mRNA_H-elongata_contig66853.14287.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66853.14287.1
Unique NamemRNA_H-elongata_contig66853.14287.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66853.14287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66853contigH-elongata_contig66853:2162..2861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931058.3996558-CDS-H-elongata_contig66853:2161..22271622931058.3996558-CDS-H-elongata_contig66853:2161..2227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66853 2162..2227 -
1691679680.7608335-CDS-H-elongata_contig66853:2161..22271691679680.7608335-CDS-H-elongata_contig66853:2161..2227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66853 2162..2227 -
1622931058.4162905-CDS-H-elongata_contig66853:2642..28611622931058.4162905-CDS-H-elongata_contig66853:2642..2861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66853 2643..2861 -
1691679680.7747266-CDS-H-elongata_contig66853:2642..28611691679680.7747266-CDS-H-elongata_contig66853:2642..2861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66853 2643..2861 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66853.14287.1prot_H-elongata_contig66853.14287.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66853 2162..2861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66853.14287.1

>prot_H-elongata_contig66853.14287.1 ID=prot_H-elongata_contig66853.14287.1|Name=mRNA_H-elongata_contig66853.14287.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
AAAAAAAVAAAAAVAEAAASAGFGCGDVAAQGWTSTGVPIGLESGGSGGE
DDTDGGGGVTTDPAHSSSESDSEDLSPFSTLDGRSGQPSTPPLSP
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mRNA from alignment at H-elongata_contig66853:2162..2861-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66853.14287.1 ID=mRNA_H-elongata_contig66853.14287.1|Name=mRNA_H-elongata_contig66853.14287.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=700bp|location=Sequence derived from alignment at H-elongata_contig66853:2162..2861- (Himanthalia elongata Himel1 dioecious)
GCTGCTGCTGCTGCTGCCGCCGTGGCGGCCGCTGCAGCTGTTGCCGAGGC
GGCGGCTTCTGCTGGTTTTGGTTGTGGTGATGTGGCTGCACAGGGGTGGA
CTTCGACCGGAGTTCCTATTGGCCTGGAAAGCGGCGGGAGCGGAGGCGAA
GACGACACGGACGGTGGTGGGGGCGTAACCACAGACCCAGCGCACTCGTC
CTCGGAAAGCGACTCGGAGGTATTTTCGAGGGGGGAAGTGGGTGGGGGCG
GAAGGCTGGGGGGGGGGGGTGGGAGGCGGGGATTCAAGCAAATAAGAGTT
ATTTCTATAATATACTTGTTGCTTGTGTTGTGATGCCTCTCCATGATGGG
ATGGAAATATTTCTAGTCACTTGAGCGTACGGTGTAGGAATCGTTCAGCA
AGCGGCCTATGGAGCAATACCAAGCCTGATATGTGTCCTCCTTTCGTGCC
TCTCCATCCCCTATTTCCCTTTCCTTCCCCGCCCATGCTTGCTATATTGG
AAACCCTTCCAGCATGTACGGGTCGGGGAATTAGTTTTGTTGGTAATTTT
TCTTACCCTTTTCGTGCTCTCACCTCCCCCCCCCCCCGCCCCCTCCCTCC
TTCCTGATACACCTCAAAATAATTCTCTTCGCAGGACCTCTCACCGTTCT
CGACCCTCGACGGCCGATCCGGACAGCCAAGCACACCCCCCTTGAGCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig66853:2162..2861-

>mRNA_H-elongata_contig66853.14287.1 ID=mRNA_H-elongata_contig66853.14287.1|Name=mRNA_H-elongata_contig66853.14287.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig66853:2162..2861- (Himanthalia elongata Himel1 dioecious)
GCTGCTGCTGCTGCTGCCGCCGTGGCGGCCGCTGCAGCTGTTGCCGAGGC
GGCGGCTTCTGCTGGTTTTGGTTGTGGTGATGTGGCTGCACAGGGGTGGA
CTTCGACCGGAGTTCCTATTGGCCTGGAAAGCGGCGGGAGCGGAGGCGAA
GACGACACGGACGGTGGTGGGGGCGTAACCACAGACCCAGCGCACTCGTC
CTCGGAAAGCGACTCGGAGGCTGCTGCTGCTGCTGCCGCCGTGGCGGCCG
CTGCAGCTGTTGCCGAGGCGGCGGCTTCTGCTGGTTTTGGTTGTGGTGAT
GTGGCTGCACAGGGGTGGACTTCGACCGGAGTTCCTATTGGCCTGGAAAG
CGGCGGGAGCGGAGGCGAAGACGACACGGACGGTGGTGGGGGCGTAACCA
CAGACCCAGCGCACTCGTCCTCGGAAAGCGACTCGGAGGACCTCTCACCG
TTCTCGACCCTCGACGGCCGATCCGGACAGCCAAGCACACCCCCCTTGAG
CCCCGACCTCTCACCGTTCTCGACCCTCGACGGCCGATCCGGACAGCCAA
GCACACCCCCCTTGAGCCCC
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