mRNA_H-elongata_contig66824.14283.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66824.14283.1
Unique NamemRNA_H-elongata_contig66824.14283.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 230 bits (587), Expect = 2.790e-67
Identity = 136/359 (37.88%), Postives = 199/359 (55.43%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAREMDGQIARGVWQM-ERPKGKTVLGTRVVFMRKIDKNGRIEKYKCHLVAQGFRQIKDIHYEKSPSPTPAQASIRIVLGMMATLGWEAR*LDVDMAYLEAEVEDEIYVELPEAYLD--SRKQVGLLKKAMYGLVHAGLLW*KMFGIELEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKT-SLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 1074
            EP T+ EA+AS EWPQW+ AI  E+      G W++ E+P G  V+G+  VF  K D +G I KYK  LVAQGF QI  + Y  + +P    +SIRI+  + A   WE   +DV  AYL  ++E+EI+++ P  +      ++V  L K +YGL  AG  W K         GF RS  + SVF R      + ++ V VDDL +A+ +  +       L   F + DLGE  + LG  I RDR   T++  Q  YI T+  RF +    SL +++    +L+   SP T  + ++MR I YRE +G+LM+AA  TR D+S+A   L++F  NPG  HW AA++ ++YL  T++  +TY
Sbjct:   29 EPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFRHGPNGEIAIVAVSVDDLAIAANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQSPSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTY 387          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A2P6SMQ0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SMQ0_ROSCH)

HSP 1 Score: 231 bits (590), Expect = 7.510e-66
Identity = 132/361 (36.57%), Postives = 211/361 (58.45%), Query Frame = 1
Query:    4 DPEPTTMGEAQASSEWPQWKRAIAREMDGQIARGVWQMERPK-GKTVLGTRVVFMRKIDKNGRIEKYKCHLVAQGFRQIKDIHYEKSPSPTPAQASIRIVLGMMATLGWEAR*LDVDMAYLEAEVEDEIYVELPEAYLDSRKQ--VGLLKKAMYGLVHAGLLW*KMFGIELEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGV-TKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 1074
            D +PT+  +A  S++   W +A+  E+D     GVW++ +PK     +G + VF  K D +G IE++K  LVA+GF Q + I++ ++ SP   + S RI++ ++A    E   +DV  A+L  E+E+EI++  PE ++++ K+  V  LKK++YGL  A   W K F   + + GF  +  +  V+ +++ G   + +++YVDD+L+AS+  +  +     L S F +K+LGEASY LG  I RDR  G L   Q  YI  + +RFG+ T  +    ++ G  L+K+  P+T+ E  EM  I Y  +VG+LM+A   TR D+SFA   L++F  NPG  HW A +K L+YL RT+D  + Y
Sbjct:  245 DNDPTSFKQATGSNDSDAWTQAMIAELDSMYKNGVWELVKPKENHKPIGCKWVFKTKRDVSGNIERHKARLVAKGFTQKEGIYFTETFSPVSTKDSFRIIMALVAHYDMELHQMDVKTAFLNGELEEEIFMVQPEGFIEAGKENMVCRLKKSIYGLKQASRQWYKKFDSVVSSFGFTENLVDECVYLKVV-GNNFIFLILYVDDILLASSNVKLLKDTKAFLSSNFDMKELGEASYVLGIEIKRDRKQGLLGLSQQNYISKILKRFGMETCANGEVPMSKGDKLTKNQCPKTENEKTEMESIPYARLVGSLMYAQVCTRPDLSFAVGMLSRFQSNPGHEHWTAGKKVLRYLQRTKDYMLVY 604          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 232 bits (592), Expect = 1.170e-64
Identity = 133/360 (36.94%), Postives = 206/360 (57.22%), Query Frame = 1
Query:    1 LDPEPTTMGEAQASSEWPQWKRAIAREMDGQIARGVWQMER-PKGKTVLGTRVVFMRKIDKNGRIEKYKCHLVAQGFRQIKDIHYEKSPSPTPAQASIRIVLGMMATLGWEAR*LDVDMAYLEAEVEDEIYVELPEAYLDSRKQVGLLKKAMYGLVHAGLLW*KMFGIELEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIF-YREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 1074
