mRNA_H-elongata_contig66955.14293.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66955.14293.1
Unique NamemRNA_H-elongata_contig66955.14293.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66955.14293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66955contigH-elongata_contig66955:2360..2976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionReplication factor A protein 3
Ec32 orthologEc-14_000330.1
Exons2
Model size591
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66955.14293.1prot_H-elongata_contig66955.14293.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66955 2581..2915 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931059.013267-UTR-H-elongata_contig66955:2359..25801622931059.013267-UTR-H-elongata_contig66955:2359..2580Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66955 2360..2580 -
1691679680.961004-UTR-H-elongata_contig66955:2359..25801691679680.961004-UTR-H-elongata_contig66955:2359..2580Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66955 2360..2580 -
1622931059.105675-UTR-H-elongata_contig66955:2915..29761622931059.105675-UTR-H-elongata_contig66955:2915..2976Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66955 2916..2976 -
1691679680.9945161-UTR-H-elongata_contig66955:2915..29761691679680.9945161-UTR-H-elongata_contig66955:2915..2976Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66955 2916..2976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931059.033074-CDS-H-elongata_contig66955:2580..27121622931059.033074-CDS-H-elongata_contig66955:2580..2712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66955 2581..2712 -
1691679680.9725335-CDS-H-elongata_contig66955:2580..27121691679680.9725335-CDS-H-elongata_contig66955:2580..2712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66955 2581..2712 -
1622931059.053153-CDS-H-elongata_contig66955:2738..29151622931059.053153-CDS-H-elongata_contig66955:2738..2915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66955 2739..2915 -
1691679680.9838607-CDS-H-elongata_contig66955:2738..29151691679680.9838607-CDS-H-elongata_contig66955:2738..2915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66955 2739..2915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66955.14293.1

>prot_H-elongata_contig66955.14293.1 ID=prot_H-elongata_contig66955.14293.1|Name=mRNA_H-elongata_contig66955.14293.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MRVCFLSVITYSKCNMFHLHVFTIRDQRCFPLSAECYSHPPHLLVPLVLH
EYSRFFRRLFSGRTVCVVGEVISHQHGAPEAELKMSVNIQDVKCSLLEDD
KT*
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mRNA from alignment at H-elongata_contig66955:2360..2976-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66955.14293.1 ID=mRNA_H-elongata_contig66955.14293.1|Name=mRNA_H-elongata_contig66955.14293.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=617bp|location=Sequence derived from alignment at H-elongata_contig66955:2360..2976- (Himanthalia elongata Himel1 dioecious)
GCATATTGCGGCGCTATCAGAAGCGTGCTAGCGTGTCAGGTTGCCTAATG
AGTCAAGGCGGATGCGGGTTTGTTTCCTGAGTGTTATTACCTATAGTAAA
TGTAATATGTTTCACCTACATGTTTTCACGATCAGAGATCAGAGGTGTTT
TCCCCTCTCCGCTGAGTGCTATTCCCATCCACCCCACTTACTCGTACCAC
TCGTACTGCATGAATACAGCCGCTTTTTCAGACGCCTCGTGTGAACGGGG
CCATGCTTCAGCAGTTCTCTGGCCGAACAGTGTGTGTTGTGGGCGAAGTC
ATCTCGCATCAGCATGGCGCCCCCGAGGCGGAGCTGAAGATGTCGGTAAA
TATTCAAGATGTGAAATGCTCGTTACTTGAGGATGATAAGACATAAAGAC
CCCACATGAGAAAAGAGTATAATATACTGTATTTTAGAGTAGTAGACCAT
ACGCCCATATGGTAAGTGCATGATGGATGATGGACGATGAATGATGGATG
ATGAATTTTACATGTCCTACTAATAGTGCAGACGTGCCAATCCGAGTGCC
GATCGGGGTACGAGTCGAGTCAGAGCAAAGACCACGGTAGAGCTTTTGTC
ATTGTTTTGCCACCTCC
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Coding sequence (CDS) from alignment at H-elongata_contig66955:2360..2976-

>mRNA_H-elongata_contig66955.14293.1 ID=mRNA_H-elongata_contig66955.14293.1|Name=mRNA_H-elongata_contig66955.14293.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig66955:2360..2976- (Himanthalia elongata Himel1 dioecious)
ATGCGGGTTTGTTTCCTGAGTGTTATTACCTATAGTAAATGTAATATGTT
TCACCTACATGTTTTCACGATCAGAGATCAGAGGTGTTTTCCCCTCTCCG
CTGAGTGCTATTCCCATCCACCCCACTTACTCGTACCACTCGTACTGCAT
GAATACAGCCGCTTTTTCAGACGCCTCATGCGGGTTTGTTTCCTGAGTGT
TATTACCTATAGTAAATGTAATATGTTTCACCTACATGTTTTCACGATCA
GAGATCAGAGGTGTTTTCCCCTCTCCGCTGAGTGCTATTCCCATCCACCC
CACTTACTCGTACCACTCGTACTGCATGAATACAGCCGCTTTTTCAGACG
CCTCTTCTCTGGCCGAACAGTGTGTGTTGTGGGCGAAGTCATCTCGCATC
AGCATGGCGCCCCCGAGGCGGAGCTGAAGATGTCGGTAAATATTCAAGAT
GTGAAATGCTCGTTACTTGAGGATGATAAGACATAATTCTCTGGCCGAAC
AGTGTGTGTTGTGGGCGAAGTCATCTCGCATCAGCATGGCGCCCCCGAGG
CGGAGCTGAAGATGTCGGTAAATATTCAAGATGTGAAATGCTCGTTACTT
GAGGATGATAAGACATAA
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