mRNA_H-elongata_contig66988.14300.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66988.14300.1 vs. uniprot
Match: A0A6H5JYF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF8_9PHAE) HSP 1 Score: 258 bits (658), Expect = 1.820e-81 Identity = 154/302 (50.99%), Postives = 181/302 (59.93%), Query Frame = 1
Query: 1 SMTVSGTTGGKIEPGLSSFAESPKDAAMHMLPLLSRVTYLVPKERHPRTRVFIKSTAGMRLLPEETQNAIYDEIYNGLLGHPEFPFALRRGDLGTIDGDKEAFYAVLSANYIKGRIDARLHPTGHESGAVGALDMAGGASTQIIFRHIKQSILSPVEESVEWDVREGDGVMGK---------------GN-DAASEECQNQAEAGEK---------------------------RGWEPIGPVSEDDFWGASHLGYGVAEVRAKVWSYLVERHAESAGSSSASGSERNVVNPCSFVNRVDVW 777
S+ SG+ GGKI+PGLSSFA SPKDAA +MLPLL++ + LVP+ERHP T+V IKSTAGMRLLP E Q IYDEIY L+G+P FPFA+ RGD+GT+DGD EAFYAVLSAN++ GRIDA +HPTGH SG +GALDM GGASTQIIFRH + E + E + E D + GN D S + G + RG PVS DFWGASHLGYGVAEVR ++W LVE G G +VVNPCSFV RVD W
Sbjct: 24 SLKFSGSAGGKIKPGLSSFAASPKDAAAYMLPLLAKASELVPRERHPTTKVLIKSTAGMRLLPLEAQEGIYDEIYAALVGNPLFPFAIDRGDVGTLDGDMEAFYAVLSANFLAGRIDALMHPTGHASGEIGALDM-GGASTQIIFRH---NAAGRPEHADEVEAAENDARNDRPCCHQEPSPAVANYDGNTDTTSSSTTACSPRGSRSAVPTRDRNGTCTVAEGEGGCADGQGGRGRVDTVPVSRADFWGASHLGYGVAEVRLRMWDLLVETPRVPEGDGHGHG---DVVNPCSFVGRVDEW 318
BLAST of mRNA_H-elongata_contig66988.14300.1 vs. uniprot
Match: D7FJZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ4_ECTSI) HSP 1 Score: 255 bits (651), Expect = 1.380e-78 Identity = 153/299 (51.17%), Postives = 180/299 (60.20%), Query Frame = 1
Query: 1 SMTVSGTTGGKIEPGLSSFAESPKDAAMHMLPLLSRVTYLVPKERHPRTRVFIKSTAGMRLLPEETQNAIYDEIYNGLLGHPEFPFALRRGDLGTIDGDKEAFYAVLSANYIKGRIDARLHPTGHESGAVGALDMAGGASTQIIFRH--IKQSILSPVEESVEWDVREG---------------DG----------------------VMGKGNDAASEECQNQAEAGEK-RGWEPIGPVSEDDFWGASHLGYGVAEVRAKVWSYLVERHAESAGSSSASGSERNVVNPCSFVNRVDVW 777
S+ SG GGKIEPGLSSFA SPKDAA +MLPLL++ + LVP+ERHP T+V IKSTAGMRLLP E Q AIYDE++ L+G+P FPFA+ RGD+GT+DGD EAFYAVLSAN++ GRIDA +HPTGH SG +GALDM GGASTQIIFRH + + +E+ E D R DG + E + GE RG PVS DFWGASHLGYGVAEVR ++W LVE G +VVNPCSFV RVD W
Sbjct: 8 SLKFSGAAGGKIEPGLSSFAASPKDAAEYMLPLLAKASELVPRERHPATKVLIKSTAGMRLLPLEVQEAIYDEVHAALVGNPLFPFAVDRGDVGTLDGDMEAFYAVLSANFLAGRIDALMHPTGHASGEIGALDM-GGASTQIIFRHKAAGRPEHADEDEAAENDARNDRPCYHQQPSAAVANYDGNTNXXXXXXXXCSPRGSSSVVPTRDRNGTCTVPEGEGGCADGEGGRGPVDTVPVSRADFWGASHLGYGVAEVRLRMWDLLVETPPVPEGD-----EHGDVVNPCSFVGRVDEW 300
