mRNA_H-elongata_contig67018.14309.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67018.14309.1
Unique NamemRNA_H-elongata_contig67018.14309.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig67018.14309.1 vs. uniprot
Match: D7FTL8_ECTSI (Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL8_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.590e-29
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 EEEIPGFTDPLRWLRYFPPRGREDMKGFGTAVDWRRSFVTTSVNPYYDSFIRWQFNTLK 177
            E+EI  FTDPL+WL YFPPRGR+DM  FGTAVDWRRSFVTTSVNPYYDSFIRWQFNTLK
Sbjct:  212 EDEIRNFTDPLKWLEYFPPRGRDDMIKFGTAVDWRRSFVTTSVNPYYDSFIRWQFNTLK 270
[Close]
BLAST of mRNA_H-elongata_contig67018.14309.1 vs. uniprot
Match: A0A7S2UVZ9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVZ9_9STRA)

HSP 1 Score: 112 bits (281), Expect = 9.400e-28
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 EEEIPGFTDPLRWLRYFPPRGREDMKGFGTAVDWRRSFVTTSVNPYYDSFIRWQFNTLK 177
            ++EIP F DPL+WL YFPP G +D+KGFGT VDWRRSF+TTS NPYYD+F+RWQFNTL+
Sbjct:   15 QDEIPAFVDPLKWLEYFPPYGMQDLKGFGTGVDWRRSFITTSANPYYDAFVRWQFNTLR 73
[Close]
BLAST of mRNA_H-elongata_contig67018.14309.1 vs. uniprot
Match: A0A835YRC2_9STRA (Leucine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC2_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.150e-27
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 EEEIPGFTDPLRWLRYFPPRGREDMKGFGTAVDWRRSFVTTSVNPYYDSFIRWQFNTLK 177
            E+EI  FTDPL+WL+YFPP G+ D++ FG AVDWRRSF+TT+VNPYYDSFIRWQFNTLK
Sbjct:  165 EDEISAFTDPLQWLKYFPPHGKADLERFGAAVDWRRSFITTAVNPYYDSFIRWQFNTLK 223
[Close]
BLAST of mRNA_H-elongata_contig67018.14309.1 vs. uniprot
Match: UPI0000453172 (leucyl-tRNA synthetase n=1 Tax=Cryptosporidium hominis (strain TU502) TaxID=353151 RepID=UPI0000453172)

HSP 1 Score: 104 bits (260), Expect = 2.130e-26
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 EEEIPGFTDPLRWLRYFPPRGREDMKGFGTAVDWRRSFVTTSVNPYYDSFIRWQFNTLKV 180
            EEEI  FTDP+ W  YFPP  ++D+K FGTAVDWRRSF+TT +NPYYD+F++WQF TLKV
Sbjct:  157 EEEISKFTDPIYWTEYFPPLTKKDLKNFGTAVDWRRSFITTDINPYYDAFVKWQFRTLKV 216
[Close]
BLAST of mRNA_H-elongata_contig67018.14309.1 vs. uniprot
Match: A0A7S3LYW7_9STRA (Leucine--tRNA ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LYW7_9STRA)

HSP 1 Score: 105 bits (262), Expect = 6.260e-25
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    4 EEIPGFTDPLRWLRYFPPRGREDMKGFGTAVDWRRSFVTTSVNPYYDSFIRWQFNTL 174
            EEIP F DP++WL YFPP G ED+K FG+A+DWRRSF+TTSV+P YDSFIRWQFNTL
Sbjct:  174 EEIPEFADPMKWLNYFPPLGVEDLKEFGSAIDWRRSFITTSVSPVYDSFIRWQFNTL 230
[Close]
BLAST of mRNA_H-elongata_contig67018.14309.1 vs. uniprot
Match: A0A7S0GHA7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHA7_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.490e-25
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    4 EEIPGFTDPLRWLRYFPPRGREDMKGFGTAVDWRRSFVTTSVNPYYDSFIRWQFNTLK 177
            E IP F DPL WL YFPPRG   +  FG  VDWRRSF+TT+VNPYYD+FIRWQF TL+
Sbjct:   33 ELIPSFIDPLVWLSYFPPRGVTHLNNFGAGVDWRRSFITTAVNPYYDAFIRWQFETLR 90
[Close]
BLAST of mRNA_H-elongata_contig67018.14309.1 vs. uniprot
Match: A0A2P4Z1D2_9CRYT (Leucine--tRNA ligase n=6 Tax=Cryptosporidium TaxID=5806 RepID=A0A2P4Z1D2_9CRYT)