            +D  P ++ EA+AS EW +WK+A+  EM      G +  E  P G+  +G + VF++K D++G I +YK  LVAQG+ QI  + Y ++ +P     S+R  LG+ A    E   +DV  AYL  E+E+EIY+  PE Y D   +V  L+K +YGL  +G  W + F  +L + GF + +A+  V++RI  G + + I V+VDDLL+ S T  D  +   +L + F +KDLGE    +G  I RDR  GT++  Q QYI+ +  RFG+     +S+      + K    +TD  V +   +  Y+ ++G+L++AA  TR DIS A  +L +F  NPGP HW A ++  +YL  TR+L + +
Sbjct:  875 IDNFPRSVAEAEASPEWAEWKKAMDEEMSVIKEMGTYTKEDLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTI-ITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGMQNARPVSTPLDPNVILKK---RTDDLVADPAMVGGYQSVIGSLLYAARGTRPDISHAVQELGQFASNPGPEHWTALKRVCRYLAGTRNLELVF 1230          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 224 bits (571), Expect = 3.240e-64
Identity = 132/360 (36.67%), Postives = 204/360 (56.67%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAREMDGQIARGVWQM-ERPKGKTVLGTRVVFMRKIDKNGRIEKYKCHLVAQGFRQIKDIHYEKSPSPTPAQASIRIVLGMMATLGWEAR*LDVDMAYLEAEVEDEIYVELPEAYLDSRKQ--VGLLKKAMYGLVHAGLLW*KMFGIELEAKGFQRSQANPSVF-RRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKT-SLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 1074
            +P ++ EA  S+EWP+WK AI +EM    + G + + E PK   ++G++ VF  K +    IE YK  LVAQGF Q+  I + ++ +P    ASI ++L + A   WE   +DV  AYL  ++E+EIY++ P    +  K+  V  LK+ +YGL  +G  + K    EL + G  RS+ +  VF  R    V++++I + VDD  +A  TK       R++ + F + DLGE  + LG  + RDR+  TL+  QH YI  +  RF +    SL + +  G  LS    P T  + E+M+ I YRE++G+LM+AA  TR DI++A   L++F  NPG  HW AA++  +YL  TR+  +T+
Sbjct:  111 DPASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTF 469          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 230 bits (587), Expect = 5.530e-64
Identity = 131/359 (36.49%), Postives = 202/359 (56.27%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAREMDGQIARGVWQMER-PKGKTVLGTRVVFMRKIDKNGRIEKYKCHLVAQGFRQIKDIHYEKSPSPTPAQASIRIVLGMMATLGWEAR*LDVDMAYLEAEVEDEIYVELPEAYLDSRKQVGLLKKAMYGLVHAGLLW*KMFGIELEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIF---YREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 1074
            EP ++ EAQAS EWP+W++A+  E D     G W+++  PK +  +G + VF RK +K G++ KYK  LVAQG+ QI  + + ++ +P     SIR +L +     WE   +DV  AYL  ++++EIY+  PE + D   ++  L+K +YGL  +G  W +    EL   G++R +A+P V+        V +I V+VDDLL+ + + +  E+  RDL   F + DLGE    +G  I RDR AG +   Q  YI+++ +R+ +   + +     G  L  + +   + E EE        Y  +VG+LM+AA  TR DIS+A   L+K+   P P HW AA++ L+YL  TRDL ITY
Sbjct:  906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQLENANAV-----GMPLDPNVAFTAEDENEEADDRLAGGYASMVGSLMYAAVGTRPDISYAVQTLSKYTACPRPVHWTAAKRVLRYLAGTRDLHITY 1259          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A5N6NCI1_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NCI1_9ASTR)