BLAST of mRNA_H-elongata_contig66988.14300.1 vs. uniprot
Match: A0A835YRC7_9STRA (Nucleoside phosphatase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC7_9STRA) HSP 1 Score: 174 bits (442), Expect = 3.120e-46 Identity = 106/236 (44.92%), Postives = 133/236 (56.36%), Query Frame = 1
Query: 4 MTVSGTTGGKIEPGLSSFAESPKDAAMHMLPLLSRVTYLVPKERHPRTRVFIKSTAGMRLLPEETQNAIYDEIYNGLLGHPEFPFALRRGDLGTIDGDKEAFYAVLSANYIKGRIDARLHPTGHESGAVGALDMAGGASTQIIFRHIKQSILSPVEESVEWDVREGDGVMGKGNDAASEECQNQAEAGEKRGWEPIGPVSEDD--------FWGASHLGYGVAEVRAKVWSYLVER 687
+ V+ T G + PGLS+FA P+DAA ++ PL VP E+H RT VFIK TAGMRL+ E +Q +YD +Y L FPF + R +L TIDG EA+YAVL+ NY++GR+DARL PT H +G +GALDM GGASTQIIF P + D G G+ A C ++A + P DD FW SHL YGVAEVRA+VW LV R
Sbjct: 263 LRVTATPGQSVTPGLSTFAGKPEDAAAYLSPLFQHAMAEVPPEQHSRTPVFIKGTAGMRLVEEPSQLQVYDALYEALAVDAVFPFHVHRRNLDTIDGASEAYYAVLATNYLEGRVDARLKPTAHPAGVLGALDM-GGASTQIIF--------PPAGP-------QSDPAAGGGS-ADGANCSGASQA--------LVPALSDDALQLTPAHFWARSHLSYGVAEVRARVWRRLVAR 473
BLAST of mRNA_H-elongata_contig66988.14300.1 vs. uniprot
Match: A0A6U4JED9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JED9_9STRA) HSP 1 Score: 151 bits (381), Expect = 1.420e-38 Identity = 94/233 (40.34%), Postives = 120/233 (51.50%), Query Frame = 1
Query: 4 MTVSGTTGGKIEPGLSSFAESPKDAAM--HMLPLLSRVTYLVPKERHPRTRVFIKSTAGMRLLPEETQNAIYDEIYNGLLGHPEFPFALRRGDLGTIDGDKEAFYAVLSANYIKGRIDARLHPTGHES--GAVGALDMAGGASTQIIFRHIKQSILSPVEESVEWDVREGDGVMGKGNDAASEECQNQAEAGEKRGWEPIGPVSEDDFWGASHLGYGVAEVRAKVWSYLVERH 690
+ VS G K +PGLS+F + + +++ L S L+P+ TRV+IK+TAGMRL EE Q YD+IY GL HP+F F L R D+GTI GD E YA LS NY+ GR+ L TG S G +GALDM GG+S QI+F E A + RG G +S D FWG S+LGYGV ++R K+WSYLV H
Sbjct: 69 VVVSSMQGPKAKPGLSTFVGEITETRVTTYLMSLFSEARKLIPQPFQKATRVYIKATAGMRLTCEENQQRTYDQIYEGLTAHPDFAFHLEREDVGTISGDSEGHYAALSVNYLAGRVAGDLSDTGGLSQLGPLGALDMGGGSS-QIVF-----------------------------------EPPQPKSAAKTRGEPEGGRLSVDRFWGHSYLGYGVDQIRIKLWSYLVTEH 265
BLAST of mRNA_H-elongata_contig66988.14300.1 vs. uniprot
Match: A0A7S1ZUU4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZUU4_TRICV) HSP 1 Score: 123 bits (308), Expect = 1.650e-28 Identity = 82/250 (32.80%), Postives = 126/250 (50.40%), Query Frame = 1
