mRNA_H-elongata_contig66852.14284.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66852.14284.1
Unique NamemRNA_H-elongata_contig66852.14284.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66852.14284.1 vs. uniprot
Match: A0A6H5J7N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N1_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.040e-32
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 1 
Query:  880 GGLRSGLSRKFVRSLMRHLNMRADSRQREELRSMVETLKCVANRPGVDMKQELKREAVSLLGPELAREAFEASLTETRNDFYRQRS 1137
            GG+RSGLSRKFVRSLMRHLNMRADSRQREELRSMVETLK  ++  GVDMKQE+KREAVSLLGPELAREAFEASL+ETRN+F+RQRS
Sbjct:  308 GGMRSGLSRKFVRSLMRHLNMRADSRQREELRSMVETLKHRSSVRGVDMKQEIKREAVSLLGPELAREAFEASLSETRNEFHRQRS 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66852.14284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7N1_9PHAE1.040e-3287.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66852contigH-elongata_contig66852:851..2042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1194
Cds size1191
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931058.264228-CDS-H-elongata_contig66852:850..20411622931058.264228-CDS-H-elongata_contig66852:850..2041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66852 851..2041 +
1691679680.7078667-CDS-H-elongata_contig66852:850..20411691679680.7078667-CDS-H-elongata_contig66852:850..2041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66852 851..2041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66852.14284.1prot_H-elongata_contig66852.14284.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66852 851..2041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66852.14284.1

>prot_H-elongata_contig66852.14284.1 ID=prot_H-elongata_contig66852.14284.1|Name=mRNA_H-elongata_contig66852.14284.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=397bp
RGLSDIYSHYHSHVLLQYECCGDSVGTGRTDPMATQVSLHSGVGALGHGL
AAVMDPPLSPTARRQILFSQQQPEPAAVSIRHDAAVAPTAVRAVASVYTT
RSGGGYHRVTDQLSAFATYPEREAHPLDEREREEDIMPAATTAAPGAAPG
GVNGGVRTVPFADVEGDRNTAVAVNSTGGVSAGAVTNVMPEDVDMNFLDD
GVISMATDDVDLASVLPVTAAANRGLESNGGRRRSSVGSAVGVETGSSPY
QAPTFRRGSVSGGRIDPQNGVISSSTSSRRRRSTLGGGGGGGTGGLRSGL
SRKFVRSLMRHLNMRADSRQREELRSMVETLKCVANRPGVDMKQELKREA
VSLLGPELAREAFEASLTETRNDFYRQRSVAAAAAAEAAASTEALGG
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mRNA from alignment at H-elongata_contig66852:851..2042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66852.14284.1 ID=mRNA_H-elongata_contig66852.14284.1|Name=mRNA_H-elongata_contig66852.14284.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1192bp|location=Sequence derived from alignment at H-elongata_contig66852:851..2042+ (Himanthalia elongata Himel1 dioecious)
AGGGGGTTGTCCGATATCTACAGTCACTATCATAGCCACGTGTTACTGCA
ATACGAGTGCTGTGGGGATTCGGTTGGGACGGGTCGAACCGATCCCATGG
CTACTCAAGTCTCGCTTCACTCAGGGGTCGGGGCTCTTGGTCACGGACTC
GCGGCAGTGATGGACCCCCCCTTGTCACCGACGGCCAGGCGACAGATACT
CTTCTCTCAACAGCAACCGGAACCCGCTGCAGTGTCTATACGCCACGATG
CGGCCGTCGCGCCCACGGCCGTGAGAGCGGTGGCGTCGGTTTATACAACC
AGATCTGGTGGAGGGTATCACAGAGTAACGGACCAGCTTTCCGCATTCGC
GACGTACCCAGAGAGAGAGGCACATCCCCTCGACGAGCGAGAACGGGAGG
AAGATATAATGCCTGCCGCAACCACCGCTGCTCCGGGAGCCGCCCCCGGT
GGCGTCAATGGCGGGGTCAGAACTGTACCATTCGCGGACGTGGAGGGTGA
CCGAAACACTGCTGTTGCCGTCAACTCTACAGGTGGGGTGAGCGCCGGCG
CTGTGACCAACGTCATGCCCGAAGACGTGGACATGAATTTTTTGGACGAT
GGCGTGATCTCGATGGCGACGGACGACGTCGACCTCGCATCTGTGCTGCC
GGTGACGGCTGCAGCCAACCGGGGTCTGGAAAGTAACGGCGGCCGACGGA