HSP 1 Score: 218 bits (554), Expect = 1.240e-63
Identity = 125/359 (34.82%), Postives = 202/359 (56.27%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAREMDGQIARGVWQM-ERPKGKTVLGTRVVFMRKIDKNGRIEKYKCHLVAQGFRQIKDIHYEKSPSPTPAQASIRIVLGMMATLGWEAR*LDVDMAYLEAEVEDEIYVELPEAYLDSRKQ--VGLLKKAMYGLVHAGLLW*KMFGIELEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTS-LISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 1074
            +P++  EA  S +  +W  A+  E++      VW++ E   G   +G + V+  K+D NG +E++K  LVA+G+ Q + I Y+++ SP   + S+RIV+ ++A    E   +DV  A+L  E+ +++Y+  PE +    K+  V  LKK+ YGL  A   W   F   ++  GF  +Q +   + + + G    ++V+YVDD+L+AS +     ++ R L S F +KDLGEASY +G  I RDR +GTL   Q  YI  +  R+ +   S L++ V  G        P+T+ E E+MR I Y  +VG++M+A   TR DI++ A  L ++  NPG  HW+A +K L+YL  T+D  +TY
Sbjct:   35 DPSSYNEAITSDQSSEWHNAMIDELESMDKNNVWELVELLNGAKPVGCKWVYKTKLDPNGNVERFKARLVAKGYTQKEGIDYQETFSPVSQKDSLRIVMALVAHFDLELHQMDVKTAFLNGELYEDVYMTQPEGFKPKGKEHLVCKLKKSTYGLKQASRQWYLKFDEVMKKHGFVMNQVDQCNYLK-MSGSNFAILVIYVDDILLASNSLDMLHESKRLLSSNFDMKDLGEASYVIGIEIHRDRASGTLGLSQKAYINRVLTRYNMQHCSPLVAPVVKGDVFGTFQCPKTEVEKEQMRLIPYASVVGSIMYANVCTRPDIAYIAGMLGRYQSNPGLDHWKATKKVLRYLQGTKDYKLTY 392          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 228 bits (582), Expect = 2.420e-63
Identity = 131/353 (37.11%), Postives = 203/353 (57.51%), Query Frame = 1
Query:   28 EAQASSEWPQWKRAIAREMDGQIARGVWQM-ERPKGKTVLGTRVVFMRKIDKNGRIEKYKCHLVAQGFRQIKDIHYEKSPSPTPAQASIRIVLGMMATLGWEAR*LDVDMAYLEAEVEDEIYVELP--EAYLDSRKQVGLLKKAMYGLVHAGLLW*KMFGIELEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTSLISS-VAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 1074
            EA+   +WP+W+ AI  E+D  +A G W++  RP    V+ ++ V   K +  G I+KYK  LVA+GF Q+  + Y  + +P    +SIR++L + A  GW A   D + AYL +++++++Y+E P   A+ D +  V  L+KA+YGL   G  W +     L   GF R +A+  VF +   G  ++V+ V+VDD L+  +++R  +     + + + I DLG  S+ LG  I+ D  AGTL+  QH YI+ +  RF  T    +S  +   + LSK+  P++ AEV  MR++ YRE +GALM+AA  TR DI+FA   LA+F  NPG  HW A ++  +YL  TR L + Y
Sbjct:  803 EAKKRPDWPKWQEAIKAELDSLVANGTWRIVPRPSSGNVVDSKWVLRVKKNAAGEIDKYKARLVARGFTQVYGVDYYDTFAPVAKLSSIRLLLAIAARNGWAADSFDFNSAYLNSKLDEDVYLEQPPDHAFADRKAFVLKLEKALYGLKQGGRKWYETLCAALGRLGFTRVEADWGVFYK-HEGEHLIVLAVHVDDCLLTGSSRRLLDDTKSKIGTVYKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQFAQNPGQPHWDAVKRIFRYLLGTRTLSLIY 1154          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 227 bits (579), Expect = 6.500e-63
Identity = 135/360 (37.50%), Postives = 205/360 (56.94%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAREMDGQIARGVWQM-ERPKGKTVLGTRVVFMRKIDKNGRIEKYKCHLVAQGFRQIKDIHYEKSPSPTPAQASIRIVLGMMATLGWEAR*LDVDMAYLEAEVEDEIYVELPEAYLDSRKQ--VGLLKKAMYGLVHAGLLW*KMFGIELEAKGFQRSQANPSVF-RRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKT-SLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 1074
