contig67039.14310.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67039 424..1116 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.5997179-UTR-H-elongata_contig67039:1..761622931060.5997179-UTR-H-elongata_contig67039:1..76Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67039 2..76 +
1691679681.6049922-UTR-H-elongata_contig67039:1..761691679681.6049922-UTR-H-elongata_contig67039:1..76Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67039 2..76 +
1622931060.6217241-UTR-H-elongata_contig67039:402..4231622931060.6217241-UTR-H-elongata_contig67039:402..423Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67039 403..423 +
1691679681.614364-UTR-H-elongata_contig67039:402..4231691679681.614364-UTR-H-elongata_contig67039:402..423Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67039 403..423 +
1622931060.647091-UTR-H-elongata_contig67039:1116..14011622931060.647091-UTR-H-elongata_contig67039:1116..1401Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67039 1117..1401 +
1691679681.6401668-UTR-H-elongata_contig67039:1116..14011691679681.6401668-UTR-H-elongata_contig67039:1116..1401Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67039 1117..1401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.635453-CDS-H-elongata_contig67039:423..11161622931060.635453-CDS-H-elongata_contig67039:423..1116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67039 424..1116 +
1691679681.6230288-CDS-H-elongata_contig67039:423..11161691679681.6230288-CDS-H-elongata_contig67039:423..1116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67039 424..1116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67039.14310.1

>prot_H-elongata_contig67039.14310.1 ID=prot_H-elongata_contig67039.14310.1|Name=mRNA_H-elongata_contig67039.14310.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp
MYDWFYSTLVAGVIFITSIEVMLIGFVYFFFFAGSRKEHSPRSSRRQSRV
TIRAAAGRHASAPASSTPGAGARATAAGEVLAENNEGLRRRSVPSSSSER
QEMPPGVQAYQRGVKYEMRDGRGSGTSTGTYERPREGGPKRSDPPGRVDT
QERAQSAAMASWVALEGNLDGDGGEGKMEGKLMTGNSAIVENESVINEGH
VSMIQPEGDEFGVSSVVREEHGEGAVGGNQ*
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mRNA from alignment at H-elongata_contig67039:2..1401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67039.14310.1 ID=mRNA_H-elongata_contig67039.14310.1|Name=mRNA_H-elongata_contig67039.14310.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1400bp|location=Sequence derived from alignment at H-elongata_contig67039:2..1401+ (Himanthalia elongata Himel1 dioecious)
TTGAGTAAAGTGAAAGTCACCGTTTCGAGCGGCCGTGTGCAGTTGTACCG
AGCATCGATACACGTCACACCCCAGGTGGGAGTTTCGACCATGTATTAAA
CGTCTTCTATGACCCTCCCTTGTTTCCTAACTCGCCATGCGGACGAATAT
GTTGCCTCCTTGATGCTCAACTTAAGACCATGGGCACGAAGCGTAACTTA
TAAACGTGTTCAACATTTGGTGCATCTTTTGGTATTTCCAATTTGTGCCT
CGTGTAGAAGTTCCTCAACAAAGGGTTCAAACCCCCGTCTAATGGCCCAA
TTGCGAAAAAGTAACATAACCTTCTGGTTTAACGTGTCACCATAATCACG
GCTCCTTCTCCCTTCTAATACTATCGTGGGACACAATACCAACGTCCCCA
