mRNA_H-elongata_contig66790.14281.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66790.14281.1
Unique NamemRNA_H-elongata_contig66790.14281.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66790.14281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66790contigH-elongata_contig66790:209..3084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2876
Cds size1743
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66790.14281.1prot_H-elongata_contig66790.14281.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66790 234..1976 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.7340627-UTR-H-elongata_contig66790:208..2331622931057.7340627-UTR-H-elongata_contig66790:208..233Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66790 209..233 +
1691679680.4936337-UTR-H-elongata_contig66790:208..2331691679680.4936337-UTR-H-elongata_contig66790:208..233Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66790 209..233 +
1622931057.7639284-UTR-H-elongata_contig66790:1976..30841622931057.7639284-UTR-H-elongata_contig66790:1976..3084Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66790 1977..3084 +
1691679680.5161636-UTR-H-elongata_contig66790:1976..30841691679680.5161636-UTR-H-elongata_contig66790:1976..3084Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66790 1977..3084 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.7476416-CDS-H-elongata_contig66790:233..19761622931057.7476416-CDS-H-elongata_contig66790:233..1976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66790 234..1976 +
1691679680.50669-CDS-H-elongata_contig66790:233..19761691679680.50669-CDS-H-elongata_contig66790:233..1976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66790 234..1976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66790.14281.1

>prot_H-elongata_contig66790.14281.1 ID=prot_H-elongata_contig66790.14281.1|Name=mRNA_H-elongata_contig66790.14281.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=581bp
MSSLVAANQISQAEVNKNRAVAEAILNEQQQPQHELNQMRPRRHCGRLGC
NLSASFGVAGSGKRQFCGRHASKKHVNLDRRTCSHLDCGTTASFGTRESG
RRERCSQHALEGMVYLDSRYCLHEGCFTSASFGFDGSRKREACAQHAVMG
MVRLDRKNCMQSGCEVEASYGAPGSRKRDYCATHAAHDAVYITGKQCSQD
GCQMEASHGMKGSKSPDLCERHATKGMTTVGTKKCNHMGCGKRPSYGVRG
SGRPEFCAEHAGEGMINVVSKRCAHRNCPKIPTFGVKGSGKREFCSQHAA
KGMVTVGRRMCGHGDCDKFPTYGAEGSTKRQFCAQHAQPGMIDFTRKCAI
AGCYTHATYGDVAGSRKRKFCSRHVGQGVICAQKDGKLCRAKRCRKSATF
SVNGKILELCAEHAGREEYDDLATGANVPVASLVLSTSEESIDSTSGAGL
VGAGSVDDSSLAENTSRTETESPADDVDNMDYGIHLRQGLSRSERHHPGV