            +P ++ EA  S+EWP+WK AIA+EM    + G + + E PK   ++G++ VF  K +  G IE YK  LVAQGF Q+  I + ++ +P    ASIR++L + A   WE   +DV  AYL  ++E+EIY+  P    +  K+  V  LK+ +YGL  +G  + K    EL + G  RS+ +  VF  R    V++++I + VDD  +A  TK       R++ + F + DLGE  + LG  + RDR+A TL+  Q  YI  +  RF +    SL + +  G  LS    P T  + E+M+ I YRE +G+LM+AA  TR DI++A   L++F  NPG  HW AA++  +YL  TR+  +T+
Sbjct:  921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMQNPGRPHWEAAKRVFRYLAGTRERWLTF 1279          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A5N6M1Y8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M1Y8_9ASTR)

HSP 1 Score: 218 bits (554), Expect = 4.190e-62
Identity = 124/359 (34.54%), Postives = 206/359 (57.38%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAREMDGQIARGVWQM-ERPKGKTVLGTRVVFMRKIDKNGRIEKYKCHLVAQGFRQIKDIHYEKSPSPTPAQASIRIVLGMMATLGWEAR*LDVDMAYLEAEVEDEIYVELPEAYLDSRKQ--VGLLKKAMYGLVHAGLLW*KMFGIELEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTS-LISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 1074
            +PTT  +A    +  QW  A+  E+       VW + E P G   +G + V+  K+D NG IE+YK  LVA+G+ Q + I Y+++ SP   + S+RIV+ ++A    E   +DV  A+L  ++ ++++++ PE +    K+  V  L K++YGL  A   W   F   ++   F ++Q +  ++ +I  G   V++V+YVDD+L+AS       ++ R L + F +KDLGEASY +G  I R+R+ GTL   Q  YI+ + +RF + + S  ++ V  G        P+++AE+++MR I Y  +VG+LM+A   TR DI++    L ++  NPG  HW+AA+K L+YL  T++  +TY
Sbjct:  109 DPTTFKDAMNCDQSTQWLDAMKDELKSMKTNNVWTLTELPTGAKPVGCKWVYKTKLDPNGNIERYKARLVAKGYTQREGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLHEDVFMKQPEGFEPKGKEHMVCKLNKSIYGLKQASRQWYIKFDEVMKKHNFIKNQVDQCIYLKI-SGSKFVILVLYVDDILLASNNLDMLYESKRLLSANFDMKDLGEASYVIGIEIHRNRSIGTLGLSQKAYIERILKRFNMQQCSPSVAPVVKGDNFGSYQCPKSEAEIDQMRLIPYASVVGSLMYAQVCTRPDIAYITGMLGRYQSNPGLDHWKAAKKVLRYLQGTKEYKLTY 466          
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 4.950e-62
Identity = 127/341 (37.24%), Postives = 193/341 (56.60%), Query Frame = 1
Query:   58 WKRAIAREMDGQIARGVWQME--RPKGKTVLGTRVVFMRKIDKNGRIEKYKCHLVAQGFRQIKDIHYEKSPSPTPAQASIRIVLGMMATLGWEAR*LDVDMAYLEAEVEDEIYVELPEAYLDSRKQVGLLKKAMYGLVHAGLLW*KMFGIELEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDKEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGERFGVTKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAATMTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY 1074
            W++A+  E +G +  G +      P+G+  + ++  F  K +K G+I+ +K  LVA+GF QI ++ Y  S SP P+ ASI+++L +    G      DV  AY  A +++E++++LP    D   ++   ++A+YGL  +G  W       L   GF++ +A+P VFR+++  VVV++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL   Q  YI +M ERF V  TS I +  G     K +        EE  +   RE +G++MW +T +R D+SFA   +A+    P   HW A QK L YL  TRDLGITY