GCTGAAGGGATTGCCGTGGCTGATGTACGACTGGTTTTACTCGACACTTG
TGGCGGGCGTCATCTTCATAACATCCATTGAGGTTATGCTCATCGGGTTT
GTCTACTTTTTTTTCTTCGCGGGCTCGAGAAAAGAACACTCACCGCGCAG
CAGCCGCAGGCAAAGCAGAGTCACCATTAGAGCGGCCGCCGGTCGGCACG
CAAGCGCTCCCGCATCGTCCACCCCGGGTGCTGGAGCAAGAGCAACTGCA
GCGGGCGAGGTGTTAGCTGAAAACAACGAAGGCCTGCGCCGGAGAAGCGT
ACCTTCTTCGTCATCTGAGAGGCAGGAAATGCCACCCGGAGTCCAGGCAT
ACCAGCGAGGCGTGAAGTACGAGATGAGAGATGGCAGAGGCAGTGGAACA
TCAACGGGGACTTATGAAAGACCGCGAGAAGGGGGTCCGAAACGCAGTGA
CCCACCTGGGCGTGTTGACACGCAAGAAAGGGCGCAATCGGCAGCCATGG
CGTCATGGGTTGCGTTAGAGGGAAATCTGGACGGTGATGGTGGGGAAGGA
AAAATGGAAGGGAAACTGATGACGGGTAATAGCGCCATCGTGGAAAATGA
AAGCGTCATTAACGAGGGCCATGTTTCGATGATCCAACCAGAGGGCGATG
AGTTCGGGGTCTCAAGCGTCGTGCGTGAAGAACATGGCGAAGGTGCTGTG
GGAGGCAATCAGTGATCCCAAGGTCATTCCACGATGGACGATCCTGACTC
AGGCAACCGATGTGAACGGTAGATACGGCGTTTTCGTGCTTTCTCTACAG
CATCACGTGGTGCAGAGCTCAGGAACTCTTCTAGAGCTACGCATTGATAC
GGCAAACCAGGGGGATTTTGTGCCTGCTATACACTATGTGATGTACTTCT
GTGTCAGGTCCTCAATGGAAGGCTTGGACGATGCGCTGAAGACAGGCAGA
ACAAAGGCTGTCAGTAGGTTAGGGGAGCGGGGTATAAATAAATAGGGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig67039:2..1401+

>mRNA_H-elongata_contig67039.14310.1 ID=mRNA_H-elongata_contig67039.14310.1|Name=mRNA_H-elongata_contig67039.14310.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1386bp|location=Sequence derived from alignment at H-elongata_contig67039:2..1401+ (Himanthalia elongata Himel1 dioecious)
ATGTACGACTGGTTTTACTCGACACTTGTGGCGGGCGTCATCTTCATAAC
ATCCATTGAGGTTATGCTCATCGGGTTTGTCTACTTTTTTTTCTTCGCGG
GCTCGAGAAAAGAACACTCACCGCGCAGCAGCCGCAGGCAAAGCAGAGTC
ACCATTAGAGCGGCCGCCGGTCGGCACGCAAGCGCTCCCGCATCGTCCAC
CCCGGGTGCTGGAGCAAGAGCAACTGCAGCGGGCGAGGTGTTAGCTGAAA
ACAACGAAGGCCTGCGCCGGAGAAGCGTACCTTCTTCGTCATCTGAGAGG
CAGGAAATGCCACCCGGAGTCCAGGCATACCAGCGAGGCGTGAAGTACGA
GATGAGAGATGGCAGAGGCAGTGGAACATCAACGGGGACTTATGAAAGAC
CGCGAGAAGGGGGTCCGAAACGCAGTGACCCACCTGGGCGTGTTGACACG
CAAGAAAGGGCGCAATCGGCAGCCATGGCGTCATGGGTTGCGTTAGAGGG
AAATCTGGACGGTGATGGTGGGGAAGGAAAAATGGAAGGGAAACTGATGA
CGGGTAATAGCGCCATCGTGGAAAATGAAAGCGTCATTAACGAGGGCCAT
GTTTCGATGATCCAACCAGAGGGCGATGAGTTCGGGGTCTCAAGCGTCGT
GCGTGAAGAACATGGCGAAGGTGCTGTGGGAGGCAATCAGTGAATGTACG
ACTGGTTTTACTCGACACTTGTGGCGGGCGTCATCTTCATAACATCCATT
GAGGTTATGCTCATCGGGTTTGTCTACTTTTTTTTCTTCGCGGGCTCGAG
AAAAGAACACTCACCGCGCAGCAGCCGCAGGCAAAGCAGAGTCACCATTA
GAGCGGCCGCCGGTCGGCACGCAAGCGCTCCCGCATCGTCCACCCCGGGT
GCTGGAGCAAGAGCAACTGCAGCGGGCGAGGTGTTAGCTGAAAACAACGA
AGGCCTGCGCCGGAGAAGCGTACCTTCTTCGTCATCTGAGAGGCAGGAAA
TGCCACCCGGAGTCCAGGCATACCAGCGAGGCGTGAAGTACGAGATGAGA
GATGGCAGAGGCAGTGGAACATCAACGGGGACTTATGAAAGACCGCGAGA
AGGGGGTCCGAAACGCAGTGACCCACCTGGGCGTGTTGACACGCAAGAAA
GGGCGCAATCGGCAGCCATGGCGTCATGGGTTGCGTTAGAGGGAAATCTG
GACGGTGATGGTGGGGAAGGAAAAATGGAAGGGAAACTGATGACGGGTAA
TAGCGCCATCGTGGAAAATGAAAGCGTCATTAACGAGGGCCATGTTTCGA
TGATCCAACCAGAGGGCGATGAGTTCGGGGTCTCAAGCGTCGTGCGTGAA
GAACATGGCGAAGGTGCTGTGGGAGGCAATCAGTGA
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