ETEAICRVSPPAPEIKRGGSLWSSARPRQSPHVSLVKLRVTRKWSWPNNP
LLQTQDGWSKWNWQSALISASRGIDRSTTA*
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mRNA from alignment at H-elongata_contig66790:209..3084+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66790.14281.1 ID=mRNA_H-elongata_contig66790.14281.1|Name=mRNA_H-elongata_contig66790.14281.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2876bp|location=Sequence derived from alignment at H-elongata_contig66790:209..3084+ (Himanthalia elongata Himel1 dioecious)
AGATCGCCGGGGATAATAATATCAGATGTCGAGTCTGGTCGCCGCCAATC
AAATCAGCCAGGCAGAAGTTAACAAGAACAGAGCTGTTGCTGAAGCCATA
CTCAACGAGCAACAGCAACCGCAACATGAGTTAAATCAAATGCGACCGCG
AAGACATTGTGGCCGCCTGGGCTGCAACTTATCGGCATCATTTGGCGTAG
CAGGCAGCGGGAAGCGCCAGTTTTGCGGCCGACACGCCAGCAAGAAGCAC
GTGAACCTAGACCGCAGGACGTGTTCCCACTTGGACTGCGGCACCACGGC
ATCATTCGGAACGAGAGAAAGCGGCAGGCGGGAAAGATGCTCTCAGCACG
CGCTGGAGGGAATGGTTTATTTGGACTCCAGGTACTGCTTGCACGAAGGC
TGCTTCACCTCAGCTTCGTTCGGGTTCGATGGAAGTAGAAAGCGAGAGGC
TTGCGCGCAGCATGCTGTGATGGGCATGGTGCGGCTGGACCGGAAGAATT
GCATGCAATCTGGGTGCGAGGTGGAGGCGTCTTACGGGGCTCCGGGTAGC
CGGAAGCGCGACTACTGCGCCACGCATGCCGCGCACGATGCCGTCTATAT
AACCGGTAAGCAATGTAGCCAGGACGGGTGTCAGATGGAGGCGTCTCACG
GCATGAAGGGCAGCAAATCGCCGGATCTCTGCGAGCGGCATGCGACGAAA
GGAATGACCACCGTCGGGACGAAAAAGTGCAACCACATGGGATGCGGGAA
GCGACCCTCTTACGGCGTGAGAGGCAGTGGCAGGCCTGAGTTTTGCGCCG
AACACGCCGGCGAGGGCATGATCAATGTCGTGAGCAAGAGGTGCGCTCAC
CGAAATTGTCCCAAGATCCCGACATTTGGCGTCAAGGGCAGCGGGAAGAG
GGAATTCTGTAGCCAGCACGCAGCCAAAGGGATGGTCACCGTAGGCCGCA
GAATGTGCGGCCATGGCGACTGCGACAAGTTCCCAACTTACGGTGCAGAG
GGCAGCACGAAAAGGCAGTTTTGCGCCCAGCACGCCCAGCCTGGAATGAT
AGACTTCACCAGGAAATGCGCCATCGCTGGGTGCTACACACACGCCACCT
ACGGCGACGTGGCAGGCAGCAGGAAGCGGAAGTTCTGTTCCAGACACGTG
GGGCAGGGAGTCATCTGTGCGCAGAAAGATGGCAAGCTTTGCCGCGCAAA
GAGGTGTAGGAAAAGCGCGACATTCAGCGTCAACGGCAAGATCTTGGAGC
TCTGCGCTGAGCACGCTGGGCGGGAAGAGTACGATGATCTCGCGACTGGG
GCAAATGTCCCGGTAGCTTCTCTGGTCCTATCCACAAGCGAAGAAAGCAT
CGATTCTACTAGCGGGGCGGGTCTTGTTGGCGCAGGTTCTGTCGATGACT
CCAGTCTTGCTGAAAACACGAGTCGTACTGAAACCGAAAGCCCCGCCGAC
GATGTTGACAATATGGACTACGGCATCCATCTCCGTCAGGGCCTCAGTCG
ATCGGAACGTCACCATCCTGGAGTCGAAACTGAGGCGATCTGTCGCGTAT
CTCCTCCAGCGCCAGAGATTAAACGAGGCGGTTCATTGTGGTCATCAGCT
CGACCGCGTCAATCGCCACATGTGTCCCTCGTGAAGCTGCGGGTCACCAG
AAAATGGTCTTGGCCCAACAACCCACTTCTGCAGACGCAAGACGGGTGGT
CCAAGTGGAACTGGCAATCTGCACTCATCTCAGCCTCTCGCGGTATAGAC
AGATCCACAACCGCGTAAGTCTTCGGTGTTCCCGCTTGGTACTTATAGTG
TCAGGATATTCATAGCCGCGGCCGCCAGTACGTAACCTTGTATTCCCAAG
TTTAGCTCGCCGAGGGTCGAAGCTCTTCCTGCTGAAGCGTCTTTACCAGC
TACTGCGTTGATGGGATCGGTCGATAGATATTTGTTTCCACCGGGAAGCA