Sbjct:  752 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 1084          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66824.14283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y9ZVS1_9AGAM2.790e-6737.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6SMQ0_ROSCH7.510e-6636.57Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A284QR88_ARMOS1.170e-6436.94Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A401GP19_9APHY3.240e-6436.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GYH9_9APHY5.530e-6436.49Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A5N6NCI1_9ASTR1.240e-6334.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SPD4_PYCCI2.420e-6337.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A401GN13_9APHY6.500e-6337.50Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A5N6M1Y8_9ASTR4.190e-6234.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE4.950e-6237.24Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66824contigH-elongata_contig66824:2276..3349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue5.3e-27
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size1074
Cds size585
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931058.099412-UTR-H-elongata_contig66824:2275..27641622931058.099412-UTR-H-elongata_contig66824:2275..2764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66824 2276..2764 +
1691679680.6618783-UTR-H-elongata_contig66824:2275..27641691679680.6618783-UTR-H-elongata_contig66824:2275..2764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66824 2276..2764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931058.1157844-CDS-H-elongata_contig66824:2764..33491622931058.1157844-CDS-H-elongata_contig66824:2764..3349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66824 2765..3349 +
1691679680.6745622-CDS-H-elongata_contig66824:2764..33491691679680.6745622-CDS-H-elongata_contig66824:2764..3349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66824 2765..3349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66824.14283.1prot_H-elongata_contig66824.14283.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66824 2765..3349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66824.14283.1

>prot_H-elongata_contig66824.14283.1 ID=prot_H-elongata_contig66824.14283.1|Name=mRNA_H-elongata_contig66824.14283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
MFGIELEAKGFQRSQANPSVFRRILHGVVVVVIVVYVDDLLVASATKRDK
EQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLTFDQHQYIQTMGER
FGVTKTSLISSVAGGKALSKSDSPQTDAEVEEMRQIFYREIVGALMWAAT
MTRSDISFAAHQLAKFNDNPGPTHWRAAQKALQYLWRTRDLGITY
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mRNA from alignment at H-elongata_contig66824:2276..3349+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66824.14283.1 ID=mRNA_H-elongata_contig66824.14283.1|Name=mRNA_H-elongata_contig66824.14283.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1074bp|location=Sequence derived from alignment at H-elongata_contig66824:2276..3349+ (Himanthalia elongata Himel1 dioecious)
