mRNA_H-elongata_contig66964.14294.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66964.14294.1
Unique NamemRNA_H-elongata_contig66964.14294.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66964.14294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66964contigH-elongata_contig66964:579..1409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_005420.1
Exons3
Model size591
Cds size591
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66964.14294.1prot_H-elongata_contig66964.14294.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66964 579..1409 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931059.155308-CDS-H-elongata_contig66964:578..7271622931059.155308-CDS-H-elongata_contig66964:578..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66964 579..727 -
1691679681.0026166-CDS-H-elongata_contig66964:578..7271691679681.0026166-CDS-H-elongata_contig66964:578..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66964 579..727 -
1622931059.1761672-CDS-H-elongata_contig66964:895..9841622931059.1761672-CDS-H-elongata_contig66964:895..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66964 896..984 -
1691679681.0128279-CDS-H-elongata_contig66964:895..9841691679681.0128279-CDS-H-elongata_contig66964:895..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66964 896..984 -
1622931059.200424-CDS-H-elongata_contig66964:1056..14091622931059.200424-CDS-H-elongata_contig66964:1056..1409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66964 1057..1409 -
1691679681.0226555-CDS-H-elongata_contig66964:1056..14091691679681.0226555-CDS-H-elongata_contig66964:1056..1409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66964 1057..1409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66964.14294.1

>prot_H-elongata_contig66964.14294.1 ID=prot_H-elongata_contig66964.14294.1|Name=mRNA_H-elongata_contig66964.14294.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
GVLLFRIDGKVYQAEHTLIRRIAYPKGGSGIGEYEDPQTDSFQHGHGGRS
STSFLPEEEKLADVGDLPPNGVGEASARPGRCPPGAHARASQTDDVCNSG
GAGKSDCGSGLNTGGRESKLGASDEGFGVTCAVDGGRGSQGGACGGPGCC
GDCDGAEAENPKVASAGGEGGVFGDGTHAGDTPYCGLLFPGVFLKFW
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mRNA from alignment at H-elongata_contig66964:579..1409-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66964.14294.1 ID=mRNA_H-elongata_contig66964.14294.1|Name=mRNA_H-elongata_contig66964.14294.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=831bp|location=Sequence derived from alignment at H-elongata_contig66964:579..1409- (Himanthalia elongata Himel1 dioecious)
GGCGTGCTCTTGTTTCGGATCGACGGCAAAGTCTACCAAGCGGAGCACAC
CCTTATTCGGAGGATCGCGTACCCAAAGGGTGGCAGTGGCATCGGAGAGT
ACGAGGACCCTCAAACCGATAGCTTCCAGCACGGTCATGGAGGGCGCTCC
AGCACCTCCTTCCTCCCTGAAGAAGAGAAGTTGGCGGACGTTGGCGACCT
GCCACCGAACGGCGTGGGAGAGGCTTCGGCAAGACCCGGAAGGTGTCCGC
CCGGCGCTCACGCTCGCGCCTCTCAAACCGATGACGTCTGCAACAGCGGC
GGCGCCGGCAAGAGTGACTGTGGGTCGGGTCTCAACACCGGGGGAAGGGA
ATCGTCATCGACCCTTGCGGCGGGGGGCGGAGGGATAACGGGCGCCACAG
TAGATGTGGGCGCAAGAGTAAAGAGGAAGTTGGGTGCGTCGGATGAAGGA
TTTGGAGTGACGTGCGCCGTGGATGGCGGGCGGGGGTCGCAAGGAGGCGC
TTGCGGTGGCCCTGGTGGCGACGCGGGGCCAGGGCGCGGATGCCCCCAGC
AGCAGCAGCAGAAACAGCGAGACGTTTCGTCTGCGGAGAGCTGTCATTGT
GCTCGGGGAGGCGACCAGCGGCGAGAGGTGTGTTGCCGCTGCTGCCGAGC
GGCCGCTGTCGAAGGGAGAATAAGAATAAGAGGCTGCTGTGGCGACTGCG
ATGGAGCAGAAGCCGAGAATCCAAAAGTGGCCTCGGCAGGCGGCGAGGGA
GGCGTGTTTGGTGATGGGACTCACGCCGGAGATACACCCTACTGTGGTCT
TTTGTTTCCAGGGGTGTTTCTCAAATTCTGG
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Coding sequence (CDS) from alignment at H-elongata_contig66964:579..1409-

>mRNA_H-elongata_contig66964.14294.1 ID=mRNA_H-elongata_contig66964.14294.1|Name=mRNA_H-elongata_contig66964.14294.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig66964:579..1409- (Himanthalia elongata Himel1 dioecious)
GGCGTGCTCTTGTTTCGGATCGACGGCAAAGTCTACCAAGCGGAGCACAC
CCTTATTCGGAGGATCGCGTACCCAAAGGGTGGCAGTGGCATCGGAGAGT
ACGAGGACCCTCAAACCGATAGCTTCCAGCACGGTCATGGAGGGCGCTCC
AGCACCTCCTTCCTCCCTGAAGAAGAGAAGTTGGCGGACGTTGGCGACCT
GCCACCGAACGGCGTGGGAGAGGCTTCGGCAAGACCCGGAAGGTGTCCGC
CCGGCGCTCACGCTCGCGCCTCTCAAACCGATGACGTCTGCAACAGCGGC
GGCGCCGGCAAGAGTGACTGTGGGTCGGGTCTCAACACCGGGGGAAGGGA
ATCGGCGTGCTCTTGTTTCGGATCGACGGCAAAGTCTACCAAGCGGAGCA
CACCCTTATTCGGAGGATCGCGTACCCAAAGGGTGGCAGTGGCATCGGAG
AGTACGAGGACCCTCAAACCGATAGCTTCCAGCACGGTCATGGAGGGCGC
TCCAGCACCTCCTTCCTCCCTGAAGAAGAGAAGTTGGCGGACGTTGGCGA
CCTGCCACCGAACGGCGTGGGAGAGGCTTCGGCAAGACCCGGAAGGTGTC
CGCCCGGCGCTCACGCTCGCGCCTCTCAAACCGATGACGTCTGCAACAGC
GGCGGCGCCGGCAAGAGTGACTGTGGGTCGGGTCTCAACACCGGGGGAAG
GGAATCGAAGTTGGGTGCGTCGGATGAAGGATTTGGAGTGACGTGCGCCG
TGGATGGCGGGCGGGGGTCGCAAGGAGGCGCTTGCGGTGGCCCTGGAAGT
TGGGTGCGTCGGATGAAGGATTTGGAGTGACGTGCGCCGTGGATGGCGGG
CGGGGGTCGCAAGGAGGCGCTTGCGGTGGCCCTGGCTGCTGTGGCGACTG
CGATGGAGCAGAAGCCGAGAATCCAAAAGTGGCCTCGGCAGGCGGCGAGG
GAGGCGTGTTTGGTGATGGGACTCACGCCGGAGATACACCCTACTGTGGT
CTTTTGTTTCCAGGGGTGTTTCTCAAATTCTGGGCTGCTGTGGCGACTGC
GATGGAGCAGAAGCCGAGAATCCAAAAGTGGCCTCGGCAGGCGGCGAGGG
AGGCGTGTTTGGTGATGGGACTCACGCCGGAGATACACCCTACTGTGGTC
TTTTGTTTCCAGGGGTGTTTCTCAAATTCTGG
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