GCAACATTTCACCATCACAGTGTTATTTTTCAGTCTTGCCAGACATATTC
ACTATAGCCCAGGGTGTAGCTTATGTTGTTGGGTGTAACAGTTTTAGCCG
GAGCGTCGGGTCTGGTGTAAGCCAGGTATTCGCTGGACGATAGTTGATGT
TTTACGTCTTGGATAAATGCACGTGCGATTGTGTCATGATGCATCTTTTC
CCATCATGCATTCAGAGAGTTTTTTTAGTACATGTTAAAAGTAGAGGGAG
TTTAACCTCGAGTCACGGGCGCAGGGCGATATCGGGCCAGAAACGTAAAC
GAGTGAGCTCAGTTGTTTTTTCTAATGAAAATCCAATCACACGACTAATC
TTCCTGTAGCTTGCATCTCTAAGAAAGTAGCTTGATATCATTGAGGTAGC
TCTGTCTTCGGGTCGTGGCGAAATTTGTACTGTCTTTTTTTCTTCATGCT
AGAGAGTTTCGAAAATGATTATTTTGGCACATGTAGGTCTCAAAGTCATG
AAATTAATACGGCATTTTTTTTAGTTTACTCTTAAGAACCGCAATAATGC
GCTTCATTTTTATAGAGCGGCGAAATCGACAAAAGCCCTAGATAGTGGCT
GAGGGTAGAAAAGGATGCTGCAGTAAGCCCCGTTCAGCAGTTGACCACAT
TGCTTTTGCTCGCCCTAGAATAAGGTATGTATCTGTTACAATAGGAGGAT
CAGGAGGAGAAAGTAAAAACAATGACTTGATTTTGAAATGAAGACGCACG
TGCAGCGTCTGATCATGGTCCAGTCACCCCGCGCTCATGGTCAGCAGCGG
AGCTGGACCCACTCGCTATGTATTGGCACGAAGCCTCGATATTATATAGT
ATATAGTATATATTTTTATAATATATATCGGTATAATATGTACGATATGT
ATGTGTGGTCATCACACATAGCAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig66790:209..3084+

>mRNA_H-elongata_contig66790.14281.1 ID=mRNA_H-elongata_contig66790.14281.1|Name=mRNA_H-elongata_contig66790.14281.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3486bp|location=Sequence derived from alignment at H-elongata_contig66790:209..3084+ (Himanthalia elongata Himel1 dioecious)
ATGTCGAGTCTGGTCGCCGCCAATCAAATCAGCCAGGCAGAAGTTAACAA
GAACAGAGCTGTTGCTGAAGCCATACTCAACGAGCAACAGCAACCGCAAC
ATGAGTTAAATCAAATGCGACCGCGAAGACATTGTGGCCGCCTGGGCTGC
AACTTATCGGCATCATTTGGCGTAGCAGGCAGCGGGAAGCGCCAGTTTTG
CGGCCGACACGCCAGCAAGAAGCACGTGAACCTAGACCGCAGGACGTGTT
CCCACTTGGACTGCGGCACCACGGCATCATTCGGAACGAGAGAAAGCGGC
AGGCGGGAAAGATGCTCTCAGCACGCGCTGGAGGGAATGGTTTATTTGGA
CTCCAGGTACTGCTTGCACGAAGGCTGCTTCACCTCAGCTTCGTTCGGGT
TCGATGGAAGTAGAAAGCGAGAGGCTTGCGCGCAGCATGCTGTGATGGGC
ATGGTGCGGCTGGACCGGAAGAATTGCATGCAATCTGGGTGCGAGGTGGA
GGCGTCTTACGGGGCTCCGGGTAGCCGGAAGCGCGACTACTGCGCCACGC
ATGCCGCGCACGATGCCGTCTATATAACCGGTAAGCAATGTAGCCAGGAC
GGGTGTCAGATGGAGGCGTCTCACGGCATGAAGGGCAGCAAATCGCCGGA
TCTCTGCGAGCGGCATGCGACGAAAGGAATGACCACCGTCGGGACGAAAA
AGTGCAACCACATGGGATGCGGGAAGCGACCCTCTTACGGCGTGAGAGGC
AGTGGCAGGCCTGAGTTTTGCGCCGAACACGCCGGCGAGGGCATGATCAA
TGTCGTGAGCAAGAGGTGCGCTCACCGAAATTGTCCCAAGATCCCGACAT
TTGGCGTCAAGGGCAGCGGGAAGAGGGAATTCTGTAGCCAGCACGCAGCC
AAAGGGATGGTCACCGTAGGCCGCAGAATGTGCGGCCATGGCGACTGCGA
CAAGTTCCCAACTTACGGTGCAGAGGGCAGCACGAAAAGGCAGTTTTGCG
CCCAGCACGCCCAGCCTGGAATGATAGACTTCACCAGGAAATGCGCCATC
GCTGGGTGCTACACACACGCCACCTACGGCGACGTGGCAGGCAGCAGGAA
