mRNA_H-elongata_contig6697.14296.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6697.14296.1
Unique NamemRNA_H-elongata_contig6697.14296.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig6697.14296.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.270e-11
Identity = 45/122 (36.89%), Postives = 60/122 (49.18%), Query Frame = 1 
Query:    4 VLNVHDRLGCDVYGLQETRRSGHSVFTQAGY-------------SKGQGGVGLAVRTF----VTRAARPPEFISNRLLKVTLELRGRVKAVTLFVAYAPTENQ------NASNQHAFWTSLD 300
            V+ +    GCDV GLQETRR G       GY              +G+ GVG+A++      V    R  E IS RL+KV L++ GR   VT  V YAPTE        + + + +FWT+LD
Sbjct:  180 VMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALD 300
[Close]
BLAST of mRNA_H-elongata_contig6697.14296.1 vs. uniprot
Match: A0A6H5KTM0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTM0_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.340e-10
Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 1 
Query:    4 VLNVHDRLGCDVYGLQETRRSGHSVFTQAGY------SKGQGGVGLAVR----TFVTRAARPPEFISNRLLKVTLELRGRVKAVTLFVAYAPTEN------QNASNQHAFWTSLD 300
            V+ +    GCDV GLQ TRR G       GY      ++G  GVG+A++      V    R  E IS RL+KV L++ GR   VTL V YAPTE        + + + +FWT+LD
Sbjct:   17 VMQICSATGCDVIGLQGTRREGQGSIAHDGYVIIWSGAQGVHGVGIAMKGAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTLVVGYAPTETIRTIAGGDVNAKDSFWTALD 130
[Close]
BLAST of mRNA_H-elongata_contig6697.14296.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.560e-10
Identity = 45/122 (36.89%), Postives = 59/122 (48.36%), Query Frame = 1 
Query:    4 VLNVHDRLGCDVYGLQETRRSGHSVFTQAGY-------------SKGQGGVGLAVRTF----VTRAARPPEFISNRLLKVTLELRGRVKAVTLFVAYAPTENQNASN------QHAFWTSLD 300
            V+ +    GCDV GLQETRR+G       GY              +G  GVG+A++      V    R  E IS RL+KV L++ GR   VT  V YAPTE    +       + +FWT+LD
Sbjct:  200 VMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALD 320
[Close]
BLAST of mRNA_H-elongata_contig6697.14296.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.060e-10
Identity = 44/122 (36.07%), Postives = 60/122 (49.18%), Query Frame = 1 
Query:    4 VLNVHDRLGCDVYGLQETRRSGHSVFTQAGY-------------SKGQGGVGLAVRTFVTRAA----RPPEFISNRLLKVTLELRGRVKAVTLFVAYAPTENQNASN------QHAFWTSLD 300
            V+ +    GCDV GLQETRR G       GY              +G  GVG+A++  +  +     R  E IS RL+KV L++ GR   VT  V YAPTE   ++       + +FWT+LD
Sbjct:   34 VMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALD 154
[Close]
BLAST of mRNA_H-elongata_contig6697.14296.1 vs. uniprot
Match: A0A6H5KTK0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.820e-10
Identity = 47/122 (38.52%), Postives = 59/122 (48.36%), Query Frame = 1 
Query:    4 VLNVHDRLGCDVYGLQETRRSGHSVFTQAGY-------------SKGQGGVGLAVRTF----VTRAARPPEFISNRLLKVTLELRGRVKAVTLFVAYAPTEN--QNASN----QHAFWTSLD 300
            V+ +    GCDV GLQETRR G       GY              +G  GVG+A++      V    R  E IS RL+KV L++ GR   VT  V YAPTE    NA      + +FWT+LD
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTNAGGDVHAKESFWTALD 123
[Close]
BLAST of mRNA_H-elongata_contig6697.14296.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.920e-10
Identity = 45/122 (36.89%), Postives = 60/122 (49.18%), Query Frame = 1 