HSP 1 Score: 105 bits (261), Expect = 8.540e-25
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 EEEIPGFTDPLRWLRYFPPRGREDMKGFGTAVDWRRSFVTTSVNPYYDSFIRWQFNTLKVISNAI 195
            EEEI  FTDP+ W  YFPP  ++D+K FGTAVDWRRSF+TT +NPYYD+F++WQF TLK+  + I
Sbjct:  157 EEEISKFTDPIYWTEYFPPLTKKDLKNFGTAVDWRRSFITTDINPYYDAFVKWQFRTLKIKKDKI 221
[Close]
BLAST of mRNA_H-elongata_contig67018.14309.1 vs. uniprot
Match: A0A7R9UHB7_9STRA (Leucine--tRNA ligase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UHB7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.960e-24
Identity = 43/59 (72.88%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 EEEIPGFTDPLRWLRYFPPRGREDMKGFGTAVDWRRSFVTTSVNPYYDSFIRWQFNTLK 177
            E EIP F DPL+WL+YFPP G  D+K FG A DWRRSF+TTSVNPYYDSFIRWQF  L+
Sbjct:  103 EAEIPEFVDPLKWLQYFPPYGMVDLKAFGVASDWRRSFITTSVNPYYDSFIRWQFAKLR 161
[Close]
BLAST of mRNA_H-elongata_contig67018.14309.1 vs. uniprot
Match: A2F0M3_TRIVA (Leucine--tRNA ligase n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2F0M3_TRIVA)

HSP 1 Score: 102 bits (255), Expect = 3.560e-24
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 EEEIPGFTDPLRWLRYFPPRGREDMKGFGTAVDWRRSFVTTSVNPYYDSFIRWQFNTLK 177
            E EIP F DPL+WL YFPP G +DMK FG AVDWRRSF+TT VNPY+D+F++WQF  LK
Sbjct:  155 ENEIPEFVDPLKWLHYFPPYGVKDMKQFGAAVDWRRSFITTDVNPYFDAFVKWQFRILK 213
[Close]
BLAST of mRNA_H-elongata_contig67018.14309.1 vs. uniprot
Match: A0A078B9F5_STYLE (Leucine--tRNA ligase n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B9F5_STYLE)