CTAGACCCAGAGCCGACAACCATGGGCGAGGCGCAAGCGTCGTCGGAGTG GCCGCAATGGAAAAGGGCGATCGCGCGCGAGATGGATGGGCAAATTGCTC GAGGCGTGTGGCAGATGGAGCGCCCAAAAGGGAAGACGGTGTTGGGCACG AGAGTAGTTTTCATGCGGAAAATCGACAAGAATGGAAGGATCGAGAAGTA TAAATGTCATCTCGTGGCGCAGGGTTTCAGGCAGATCAAAGACATACACT ACGAGAAATCCCCCTCTCCGACTCCTGCGCAGGCCAGTATTAGAATAGTA CTGGGCATGATGGCGACTCTTGGCTGGGAGGCGCGGTAGCTAGACGTCGA TATGGCCTACCTGGAGGCCGAAGTGGAGGACGAGATCTACGTTGAGCTCC CGGAGGCATACCTTGACTCCAGGAAGCAAGTCGGCCTACTAAAGAAGGCA ATGTACGGACTCGTCCACGCCGGGCTGCTGTGGTAAAAAATGTTCGGGAT CGAGCTCGAGGCGAAGGGTTTCCAGAGATCTCAAGCCAACCCATCCGTAT TCCGGCGGATTCTCCACGGGGTAGTGGTAGTCGTCATTGTGGTCTACGTC GACGACCTGCTGGTTGCTAGTGCGACGAAACGTGACAAGGAGCAAGCGGT GAGGGACCTGTGCTCGTGTTTCCCCATCAAGGATCTGGGGGAGGCTTCGT ATTACCTGGGATGCCACATCACGCGGGACCGGAACGCCGGGACACTGACG TTCGACCAGCACCAGTACATACAGACTATGGGGGAACGTTTTGGCGTGAC GAAGACCAGCCTCATCTCGTCCGTGGCAGGAGGGAAAGCCCTTTCGAAAT CAGACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGCGCCAGATTTTC TACCGGGAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGGTC CGACATTTCATTCGCTGCGCACCAACTGGCGAAATTCAACGACAACCCGG GACCGACACACTGGAGGGCAGCCCAGAAAGCGCTGCAATATTTATGGCGC ACTCGGGACCTCGGGATCACCTAC
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Coding sequence (CDS) from alignment at H-elongata_contig66824:2276..3349+

>mRNA_H-elongata_contig66824.14283.1 ID=mRNA_H-elongata_contig66824.14283.1|Name=mRNA_H-elongata_contig66824.14283.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig66824:2276..3349+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGGGATCGAGCTCGAGGCGAAGGGTTTCCAGAGATCTCAAGCCAA
CCCATCCGTATTCCGGCGGATTCTCCACGGGGTAGTGGTAGTCGTCATTG
TGGTCTACGTCGACGACCTGCTGGTTGCTAGTGCGACGAAACGTGACAAG
GAGCAAGCGGTGAGGGACCTGTGCTCGTGTTTCCCCATCAAGGATCTGGG
GGAGGCTTCGTATTACCTGGGATGCCACATCACGCGGGACCGGAACGCCG
GGACACTGACGTTCGACCAGCACCAGTACATACAGACTATGGGGGAACGT
TTTGGCGTGACGAAGACCAGCCTCATCTCGTCCGTGGCAGGAGGGAAAGC
CCTTTCGAAATCAGACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGC
GCCAGATTTTCTACCGGGAAATCGTTGGGGCCCTAATGTGGGCAGCGACG
ATGACCAGGTCCGACATTTCATTCGCTGCGCACCAACTGGCGAAATTCAA
CGACAACCCGGGACCGACACACTGGAGGGCAGCCCAGAAAGCGCTGCAAT
ATTTATGGCGCACTCGGGACCTCGGGATCACCTACATGTTCGGGATCGAG
CTCGAGGCGAAGGGTTTCCAGAGATCTCAAGCCAACCCATCCGTATTCCG
GCGGATTCTCCACGGGGTAGTGGTAGTCGTCATTGTGGTCTACGTCGACG
ACCTGCTGGTTGCTAGTGCGACGAAACGTGACAAGGAGCAAGCGGTGAGG
GACCTGTGCTCGTGTTTCCCCATCAAGGATCTGGGGGAGGCTTCGTATTA
CCTGGGATGCCACATCACGCGGGACCGGAACGCCGGGACACTGACGTTCG
ACCAGCACCAGTACATACAGACTATGGGGGAACGTTTTGGCGTGACGAAG
ACCAGCCTCATCTCGTCCGTGGCAGGAGGGAAAGCCCTTTCGAAATCAGA
CAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGCGCCAGATTTTCTACC
GGGAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGGTCCGAC
ATTTCATTCGCTGCGCACCAACTGGCGAAATTCAACGACAACCCGGGACC
GACACACTGGAGGGCAGCCCAGAAAGCGCTGCAATATTTATGGCGCACTC
GGGACCTCGGGATCACCTAC
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