Query:    4 VLNVHDRLGCDVYGLQETRRSGHSVFTQAGY-------------SKGQGGVGLAVRTF----VTRAARPPEFISNRLLKVTLELRGRVKAVTLFVAYAPTENQ------NASNQHAFWTSLD 300
            V+ +    GCDV GLQETRR+G       GY              +G  GVG+A++      V    R  E IS RL+KV L++ GR   VT  V YAPTE        + + + +FWT+LD
Sbjct:  111 VMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALD 231
[Close]
BLAST of mRNA_H-elongata_contig6697.14296.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.360e-10
Identity = 45/122 (36.89%), Postives = 59/122 (48.36%), Query Frame = 1 
Query:    4 VLNVHDRLGCDVYGLQETRRSGHSVFTQAGY-------------SKGQGGVGLAVRTF----VTRAARPPEFISNRLLKVTLELRGRVKAVTLFVAYAPTENQ------NASNQHAFWTSLD 300
            V+ +    GCDV GLQETRR G       GY              +G  GVG+A++      V    R  E IS RL+KV L++ GR   VT  V YAPTE        + + + +FWT+LD
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALD 123
[Close]
BLAST of mRNA_H-elongata_contig6697.14296.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.060e-10
Identity = 45/122 (36.89%), Postives = 59/122 (48.36%), Query Frame = 1 
Query:    4 VLNVHDRLGCDVYGLQETRRSGHSVFTQAGY-------------SKGQGGVGLAVRTF----VTRAARPPEFISNRLLKVTLELRGRVKAVTLFVAYAPTENQ------NASNQHAFWTSLD 300
            V+ +    GCDV GLQETRR G       GY              +G  GVG+A++      V    R  E IS RL+KV L++ GR   VT  V YAPTE        + + + +FWT+LD
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALD 123
[Close]
BLAST of mRNA_H-elongata_contig6697.14296.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 5.540e-10
Identity = 44/122 (36.07%), Postives = 59/122 (48.36%), Query Frame = 1 
Query:    4 VLNVHDRLGCDVYGLQETRRSGHSVFTQAGY-------------SKGQGGVGLAVRTF----VTRAARPPEFISNRLLKVTLELRGRVKAVTLFVAYAPTENQ------NASNQHAFWTSLD 300
            ++ +    GCDV GLQETRR G       GY              +G  GVG+A++      V    R  E IS RL+KV L++ GR   VT  V YAPTE        + + + +FWT+LD
Sbjct:   84 IMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALD 204
[Close]
BLAST of mRNA_H-elongata_contig6697.14296.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 5.600e-10
Identity = 45/122 (36.89%), Postives = 59/122 (48.36%), Query Frame = 1 
Query:    4 VLNVHDRLGCDVYGLQETRRSGHSVFTQAGY-------------SKGQGGVGLAVRTF----VTRAARPPEFISNRLLKVTLELRGRVKAVTLFVAYAPTENQ------NASNQHAFWTSLD 300
            V+ +    GCDV GLQETRR G       GY              +G  GVG+A++      V    R  E IS RL+KV L++ GR   VT  V YAPTE        + + + +FWT+LD
Sbjct:  682 VMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALD 802
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6697.14296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVN7_9PHAE6.270e-1136.89Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KTM0_9PHAE1.340e-1039.13Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3Q1_9PHAE1.560e-1036.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KZE6_9PHAE2.060e-1036.07Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KTK0_9PHAE2.820e-1038.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMB4_9PHAE2.920e-1036.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KBZ6_9PHAE3.360e-1036.89Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5L7A7_9PHAE4.060e-1036.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE5.540e-1036.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H7_9PHAE5.600e-1036.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6697contigH-elongata_contig6697:1241..1585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931059.2980163-CDS-H-elongata_contig6697:1240..14441622931059.2980163-CDS-H-elongata_contig6697:1240..1444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6697 1241..1444 -