Query: 79 AMHMLPLLSRVTYLVPKERHPRTRVFIKSTAGMRLLPEETQNAIYDEIYNGLLGHPEFPFA-LRRGDLGTIDGDKEAFYAVLSANYIKGRIDARLHPTGHES----------------GAVGALDMAGGASTQIIFRHIKQSILSPVEESVEWDVREGDGVMGKGNDAASEECQNQAEAGEKRGWEPIGPVSEDDFWGASHLGYGVAEVRAKVWSYLVERHAESAGSSSASGSERNVVNPCSFVNRVDVW 777
A H+LPL ++P++ T V +TAGMRL+ E+ Q A+YD +Y GL F F+ +RR D+ T+ GD E FY ++ NY++G ID+R+H G+ES G +GALDM GGAS QI++ S S E ++ D+ + + C+N EK+ +SE DF+ S+L YGV + R ++W L++ + + S S ++NPC+F W
Sbjct: 52 AGHLLPLFEYAAEIIPQQYWNTTVVKYGATAGMRLIDEDEQEAVYDAVYEGLTTSNRFQFSSMRREDVATLGGDLEGFYGAVAVNYLRGVIDSRMHMKGNESHIFGQDKDDWHSLQYDGPLGALDM-GGASAQIVYLPEISSTCSS-EHALRGDMLDKVDFQ--------DSCKNVHLESEKQ-------LSESDFFSTSYLAYGVDQFRERLWDTLLDDEVRAREADPQSCSTGFILNPCAFRGYKTEW 284
BLAST of mRNA_H-elongata_contig66988.14300.1 vs. uniprot
Match: A0A1Z5K914_FISSO (Golgi apyrase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K914_FISSO) HSP 1 Score: 121 bits (303), Expect = 6.990e-28 Identity = 82/239 (34.31%), Postives = 130/239 (54.39%), Query Frame = 1
Query: 79 AMHMLPLLSRVTYLVPKERHPRTRVFIKSTAGMRLLPEETQNAIYDEIYNGLLGHPEFPFA-LRRGDLGTIDGDKEAFYAVLSANYIKGRIDARLHPTGHESGAVGALDMAGGASTQIIFRHIKQSILSPVEESVE--WDVREGDGVMGKGN---DAASEECQNQAEAGEKRGWEPIGPVSEDDFWGASHLGYGVAEVRAKVWSYLVERHAESAGSSSASGSERNVVNPCSFVNRVDVW 777
A H+LP +P++ H T V+ ++TAGMRLL E Q A+Y+ +Y GL+ P+F F+ L+R ++ T+ G+ E FY ++ANY++G ID L+ ++ VGALDM GG+STQI+F LSP + + W D +M +AA ++C ++A++ E ++ DF+ S+L YGV + R ++++ V H E+ S+ V NPCSF W
Sbjct: 89 AEHLLPTFVFAAEKIPQQYHASTPVYYQATAGMRLLDETEQEAVYNALYQGLMESPDFVFSNLQRENIATLSGEAEGFYGAVAANYLQGTIDVDLNFIATDAAPVGALDM-GGSSTQIVFL----PSLSPASSTPDNYWRSCVSDDLMTHEPILIEAALQDC-HKAQSNELPS-----RLNGPDFFATSYLSYGVDQFRERLYTLWVNEHMENIKSNECGSGV--VENPCSFPGYSIEW 314
BLAST of mRNA_H-elongata_contig66988.14300.1 vs. uniprot
Match: A0A7S2BI47_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI47_9STRA) HSP 1 Score: 115 bits (288), Expect = 7.600e-26 Identity = 86/284 (30.28%), Postives = 130/284 (45.77%), Query Frame = 1
Query: 10 VSGTTGGKIEPGLSSFAESPKDAAMHMLPLLSRVTYLVPKERHPRTRVFIKSTAGMRLLPEETQNAIYDEIY-------NG-----LLGHPEFPFALRRGD-LGTIDGDKEAFYAVLSANYIKGRIDARLHPT---------------GHESGAVGALDMAGGASTQIIFRHIKQSILSPVEESVEWDVREGDGVMGKGNDAASEECQNQAEAGEKRGWEPIGPVSEDDFWGASHLGYGVAEVRAKVWSYLVERHAESAGSSSASGSERNVVNPCSFVNRVDVW 777