HSP 1 Score: 103 bits (256), Expect = 4.050e-24
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 EEEIPGFTDPLRWLRYFPPRGREDMKGFGTAVDWRRSFVTTSVNPYYDSFIRWQFNTLK 177
            EE+IP F DPL WL +FPP G +D+K FG   DWRRSF+TT VNP+YDSF++WQFNTLK
Sbjct:  154 EEDIPKFQDPLHWLHFFPPHGMQDLKDFGLYTDWRRSFITTEVNPFYDSFVQWQFNTLK 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67018.14309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTL8_ECTSI1.590e-2986.44Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S2UVZ9_9STRA9.400e-2872.88Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
A0A835YRC2_9STRA3.150e-2776.27Leucine--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
UPI00004531722.130e-2668.33leucyl-tRNA synthetase n=1 Tax=Cryptosporidium hom... [more]
A0A7S3LYW7_9STRA6.260e-2575.44Leucine--tRNA ligase n=1 Tax=Spumella elongata Tax... [more]
A0A7S0GHA7_9STRA8.490e-2568.97Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A2P4Z1D2_9CRYT8.540e-2563.08Leucine--tRNA ligase n=6 Tax=Cryptosporidium TaxID... [more]
A0A7R9UHB7_9STRA2.960e-2472.88Leucine--tRNA ligase n=1 Tax=Pinguiococcus pyrenoi... [more]
A2F0M3_TRIVA3.560e-2469.49Leucine--tRNA ligase n=1 Tax=Trichomonas vaginalis... [more]
A0A078B9F5_STYLE4.050e-2467.80Leucine--tRNA ligase n=1 Tax=Stylonychia lemnae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67018contigH-elongata_contig67018:101..298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue4.9e-25
Seed eggNOG ortholog2880.D7FTL8
Preferred nameLARS
KEGG rclassRC00055,RC00523
KEGG koko:K01869
KEGG ReactionR03657
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000323,GO:0001101,GO:0003674,GO:0003824,GO:0004812,GO:0004819,GO:0004823,GO:0004832,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005773,GO:0005783,GO:0005829,GO:0005911,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006425,GO:0006429,GO:0006438,GO:0006518,GO:0006520,GO:0006605,GO:0006622,GO:0006623,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0007034,GO:0007041,GO:0007154,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009267,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009719,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010467,GO:0010506,GO:0010507,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0019222,GO:0019538,GO:0019752,GO:0023051,GO:0023056,GO:0030054,GO:0030234,GO:0030695,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032535,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034198,GO:0034613,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0042594,GO:0042886,GO:0043038,GO:0043039,GO:0043043,GO:0043085,GO:0043087,GO:0043170,GO:0043200,GO:0043201,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043547,GO:0043603,GO:0043604,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0060589,GO:0061462,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090066,GO:0090304,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533,GO:1903432,GO:1904263,GO:1990253,GO:1990928
EggNOG free text desc.leucyl-tRNA aminoacylation
EggNOG OGsCOG0495@1,KOG0437@2759
EC6.1.1.4
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.5564127-CDS-H-elongata_contig67018:100..2981622931060.5564127-CDS-H-elongata_contig67018:100..298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67018 101..298 -
1691679681.589195-CDS-H-elongata_contig67018:100..2981691679681.589195-CDS-H-elongata_contig67018:100..298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67018 101..298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67018.14309.1prot_H-elongata_contig67018.14309.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67018 101..298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67018.14309.1

>prot_H-elongata_contig67018.14309.1 ID=prot_H-elongata_contig67018.14309.1|Name=mRNA_H-elongata_contig67018.14309.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
EEEIPGFTDPLRWLRYFPPRGREDMKGFGTAVDWRRSFVTTSVNPYYDSF
IRWQFNTLKVISNAI*
back to top

mRNA from alignment at H-elongata_contig67018:101..298-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67018.14309.1 ID=mRNA_H-elongata_contig67018.14309.1|Name=mRNA_H-elongata_contig67018.14309.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig67018:101..298- (Himanthalia elongata Himel1 dioecious)
GAGGAGGAGATCCCCGGCTTCACGGACCCGCTCCGGTGGCTGCGGTACTT
CCCCCCCAGGGGCCGCGAGGACATGAAGGGCTTCGGCACCGCGGTGGACT
GGCGACGATCGTTTGTAACGACCTCCGTCAACCCTTACTACGACAGCTTC
ATTCGGTGGCAGTTCAACACGCTCAAGGTGATTTCCAATGCGATATAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig67018:101..298-

>mRNA_H-elongata_contig67018.14309.1 ID=mRNA_H-elongata_contig67018.14309.1|Name=mRNA_H-elongata_contig67018.14309.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig67018:101..298- (Himanthalia elongata Himel1 dioecious)
GAGGAGGAGATCCCCGGCTTCACGGACCCGCTCCGGTGGCTGCGGTACTT
CCCCCCCAGGGGCCGCGAGGACATGAAGGGCTTCGGCACCGCGGTGGACT
GGCGACGATCGTTTGTAACGACCTCCGTCAACCCTTACTACGACAGCTTC
ATTCGGTGGCAGTTCAACACGCTCAAGGTGATTTCCAATGCGATATAGGA
GGAGGAGATCCCCGGCTTCACGGACCCGCTCCGGTGGCTGCGGTACTTCC
CCCCCAGGGGCCGCGAGGACATGAAGGGCTTCGGCACCGCGGTGGACTGG
CGACGATCGTTTGTAACGACCTCCGTCAACCCTTACTACGACAGCTTCAT
TCGGTGGCAGTTCAACACGCTCAAGGTGATTTCCAATGCGATATAG
back to top