mRNA_H-elongata_contig66940.14292.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66940.14292.1
Unique NamemRNA_H-elongata_contig66940.14292.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66940.14292.1 vs. uniprot
Match: D7FU11_ECTSI (BRO1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU11_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 5.900e-38
Identity = 78/125 (62.40%), Postives = 99/125 (79.20%), Query Frame = 3 
Query:  327 ACKHMEERRDAVSVGLPPLSGPLRDIYHDVQELRGQFRGLRDSYIKDNQSIYYESIPSSDLLDPLPEAVVMMKLIPSEEKSPLPQILSFRTPGSAAKEEEEEGANGGD-QKTDEQIARELFEKLN 698
            ACK++EERRDAVSVGLPPL+GPLR+I HD++ L+G+FR LRD+Y KDN SIYYE +P  D+LDPLP+ VVMMK +PSEE++P  + LSFR  GSA  EE ++ +   D  KTDE++AR L EKLN
Sbjct:  276 ACKYVEERRDAVSVGLPPLAGPLRNISHDLKTLQGEFRQLRDAYAKDNNSIYYEPVPDLDMLDPLPQPVVMMKPLPSEEEAPPTETLSFRATGSAPGEEPKDASGLPDADKTDEELARALHEKLN 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66940.14292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU11_ECTSI5.900e-3862.40BRO1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66940contigH-elongata_contig66940:1115..3346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue1.2e-32
Seed eggNOG ortholog2880.D7FU11
EggNOG free text desc.BRO1-like domain
EggNOG OGs2E3RK@1,2SAS3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1701
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66940.14292.1prot_H-elongata_contig66940.14292.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66940 2112..3008 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931058.904969-UTR-H-elongata_contig66940:1114..21111622931058.904969-UTR-H-elongata_contig66940:1114..2111Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66940 1115..2111 -
1691679680.9202788-UTR-H-elongata_contig66940:1114..21111691679680.9202788-UTR-H-elongata_contig66940:1114..2111Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66940 1115..2111 -
1622931058.9669218-UTR-H-elongata_contig66940:3008..33461622931058.9669218-UTR-H-elongata_contig66940:3008..3346Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66940 3009..3346 -
1691679680.9501762-UTR-H-elongata_contig66940:3008..33461691679680.9501762-UTR-H-elongata_contig66940:3008..3346Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66940 3009..3346 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931058.9294295-CDS-H-elongata_contig66940:2111..23511622931058.9294295-CDS-H-elongata_contig66940:2111..2351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66940 2112..2351 -
1691679680.9323995-CDS-H-elongata_contig66940:2111..23511691679680.9323995-CDS-H-elongata_contig66940:2111..2351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66940 2112..2351 -
1622931058.9506922-CDS-H-elongata_contig66940:2882..30081622931058.9506922-CDS-H-elongata_contig66940:2882..3008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66940 2883..3008 -
1691679680.9414458-CDS-H-elongata_contig66940:2882..30081691679680.9414458-CDS-H-elongata_contig66940:2882..3008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66940 2883..3008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66940.14292.1

>prot_H-elongata_contig66940.14292.1 ID=prot_H-elongata_contig66940.14292.1|Name=mRNA_H-elongata_contig66940.14292.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MEERRDAVSVGLPPLSGPLRDIYHDVQELRGQFRGLRDSYIKDNQSIYYE
SIPSSDLLDPLPEAVVMMKLIPSEEKSPLPQILSFRTPGSAAKEEEEEGA
NGGDQKTDEQIARELFEKLNM*
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mRNA from alignment at H-elongata_contig66940:1115..3346-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66940.14292.1 ID=mRNA_H-elongata_contig66940.14292.1|Name=mRNA_H-elongata_contig66940.14292.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2232bp|location=Sequence derived from alignment at H-elongata_contig66940:1115..3346- (Himanthalia elongata Himel1 dioecious)