+ G+ G K++PG+S F P D A ++ PL + L+P+ H +T++++K+TAG+RLLP E Q ++D ++ NG L G PF D LGTI GD+E F+A LS NY+ R+ L PT G E G VGA D E + E V + G + Q AGE + P+S DF+ S+L YGV + + ++W L+ + E + ++ ++ NPC FV R +VW
Sbjct: 64 IVGSKGLKVKPGVSKFNHKPNDIAEYLRPLFAHAASLIPEPYHHKTKIYLKATAGVRLLPIEEQTVMFDTLHAALESDKNGTYAEFLAGDILCPFVWESKDQLGTISGDEEGFFAALSVNYLGNRMGTDLKPTDNCVPDLYDGAEAEGGSEVGEVGA-DQGXXXXXXXXXAG---------EHAQEVSVLGAMDLGGSSTQIVYQPKDKQKGAGE------VTPLSMPDFFVHSYLSYGVDKAKERLWDTLLAKSTEDS-------TDDHISNPCDFVGRPEVW 324
BLAST of mRNA_H-elongata_contig66988.14300.1 vs. uniprot
Match: A0A7S2SVC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVC4_9STRA) HSP 1 Score: 114 bits (284), Expect = 9.010e-26 Identity = 87/286 (30.42%), Postives = 129/286 (45.10%), Query Frame = 1
Query: 7 TVSGTTGGKIEPGLSSFAESPKDAAMHMLPLLSRVTYLVPKERHPRTRVFIKSTAGMRLLPEETQNAIYDEIYNGLLGHPEFPFALRRGDLGTIDGDKEAFYAVLSANYIKGRIDARLH--------PTGHESGAV--------------------GALDMAGGASTQIIFRHIKQSILSPVEESVEW-DVREGDGVMGKGNDAASEECQNQAEAGEKRGWEPIGPVSEDDFWGASHLGYGVAEVRAKVWSYLVERHAESAGSSSASGSERNVVNPCSFVNRVDVW 777
TV G G K+ PG+SSF+ + PL+ LVP+E+ +T +F+++TAGMRLLPE Q ++ + L G PF + R LGTI G+ E +Y LS N++ RI L P G + +V GALD+ GG+STQI+F+ + W D G + AA C A + G + ++D + S L YGV VR ++W++L+E ++ S V NPC F R++ W
Sbjct: 60 TVHGNKGKKVTPGISSFSGKDVQFDEYFRPLIDHSKGLVPEEQWAQTPIFLRATAGMRLLPEAEQERLFAGAFASLSGESN-PFQVARSHLGTISGEDEGYYGALSVNFLAKRIGRNLRSLVAEEEMPQGGAATSVVDVSPDGTVAPLGPALAPVMGALDL-GGSSTQIVFQPLS------------WLDCTSAQGAQFQEESAAG--CPANATLHD-------GVLDDEDLFVHSFLSYGVDRVRERLWTHLIE---------ASPSSSSLVANPCGFHGRMETW 313
BLAST of mRNA_H-elongata_contig66988.14300.1 vs. uniprot
Match: A0A448ZIJ5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZIJ5_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.580e-25 Identity = 77/235 (32.77%), Postives = 119/235 (50.64%), Query Frame = 1
Query: 79 AMHMLPLLSRVTYLVPKERHPRTRVFIKSTAGMRLLPEETQNAIYDEIYNGLLGHPEFPF-ALRRGDLGTIDGDKEAFYAVLSANYIKGRIDARLH-----PTGHESGA-----VGALDMAGGASTQIIFRHIKQSILSPVEESVEWDVREGDGVMGKGNDAASEECQNQAEAGEKRGWEPIGPVSEDDFWGASHLGYGVAEVRAKVWSYLVERHAESAGSSSASGSERNVVNPC 750
A H+LPL ++P + H T V+ ++TAGMRLL E Q A+YD +Y GL+ F F ++R D+ T+ G+ EA+Y L+AN++KG ID LH G E+ +GALDM GG+STQI++ I + +E E + R+ + +N+ + +S++ F+ S+L YGV ++R ++W LV + AS V NPC
