mRNA_H-elongata_contig66706.14273.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66706.14273.1
Unique NamemRNA_H-elongata_contig66706.14273.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: D8LNW5_ECTSI (Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW5_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.220e-35
Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 1
Query:    4 QVSLRFADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDFS 258
            +VSLRFADA TLD VLGVVQGAVSPLAVVND EG+A LAMDK +++A E+LVHPLRNDRSVR+ AADLVK+VT CGHAP VLDFS
Sbjct:  267 KVSLRFADAATLDSVLGVVQGAVSPLAVVNDVEGVARLAMDKSVMEAEEVLVHPLRNDRSVRIKAADLVKYVTACGHAPTVLDFS 351          
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: A0A835YT63_9STRA (Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT63_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.520e-21
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   10 SLRFADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDFS 258
            +LRFAD ETL  +LGV QG+V PLAV+ND+EG AT  +DK L  A  +  HPLRNDR+  ++A DL+ +   C H P +LDF+
Sbjct:  275 NLRFADEETLSAILGVKQGSVGPLAVLNDTEGQATFVLDKKLAQADIINSHPLRNDRTTAVSAKDLIAYANACNHPPTILDFA 357          
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: A0A2E4H0N0_9PROT (tRNA_edit domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4H0N0_9PROT)

HSP 1 Score: 85.9 bits (211), Expect = 3.030e-19
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 SQVSLRFADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDFS 258
            +Q +L F  +E+L+++LGVV GAV+PL+V+ND     T  +DK+L+DA  +  HPLRND +  L+A DL+ F+    H+P +LDFS
Sbjct:   83 AQGTLSFGSSESLNELLGVVPGAVTPLSVINDKGSAVTAFIDKELLDADLVNAHPLRNDMTTALSARDLITFMETVHHSPNILDFS 168          
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: A0A1V9YDF7_9STRA (Proline--tRNA ligase n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YDF7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.720e-18
Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 SQVSLRFADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDFS 258
            ++V+LRFA  + L   L V QG+VSPLAV+ND+EG   L +D+ L+ A ++  HPL+ND++V L  ADL+KFV   GH P ++DFS
Sbjct:   79 NKVNLRFASEDVLHDTLKVKQGSVSPLAVMNDTEGQVKLVLDETLLKAEKINCHPLQNDKTVSLTPADLLKFVRHYGHEPLIVDFS 164          
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: A0A7S3ANH3_9EUKA (Proline--tRNA ligase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ANH3_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 5.990e-18
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 1
Query:   10 SLRFADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDF 255
            + RFA AE L ++LGV QG+VSPLAV+ND+ G  TL +DK+L+ A+ + VHPLRND + +++  DL KFV+   H  KV+DF
Sbjct:   88 NFRFATAEVLQELLGVQQGSVSPLAVMNDTTGAVTLCIDKELMQANYVGVHPLRNDMTNQISPDDLTKFVSHFKHDAKVIDF 169          
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: W7TR23_9STRA (Proline--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR23_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 8.190e-18
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    4 QVSLRFADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDF 255
            + +LRFAD ETL+ +L V +GAVS LAV+ND+    TLAMDK L++   + +HPLRNDR+V +  A L++FV   GH P +LDF
Sbjct:  114 KANLRFADEETLEGLLKVKRGAVSALAVLNDTGNAVTLAMDKALMEQPIVNLHPLRNDRTVAIPTAALLQFVHAAGHEPTMLDF 197          
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: A0A0F5PUX7_9HYPH (Ala-tRNA(Pro) hydrolase n=1 Tax=Devosia psychrophila TaxID=728005 RepID=A0A0F5PUX7_9HYPH)

HSP 1 Score: 82.0 bits (201), Expect = 9.190e-18
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   19 FADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDF 255
            FA +ETL + LGV+QG+VSPLA++ND+     L + KD++    + VHPL N  +V L + +LVKFVT  GH+P ++DF
Sbjct:   85 FASSETLLEALGVIQGSVSPLALINDTANAVQLVLAKDMLAQPRITVHPLVNTATVSLTSDELVKFVTATGHSPDIVDF 163          
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: UPI0015F3C2C6 (prolyl-tRNA synthetase associated domain-containing protein n=1 Tax=Aureimonas sp. ME7 TaxID=2744252 RepID=UPI0015F3C2C6)