TGTGGATGTTCGGAGAGTTAGAATGAGCCTAGAGTCTTTTAAATAAAAAT
AAAATAAAGTAAGATAAAGATCTAAATATCTACCTATATATCTATTTATT
TATATATATATATGTAACGGTGGCTGTCTGTCGATTTCCGGACTACAGAA
CCTTATATTTTTTTAATATTTTTTTTGCCTGTCCCCACGATTTCAAGAGG
GGGTAAAGGGCTGTCGAAATCAGGCGCTGCAAATACTTAGCCGAAGAGAC
CAAGTGTTTTCAGCGTAAGGCATACATGTTCCAAAACTAAAAACGAGTGT
TTTTCGTTGTGTGATCAAGTGGTCAGGCTTGCAAGCACATGGAGGAGAGA
CGAGACGCGGTTAGCGTCGGCCTCCCACCGTTGTCGGGTCCATTGCGAGA
CATCTACCACGATGTCCAGGAGCTGCGTGGGCAGTTTCGAGGACTCCGCG
ACAGCTATATCAAGGTGTACCACTCAATTCAATATAATCGACTGCTGCAA
ACTTCGTTTGCTGGTCTAAAGTAAATTACTGGGGGGCGTAGTTCACGACG
ACGATGGATGGCGCGAGAAGGGTCAGCTCTGACTCTCTCCCTGACCTTGG
TCGTCATCGGTGAAAGAGAAATGGCAACCGGTCGAAGCGGGGTTTTGATG
TCATCGGGGTAGCTCGCTAACGGCTTGTCTTGCCTTCTCTCCCAAGCGAC
CGAGGTGTGGCCTGCCTTCTCGATGACCGAACGTTGCTTTTCACTGGAAG
ACGTCGCTTAATATCAGTTGAGATGCAAGAGCGACTATTAGTTGAGGGTG
TTTCTGGTGGATAGGGTGGTGTGGCCCAATACATCTTCGTTGTGTCATGT
ATTGCGTTTTGCTTTGTGGTATTTAGTGTGACGTTTCTAACGAACCGAAG
GCCACCCGCTTCCCCCATACGACGCCAGTGTACGACAGTTGTCACGCTAA
TCTCCTGGACCCTCTCGCGCATCGTCCAATCCACCGATCCCCCAGGACAA
CCAGTCTATCTACTACGAGTCGATACCGAGCAGCGATCTGCTGGATCCTC
TGCCGGAAGCAGTTGTGATGATGAAGCTGATCCCATCGGAAGAGAAGTCG
CCCCTTCCCCAAATTCTCTCGTTTCGAACACCTGGTAGCGCCGCGAAGGA
GGAGGAAGAGGAAGGGGCCAACGGAGGCGACCAAAAGACGGACGAACAGA
TCGCCCGCGAGCTCTTCGAGAAGCTGAACATGTGAAGAATGCGTGTGTCG
TTTCTCTTCCGTTGTTCAGGATTGGTGGGGGCGACAGGGATCCGGTTAAA
GGGTCAGATAACCTACGAGGGATCCTCCCCTCCCCGACCATAGCTGGAGT
TTGGTTCAGGTCGATAAGACCTGGGGCCTGGATGTTTCGCGAGTGTTTCT
CCAGATAGACCAGGCTTGTTTTTTCTTGTTATTGACACATCAGTTGCAGC
GAGTACACGGCCTTCACGCCTCTTTGTCTATACACGCGTGTAAACGCCTC
TTTAATGAGGCGACTCGACTCTTCGCTTTTGTGTGTGTGAGAGTTTTCTG
TAACATTTCGAAGAAATTGACATTGATTTGATTGAATTCGCACATAATGG
GGCGTTTTAAACGTGTTTTTTTTTCGGATTTTGAAATATCAAACATTTCG
ACATTGGTAACTAGGCGTTTATCGAAATTTTGCTCCAAAACCTTTGAAGC
AATTCACAGGCCAAAAGTGCGAACGAGTTGCTTCAAAATTTTTGCTTTGT
TTTCAAATATTTTGAAATTTCGCGACATTCGAACAGCGGCTCGCAGAGGG
CGCAGTGCTGCCGGGCGTGAGTGATCTACATCGCAGCAAATCACTTGGGT
GTGTAGTATCTTCCTGGTTGAAAATAGAAGCCTAGTTAATCGTGGAGCTT
ATAACAATTGTCGATAGATACCATGCACACCCTACATACGTCCGGGGTCT
GGCGTCTTATGCAATCTACTTCACGAATTTCTTAAAAGTTGGGCCTTGAG
TTGCACTTGATGTGCTGTTGCATATGCATACATATCGAGATGACCGGTCG
CAAACTATAATCGGCATTGTTTGGGTGATTATCGGCATTGTTAGGGTGAT
AATCGGCATTGTTTGGGTGTTTTAGACAAGAGAGTAAAAGTACGTCGTCA
CTCAAATGCTAGATATGTTTTTTTTAAAGACCCCGGCTCGAAAAAAATCG
CATGATGAACCCCACTCAAAACGTACGCCCGG
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Coding sequence (CDS) from alignment at H-elongata_contig66940:1115..3346-

>mRNA_H-elongata_contig66940.14292.1 ID=mRNA_H-elongata_contig66940.14292.1|Name=mRNA_H-elongata_contig66940.14292.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig66940:1115..3346- (Himanthalia elongata Himel1 dioecious)
ATGGAGGAGAGACGAGACGCGGTTAGCGTCGGCCTCCCACCGTTGTCGGG
TCCATTGCGAGACATCTACCACGATGTCCAGGAGCTGCGTGGGCAGTTTC
GAGGACTCCGCGACAGCTATATCAAGATGGAGGAGAGACGAGACGCGGTT
AGCGTCGGCCTCCCACCGTTGTCGGGTCCATTGCGAGACATCTACCACGA
TGTCCAGGAGCTGCGTGGGCAGTTTCGAGGACTCCGCGACAGCTATATCA
AGGACAACCAGTCTATCTACTACGAGTCGATACCGAGCAGCGATCTGCTG
GATCCTCTGCCGGAAGCAGTTGTGATGATGAAGCTGATCCCATCGGAAGA
GAAGTCGCCCCTTCCCCAAATTCTCTCGTTTCGAACACCTGGTAGCGCCG
CGAAGGAGGAGGAAGAGGAAGGGGCCAACGGAGGCGACCAAAAGACGGAC
GAACAGATCGCCCGCGAGCTCTTCGAGAAGCTGAACATGTGAGACAACCA
GTCTATCTACTACGAGTCGATACCGAGCAGCGATCTGCTGGATCCTCTGC
CGGAAGCAGTTGTGATGATGAAGCTGATCCCATCGGAAGAGAAGTCGCCC
CTTCCCCAAATTCTCTCGTTTCGAACACCTGGTAGCGCCGCGAAGGAGGA
GGAAGAGGAAGGGGCCAACGGAGGCGACCAAAAGACGGACGAACAGATCG
CCCGCGAGCTCTTCGAGAAGCTGAACATGTGA
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