GGAGCAGTGTCGGCAGCGCCGTCGGTGTGGAGACTGGATCATCACCCTAT
CAAGCACCAACTTTCCGCCGGGGTAGCGTCAGCGGCGGGAGAATAGATCC
TCAAAATGGCGTGATCAGCAGCAGTACGTCGTCTAGACGACGCCGGTCAA
CGCTTGGCGGGGGTGGTGGTGGTGGTACAGGAGGATTACGCTCAGGCCTC
TCTCGCAAGTTCGTGAGGAGCCTCATGCGGCACCTCAACATGCGCGCAGA
CTCCCGGCAGAGGGAGGAGCTCCGATCGATGGTCGAGACGCTAAAGTGTG
TCGCCAACCGACCGGGGGTTGACATGAAACAAGAGCTCAAGCGCGAGGCG
GTATCCCTCCTGGGCCCCGAGCTCGCGCGGGAAGCGTTCGAGGCATCGCT
GACGGAGACGCGCAATGACTTCTACCGCCAGCGCAGCGTCGCCGCCGCTG
CCGCAGCAGAAGCGGCCGCTTCCACGGAGGCCTTGGGAGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig66852:851..2042+

>mRNA_H-elongata_contig66852.14284.1 ID=mRNA_H-elongata_contig66852.14284.1|Name=mRNA_H-elongata_contig66852.14284.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2382bp|location=Sequence derived from alignment at H-elongata_contig66852:851..2042+ (Himanthalia elongata Himel1 dioecious)
AGGGGGTTGTCCGATATCTACAGTCACTATCATAGCCACGTGTTACTGCA
ATACGAGTGCTGTGGGGATTCGGTTGGGACGGGTCGAACCGATCCCATGG
CTACTCAAGTCTCGCTTCACTCAGGGGTCGGGGCTCTTGGTCACGGACTC
GCGGCAGTGATGGACCCCCCCTTGTCACCGACGGCCAGGCGACAGATACT
CTTCTCTCAACAGCAACCGGAACCCGCTGCAGTGTCTATACGCCACGATG
CGGCCGTCGCGCCCACGGCCGTGAGAGCGGTGGCGTCGGTTTATACAACC
AGATCTGGTGGAGGGTATCACAGAGTAACGGACCAGCTTTCCGCATTCGC
GACGTACCCAGAGAGAGAGGCACATCCCCTCGACGAGCGAGAACGGGAGG
AAGATATAATGCCTGCCGCAACCACCGCTGCTCCGGGAGCCGCCCCCGGT
GGCGTCAATGGCGGGGTCAGAACTGTACCATTCGCGGACGTGGAGGGTGA
CCGAAACACTGCTGTTGCCGTCAACTCTACAGGTGGGGTGAGCGCCGGCG
CTGTGACCAACGTCATGCCCGAAGACGTGGACATGAATTTTTTGGACGAT
GGCGTGATCTCGATGGCGACGGACGACGTCGACCTCGCATCTGTGCTGCC
GGTGACGGCTGCAGCCAACCGGGGTCTGGAAAGTAACGGCGGCCGACGGA
GGAGCAGTGTCGGCAGCGCCGTCGGTGTGGAGACTGGATCATCACCCTAT
CAAGCACCAACTTTCCGCCGGGGTAGCGTCAGCGGCGGGAGAATAGATCC
TCAAAATGGCGTGATCAGCAGCAGTACGTCGTCTAGACGACGCCGGTCAA
CGCTTGGCGGGGGTGGTGGTGGTGGTACAGGAGGATTACGCTCAGGCCTC
TCTCGCAAGTTCGTGAGGAGCCTCATGCGGCACCTCAACATGCGCGCAGA
CTCCCGGCAGAGGGAGGAGCTCCGATCGATGGTCGAGACGCTAAAGTGTG
TCGCCAACCGACCGGGGGTTGACATGAAACAAGAGCTCAAGCGCGAGGCG
GTATCCCTCCTGGGCCCCGAGCTCGCGCGGGAAGCGTTCGAGGCATCGCT
GACGGAGACGCGCAATGACTTCTACCGCCAGCGCAGCGTCGCCGCCGCTG
CCGCAGCAGAAGCGGCCGCTTCCACGGAGGCCTTGGGAGGCAGGGGGTTG
TCCGATATCTACAGTCACTATCATAGCCACGTGTTACTGCAATACGAGTG
CTGTGGGGATTCGGTTGGGACGGGTCGAACCGATCCCATGGCTACTCAAG
TCTCGCTTCACTCAGGGGTCGGGGCTCTTGGTCACGGACTCGCGGCAGTG
ATGGACCCCCCCTTGTCACCGACGGCCAGGCGACAGATACTCTTCTCTCA
ACAGCAACCGGAACCCGCTGCAGTGTCTATACGCCACGATGCGGCCGTCG
CGCCCACGGCCGTGAGAGCGGTGGCGTCGGTTTATACAACCAGATCTGGT
GGAGGGTATCACAGAGTAACGGACCAGCTTTCCGCATTCGCGACGTACCC
AGAGAGAGAGGCACATCCCCTCGACGAGCGAGAACGGGAGGAAGATATAA
TGCCTGCCGCAACCACCGCTGCTCCGGGAGCCGCCCCCGGTGGCGTCAAT
GGCGGGGTCAGAACTGTACCATTCGCGGACGTGGAGGGTGACCGAAACAC
TGCTGTTGCCGTCAACTCTACAGGTGGGGTGAGCGCCGGCGCTGTGACCA
ACGTCATGCCCGAAGACGTGGACATGAATTTTTTGGACGATGGCGTGATC
TCGATGGCGACGGACGACGTCGACCTCGCATCTGTGCTGCCGGTGACGGC
TGCAGCCAACCGGGGTCTGGAAAGTAACGGCGGCCGACGGAGGAGCAGTG
TCGGCAGCGCCGTCGGTGTGGAGACTGGATCATCACCCTATCAAGCACCA
ACTTTCCGCCGGGGTAGCGTCAGCGGCGGGAGAATAGATCCTCAAAATGG
CGTGATCAGCAGCAGTACGTCGTCTAGACGACGCCGGTCAACGCTTGGCG
GGGGTGGTGGTGGTGGTACAGGAGGATTACGCTCAGGCCTCTCTCGCAAG
TTCGTGAGGAGCCTCATGCGGCACCTCAACATGCGCGCAGACTCCCGGCA
GAGGGAGGAGCTCCGATCGATGGTCGAGACGCTAAAGTGTGTCGCCAACC
GACCGGGGGTTGACATGAAACAAGAGCTCAAGCGCGAGGCGGTATCCCTC
CTGGGCCCCGAGCTCGCGCGGGAAGCGTTCGAGGCATCGCTGACGGAGAC
GCGCAATGACTTCTACCGCCAGCGCAGCGTCGCCGCCGCTGCCGCAGCAG
AAGCGGCCGCTTCCACGGAGGCCTTGGGAGGC
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