HSP 1 Score: 80.5 bits (197), Expect = 3.660e-17
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   19 FADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDF 255
            FA AETL + LGVVQG+VSPLA+VND     +L +DK ++    L VHPLRN  +V L +ADL++ V   GH  +++DF
Sbjct:   84 FASAETLLEALGVVQGSVSPLALVNDKAKAVSLVLDKRMLSHPRLTVHPLRNTATVSLASADLLRVVEATGHEAQIVDF 162          
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: A0A6N6TGD3_9GAMM (Prolyl-tRNA synthetase associated domain-containing protein n=1 Tax=Candidatus Contendobacter sp. TaxID=2651161 RepID=A0A6N6TGD3_9GAMM)

HSP 1 Score: 79.7 bits (195), Expect = 6.520e-17
Identity = 34/77 (44.16%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   19 FADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVL 249
            FA+ E L ++LGVV GAVSP A +ND++G A + +D+ ++DA  L  HPL+NDR+  +   DL++F+   GH P+++
Sbjct:   84 FANEEELGRILGVVPGAVSPFAAINDADGRACIVLDRRVLDADLLNCHPLQNDRTTTIATGDLLRFLEAVGHPPRII 160          
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Match: A0A433I4J6_9GAMM (Prolyl-tRNA synthetase associated domain-containing protein n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A433I4J6_9GAMM)

HSP 1 Score: 77.8 bits (190), Expect = 3.670e-16
Identity = 34/77 (44.16%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   19 FADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASELLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVL 249
            FA+AE LD++LGV  GAVSP A VND EG   + +++ ++D   L  HPLRNDR+  +   +L++F+   GH P+++
Sbjct:   84 FANAEALDRLLGVQPGAVSPFAAVNDVEGQVCVVLEQQVLDTERLNCHPLRNDRTTTIATTELLRFLDQIGHPPRII 160          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66706.14273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNW5_ECTSI1.220e-3580.00Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YT63_9STRA2.520e-2153.01Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
A0A2E4H0N0_9PROT3.030e-1946.51tRNA_edit domain-containing protein n=1 Tax=Rhodos... [more]
A0A1V9YDF7_9STRA1.720e-1850.00Proline--tRNA ligase n=2 Tax=Saprolegniaceae TaxID... [more]
A0A7S3ANH3_9EUKA5.990e-1852.44Proline--tRNA ligase n=1 Tax=Haptolina ericina Tax... [more]
W7TR23_9STRA8.190e-1852.38Proline--tRNA ligase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A0F5PUX7_9HYPH9.190e-1848.10Ala-tRNA(Pro) hydrolase n=1 Tax=Devosia psychrophi... [more]
UPI0015F3C2C63.660e-1750.63prolyl-tRNA synthetase associated domain-containin... [more]
A0A6N6TGD3_9GAMM6.520e-1744.16Prolyl-tRNA synthetase associated domain-containin... [more]
A0A433I4J6_9GAMM3.670e-1644.16Prolyl-tRNA synthetase associated domain-containin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66706contigH-elongata_contig66706:1310..2329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue2.9e-30
Seed eggNOG ortholog2880.D8LNW5
KEGG rclassRC00004,RC00049,RC00055,RC00069,RC00296,RC00523,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K01120,ko:K01194,ko:K01874,ko:K01881,ko:K15437,ko:K22119
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR00010,R00191,R01234,R03522,R03659,R03661,R04773,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00230,ko00450,ko00480,ko00500,ko00970,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00230,map00450,map00480,map00500,map00970,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
KEGG ModuleM00359,M00360
EggNOG free text desc.synthetase
EggNOG OGsCOG0442@1,COG0625@1,KOG0867@2759,KOG4163@2759
EC2.5.1.18,3.1.4.17,3.2.1.28,6.1.1.10,6.1.1.15
COG Functional cat.J
CAZyGH37
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00537,ko01000,ko01007,ko02000,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.0518112-CDS-H-elongata_contig66706:1309..15221622931057.0518112-CDS-H-elongata_contig66706:1309..1522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66706 1310..1522 +
1691679680.25286-CDS-H-elongata_contig66706:1309..15221691679680.25286-CDS-H-elongata_contig66706:1309..1522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66706 1310..1522 +
1622931057.0833685-CDS-H-elongata_contig66706:2284..23291622931057.0833685-CDS-H-elongata_contig66706:2284..2329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66706 2285..2329 +
1691679680.2701097-CDS-H-elongata_contig66706:2284..23291691679680.2701097-CDS-H-elongata_contig66706:2284..2329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66706 2285..2329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66706.14273.1prot_H-elongata_contig66706.14273.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66706 1310..2329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66706.14273.1