1691679681.0466106-CDS-H-elongata_contig6697:1240..14441691679681.0466106-CDS-H-elongata_contig6697:1240..1444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6697 1241..1444 -
1622931059.3117118-CDS-H-elongata_contig6697:1486..15851622931059.3117118-CDS-H-elongata_contig6697:1486..1585Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6697 1487..1585 -
1691679681.0577946-CDS-H-elongata_contig6697:1486..15851691679681.0577946-CDS-H-elongata_contig6697:1486..1585Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6697 1487..1585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6697.14296.1prot_H-elongata_contig6697.14296.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6697 1241..1585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6697.14296.1

>prot_H-elongata_contig6697.14296.1 ID=prot_H-elongata_contig6697.14296.1|Name=mRNA_H-elongata_contig6697.14296.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
YVLNVHDRLGCDVYGLQETRRSGHSVFTQAGYSKGQGGVGLAVRTFVTRA
ARPPEFISNRLLKVTLELRGRVKAVTLFVAYAPTENQNASNQHAFWTSLD
R
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mRNA from alignment at H-elongata_contig6697:1241..1585-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6697.14296.1 ID=mRNA_H-elongata_contig6697.14296.1|Name=mRNA_H-elongata_contig6697.14296.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=345bp|location=Sequence derived from alignment at H-elongata_contig6697:1241..1585- (Himanthalia elongata Himel1 dioecious)
TATGTTTTGAATGTGCACGATCGACTGGGGTGCGACGTTTACGGTTTGCA
GGAGACCCGCCGCAGTGGACATTCAGTCTTCACTCAGGCTGGCTACTCGG
TGTACTAGAGCGGTGAGTGCGGTGGCGAAAACGGTGGAAAGAAAGGGCAA
GGTGGAGTAGGGTTAGCTGTTAGAACCTTCGTCACACGTGCTGCACGCCC
ACCTGAGTTTATCAGTAATCGCCTGCTAAAGGTTACACTTGAACTACGGG
GTCGAGTCAAGGCCGTTACGCTTTTTGTGGCGTATGCCCCCACTGAAAAT
CAGAACGCTAGTAATCAACATGCATTCTGGACGAGCTTGGATAGA
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Coding sequence (CDS) from alignment at H-elongata_contig6697:1241..1585-

>mRNA_H-elongata_contig6697.14296.1 ID=mRNA_H-elongata_contig6697.14296.1|Name=mRNA_H-elongata_contig6697.14296.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig6697:1241..1585- (Himanthalia elongata Himel1 dioecious)
TATGTTTTGAATGTGCACGATCGACTGGGGTGCGACGTTTACGGTTTGCA
GGAGACCCGCCGCAGTGGACATTCAGTCTTCACTCAGGCTGGCTACTCGT
ATGTTTTGAATGTGCACGATCGACTGGGGTGCGACGTTTACGGTTTGCAG
GAGACCCGCCGCAGTGGACATTCAGTCTTCACTCAGGCTGGCTACTCGAA
AGGGCAAGGTGGAGTAGGGTTAGCTGTTAGAACCTTCGTCACACGTGCTG
CACGCCCACCTGAGTTTATCAGTAATCGCCTGCTAAAGGTTACACTTGAA
CTACGGGGTCGAGTCAAGGCCGTTACGCTTTTTGTGGCGTATGCCCCCAC
TGAAAATCAGAACGCTAGTAATCAACATGCATTCTGGACGAGCTTGGATA
GAAAAGGGCAAGGTGGAGTAGGGTTAGCTGTTAGAACCTTCGTCACACGT
GCTGCACGCCCACCTGAGTTTATCAGTAATCGCCTGCTAAAGGTTACACT
TGAACTACGGGGTCGAGTCAAGGCCGTTACGCTTTTTGTGGCGTATGCCC
CCACTGAAAATCAGAACGCTAGTAATCAACATGCATTCTGGACGAGCTTG
GATAGA
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