GCGGAAGTTCTGTTCCAGACACGTGGGGCAGGGAGTCATCTGTGCGCAGA
AAGATGGCAAGCTTTGCCGCGCAAAGAGGTGTAGGAAAAGCGCGACATTC
AGCGTCAACGGCAAGATCTTGGAGCTCTGCGCTGAGCACGCTGGGCGGGA
AGAGTACGATGATCTCGCGACTGGGGCAAATGTCCCGGTAGCTTCTCTGG
TCCTATCCACAAGCGAAGAAAGCATCGATTCTACTAGCGGGGCGGGTCTT
GTTGGCGCAGGTTCTGTCGATGACTCCAGTCTTGCTGAAAACACGAGTCG
TACTGAAACCGAAAGCCCCGCCGACGATGTTGACAATATGGACTACGGCA
TCCATCTCCGTCAGGGCCTCAGTCGATCGGAACGTCACCATCCTGGAGTC
GAAACTGAGGCGATCTGTCGCGTATCTCCTCCAGCGCCAGAGATTAAACG
AGGCGGTTCATTGTGGTCATCAGCTCGACCGCGTCAATCGCCACATGTGT
CCCTCGTGAAGCTGCGGGTCACCAGAAAATGGTCTTGGCCCAACAACCCA
CTTCTGCAGACGCAAGACGGGTGGTCCAAGTGGAACTGGCAATCTGCACT
CATCTCAGCCTCTCGCGGTATAGACAGATCCACAACCGCGTAAATGTCGA
GTCTGGTCGCCGCCAATCAAATCAGCCAGGCAGAAGTTAACAAGAACAGA
GCTGTTGCTGAAGCCATACTCAACGAGCAACAGCAACCGCAACATGAGTT
AAATCAAATGCGACCGCGAAGACATTGTGGCCGCCTGGGCTGCAACTTAT
CGGCATCATTTGGCGTAGCAGGCAGCGGGAAGCGCCAGTTTTGCGGCCGA
CACGCCAGCAAGAAGCACGTGAACCTAGACCGCAGGACGTGTTCCCACTT
GGACTGCGGCACCACGGCATCATTCGGAACGAGAGAAAGCGGCAGGCGGG
AAAGATGCTCTCAGCACGCGCTGGAGGGAATGGTTTATTTGGACTCCAGG
TACTGCTTGCACGAAGGCTGCTTCACCTCAGCTTCGTTCGGGTTCGATGG
AAGTAGAAAGCGAGAGGCTTGCGCGCAGCATGCTGTGATGGGCATGGTGC
GGCTGGACCGGAAGAATTGCATGCAATCTGGGTGCGAGGTGGAGGCGTCT
TACGGGGCTCCGGGTAGCCGGAAGCGCGACTACTGCGCCACGCATGCCGC
GCACGATGCCGTCTATATAACCGGTAAGCAATGTAGCCAGGACGGGTGTC
AGATGGAGGCGTCTCACGGCATGAAGGGCAGCAAATCGCCGGATCTCTGC
GAGCGGCATGCGACGAAAGGAATGACCACCGTCGGGACGAAAAAGTGCAA
CCACATGGGATGCGGGAAGCGACCCTCTTACGGCGTGAGAGGCAGTGGCA
GGCCTGAGTTTTGCGCCGAACACGCCGGCGAGGGCATGATCAATGTCGTG
AGCAAGAGGTGCGCTCACCGAAATTGTCCCAAGATCCCGACATTTGGCGT
CAAGGGCAGCGGGAAGAGGGAATTCTGTAGCCAGCACGCAGCCAAAGGGA
TGGTCACCGTAGGCCGCAGAATGTGCGGCCATGGCGACTGCGACAAGTTC
CCAACTTACGGTGCAGAGGGCAGCACGAAAAGGCAGTTTTGCGCCCAGCA
CGCCCAGCCTGGAATGATAGACTTCACCAGGAAATGCGCCATCGCTGGGT
GCTACACACACGCCACCTACGGCGACGTGGCAGGCAGCAGGAAGCGGAAG
TTCTGTTCCAGACACGTGGGGCAGGGAGTCATCTGTGCGCAGAAAGATGG
CAAGCTTTGCCGCGCAAAGAGGTGTAGGAAAAGCGCGACATTCAGCGTCA
ACGGCAAGATCTTGGAGCTCTGCGCTGAGCACGCTGGGCGGGAAGAGTAC
GATGATCTCGCGACTGGGGCAAATGTCCCGGTAGCTTCTCTGGTCCTATC
CACAAGCGAAGAAAGCATCGATTCTACTAGCGGGGCGGGTCTTGTTGGCG
CAGGTTCTGTCGATGACTCCAGTCTTGCTGAAAACACGAGTCGTACTGAA
ACCGAAAGCCCCGCCGACGATGTTGACAATATGGACTACGGCATCCATCT
CCGTCAGGGCCTCAGTCGATCGGAACGTCACCATCCTGGAGTCGAAACTG
AGGCGATCTGTCGCGTATCTCCTCCAGCGCCAGAGATTAAACGAGGCGGT
TCATTGTGGTCATCAGCTCGACCGCGTCAATCGCCACATGTGTCCCTCGT
GAAGCTGCGGGTCACCAGAAAATGGTCTTGGCCCAACAACCCACTTCTGC
AGACGCAAGACGGGTGGTCCAAGTGGAACTGGCAATCTGCACTCATCTCA
GCCTCTCGCGGTATAGACAGATCCACAACCGCGTAA
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