>prot_H-elongata_contig66706.14273.1 ID=prot_H-elongata_contig66706.14273.1|Name=mRNA_H-elongata_contig66706.14273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
SQVSLRFADAETLDKVLGVVQGAVSPLAVVNDSEGLATLAMDKDLVDASE
LLVHPLRNDRSVRLNAADLVKFVTVCGHAPKVLDFS
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mRNA from alignment at H-elongata_contig66706:1310..2329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66706.14273.1 ID=mRNA_H-elongata_contig66706.14273.1|Name=mRNA_H-elongata_contig66706.14273.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1020bp|location=Sequence derived from alignment at H-elongata_contig66706:1310..2329+ (Himanthalia elongata Himel1 dioecious)
TCTCAGGTATCGCTGCGCTTCGCCGACGCGGAAACCCTGGACAAGGTGCT TGGCGTCGTGCAGGGGGCGGTCAGTCCTCTGGCGGTTGTGAACGATTCCG AGGGGCTGGCCACGCTGGCGATGGACAAGGACCTCGTAGACGCCTCCGAG CTTCTGGTACACCCCCTCAGGAATGATCGGAGCGTCCGCCTCAATGCGGC GGATCTCGTCAAGGTCTGATCGGGTTTACAAGTTTTTGTTTTTTTTGCTG GGGGGGGCGGGGAGAGAGGAGGGGCATAGGGCAGCGAAATGGTTTTATGG TATGGTCGAGACAGCTTTCCAGCCAGTAGCTCGAGCGTACAGGAGGTGGT GTTTTAACCCTGCCCCCCCCCCTCCGCGGATGATCTTGATTTTGGTGGTA TCACCCTCCCTGCTTTTGTAACCGATCGAACCGGGAGTGTACAAGGTAGC CATTCTTATTGCGAAGGGAGTTCCCCGGCTGGCATCAAAATAAATAGTTG GGACACGCGGGAATTTGACCCACCCCCCGCGTCCTGCCCCTTTTTCTCGA AACCTTAACACACTTAACATTTGAGCCCAGAAATTCTCTACGAAACCTCT ACAGGGCCTAGGCGAAAACACTTGCGCAACCCTACGAAATAATCACACAT AATCACACACTATAATGTGCCTTCCTTTTTCTTGGGCGGCGATACCTAGA CAGACAGATCTCTAGGCAGACCTCTAGGCAGCCTCCTTGACATACCTATG TTGTCTCTTTCGCCTGCCGTGGTGCTCGCTCTCTCCGATCTCACTCCTCT ATCTTTGATCTCTCTCGCGCGCCTCCGCTGCCGTTGCGGTCTCTTGCCCG AGCCAATCTCTCTCCCGACGACGTCCTTTGATAACACCCCTCTTTCCCTG GATAATCCGAATCCCTCGACGCCGTTCGTTCGTCTCTTATGGATCCATGT CGTGCCGCCTCAATGAGAGTAATAGTTCGTGACGGTGTGCGGGCACGCCC CCAAGGTGCTAGACTTCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig66706:1310..2329+

>mRNA_H-elongata_contig66706.14273.1 ID=mRNA_H-elongata_contig66706.14273.1|Name=mRNA_H-elongata_contig66706.14273.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig66706:1310..2329+ (Himanthalia elongata Himel1 dioecious)
TCTCAGGTATCGCTGCGCTTCGCCGACGCGGAAACCCTGGACAAGGTGCT
TGGCGTCGTGCAGGGGGCGGTCAGTCCTCTGGCGGTTGTGAACGATTCCG
AGGGGCTGGCCACGCTGGCGATGGACAAGGACCTCGTAGACGCCTCCGAG
CTTCTGGTACACCCCCTCAGGAATGATCGGAGCGTCCGCCTCAATGCGGC
GGATCTCGTCAAGTCTCAGGTATCGCTGCGCTTCGCCGACGCGGAAACCC
TGGACAAGGTGCTTGGCGTCGTGCAGGGGGCGGTCAGTCCTCTGGCGGTT
GTGAACGATTCCGAGGGGCTGGCCACGCTGGCGATGGACAAGGACCTCGT
AGACGCCTCCGAGCTTCTGGTACACCCCCTCAGGAATGATCGGAGCGTCC
GCCTCAATGCGGCGGATCTCGTCAAGTTCGTGACGGTGTGCGGGCACGCC
CCCAAGGTGCTAGACTTCAGCTTCGTGACGGTGTGCGGGCACGCCCCCAA
GGTGCTAGACTTCAGC
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