Sbjct: 126 AAHLLPLFDFAADIIPSQYHETTGVYYQATAGMRLLAESEQEAVYDAVYEGLMAEESFVFRGMQRKDIATLSGEMEAYYGALAANFLKGIIDTELHLVYAQNNGRETNELPHHPIGALDM-GGSSTQIVY------IANQDDEDDETE-RDPSNTCPIKQQPKLNDSENKN----------VCKLSDEHFFSTSYLSYGVDQIRKRLWDTLVLEYV-------ASDDAYMVPNPC 335
BLAST of mRNA_H-elongata_contig66988.14300.1 vs. uniprot
Match: A0A1E7FVG1_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVG1_9STRA) HSP 1 Score: 112 bits (279), Expect = 2.130e-24 Identity = 75/224 (33.48%), Postives = 114/224 (50.89%), Query Frame = 1
Query: 64 SPKDAAMHMLPLLSRVTYLVPKERHPRTRVFIKSTAGMRLLPEETQNAIYDEIYNGLLGHPEFPF-ALRRGDLGTIDGDKEAFYAVLSANYIKGRIDARL-----HPTGHESG----AVGALDMAGGASTQIIFRHIKQSILSPVEESVEWDVREGDGVMGKGNDAASEECQNQAEAGEKRGWEPIGPVSEDDFWGASHLGYGVAEVRAKVWSYLVERHAESAG 705
+P + A H+LPL ++P + + T V+ ++TAGMRLL E Q+A+YD +Y GL+ F F ++R D+ T+ G+ EA+Y LSANYI G ID L + G E+ VGALDM GG+STQI++ + + + + QN+ G E +S++ F+ S+L YGV + R ++W LVE + S G
Sbjct: 131 NPTEVAAHLLPLFEFAANIIPSQYYESTGVYYQATAGMRLLEESEQDAVYDALYQGLIDDQSFVFRGMQRKDISTLSGEMEAYYGALSANYILGLIDTELRVLPPNEEGEENQQHHQTVGALDM-GGSSTQIVYIAANNKDKIDIATTDSPTICPITPXXXXXXXXXXQPQQNEFNDGVI---ENTCQLSDEHFFSTSYLSYGVDQFRERLWGTLVEEYILSVG 350 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66988.14300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66988.14300.1 >prot_H-elongata_contig66988.14300.1 ID=prot_H-elongata_contig66988.14300.1|Name=mRNA_H-elongata_contig66988.14300.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=258bp MTVSGTTGGKIEPGLSSFAESPKDAAMHMLPLLSRVTYLVPKERHPRTRVback to top mRNA from alignment at H-elongata_contig66988:671..3183+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66988.14300.1 ID=mRNA_H-elongata_contig66988.14300.1|Name=mRNA_H-elongata_contig66988.14300.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2513bp|location=Sequence derived from alignment at H-elongata_contig66988:671..3183+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66988:671..3183+ >mRNA_H-elongata_contig66988.14300.1 ID=mRNA_H-elongata_contig66988.14300.1|Name=mRNA_H-elongata_contig66988.14300.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1548bp|location=Sequence derived from alignment at H-elongata_contig66988:671..3183+ (Himanthalia elongata Himel1 dioecious)back to top |