mRNA_H-elongata_contig66678.14271.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66678.14271.1
Unique NamemRNA_H-elongata_contig66678.14271.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66678.14271.1 vs. uniprot
Match: D7FNG4_ECTSI (5-oxoprolinase (ATP-hydrolysing) 5-oxoprolinase (ATP-hydrolysing) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNG4_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 1.450e-49
Identity = 89/110 (80.91%), Postives = 94/110 (85.45%), Query Frame = 1
Query:    1 RRYPVILNSFGLRHGSGGRGARPGGDGVSREMTFRKPLTVSILSERRAFRPWGLAGGLPAERGVNFLHFREGD-----RTVSLGGKNTVHVKAGDRLTILTPGGGGHGSP 315
            RRYPVILNSFGLR GSGG GAR GGDGVSR MT RKPLTVS+LSERR+FRPWGLAGG PAERG+NFL FR G      R+VSLGGKNTV V AGDRLTILTPGGGGHG+P
Sbjct: 1157 RRYPVILNSFGLRRGSGGGGARRGGDGVSRSMTIRKPLTVSVLSERRSFRPWGLAGGQPAERGLNFLRFRGGGGGNSGRSVSLGGKNTVKVNAGDRLTILTPGGGGHGTP 1266          
BLAST of mRNA_H-elongata_contig66678.14271.1 vs. uniprot
Match: A0A835ZBL8_9STRA (Hydantoinase B/oxoprolinase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL8_9STRA)

HSP 1 Score: 141 bits (356), Expect = 6.770e-37
Identity = 71/105 (67.62%), Postives = 81/105 (77.14%), Query Frame = 1
Query:    1 RRYPVILNSFGLRHGSGGRGARPGGDGVSREMTFRKPLTVSILSERRAFRPWGLAGGLPAERGVNFLHFREGDRTVSLGGKNTVHVKAGDRLTILTPGGGGHGSP 315
            RRYP++L  F LR  SGG G   GGDGV RE+ FRK L VSILSERRAF+P+GL+GG P  RG N L +R G R +SLGGKNT+ VK GDRLTILTPGGGG+GSP
Sbjct: 1071 RRYPLLLLKFALRPDSGGTGQYKGGDGVERELMFRKDLVVSILSERRAFQPYGLSGGGPGARGKNLLRYRTG-RVISLGGKNTISVKEGDRLTILTPGGGGYGSP 1174          
BLAST of mRNA_H-elongata_contig66678.14271.1 vs. uniprot
Match: A0A6A5AQM1_9STRA (Hydantoinase_B domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AQM1_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.570e-36
Identity = 67/104 (64.42%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 RRYPVILNSFGLRHGSGGRGARPGGDGVSREMTFRKPLTVSILSERRAFRPWGLAGGLPAERGVNFLHFREGDRTVSLGGKNTVHVKAGDRLTILTPGGGGHGS 312
            +RYPV+LN+FGLR GSGG G   GG+GV RE+ F  P+TVSILSERRAF+P+GL GG P  RG N L + +G RT++LGGKNTV V AGD LTIL+PGGG +G+
Sbjct:  175 KRYPVLLNAFGLRQGSGGVGKFAGGEGVHRELKFLVPMTVSILSERRAFQPYGLYGGGPGARGHNLLTYTDG-RTINLGGKNTVEVLAGDVLTILSPGGGAYGA 277          
BLAST of mRNA_H-elongata_contig66678.14271.1 vs. uniprot
Match: A0A485KC88_9STRA (Aste57867_5034 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KC88_9STRA)

HSP 1 Score: 139 bits (351), Expect = 3.200e-36
Identity = 69/104 (66.35%), Postives = 85/104 (81.73%), Query Frame = 1
Query:    1 RRYPVILNSFGLRHGSGGRGARPGGDGVSREMTFRKPLTVSILSERRAFRPWGLAGGLPAERGVNFLHFREGDRTVSLGGKNTVHVKAGDRLTILTPGGGGHGS 312
            +RYPV+LN+FGLR GSGG G   GG+GV RE+ F  P+TVSILSERRAF+P+GLAGG P  RG N L + +G RT++LGGKNTV V+AGD LTIL+PGGGG+G+
Sbjct: 1170 KRYPVLLNAFGLRTGSGGAGTFVGGEGVHRELKFLVPMTVSILSERRAFQPYGLAGGGPGARGHNLLTYTDG-RTINLGGKNTVEVEAGDVLTILSPGGGGYGN 1272          
BLAST of mRNA_H-elongata_contig66678.14271.1 vs. uniprot
Match: A0A6G0XPH5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPH5_9STRA)

HSP 1 Score: 139 bits (349), Expect = 5.960e-36
Identity = 69/104 (66.35%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    1 RRYPVILNSFGLRHGSGGRGARPGGDGVSREMTFRKPLTVSILSERRAFRPWGLAGGLPAERGVNFLHFREGDRTVSLGGKNTVHVKAGDRLTILTPGGGGHGS 312
            +RYPVILN+FGLR GSGG G   GG+GV RE+ F  P+TVSILSERRAF+P+GLAGG P  RG N L + +G RT++LGGKNTV V+AGD L IL+PGGGG+G+
Sbjct: 1171 KRYPVILNTFGLRQGSGGSGKFVGGEGVHRELKFLVPMTVSILSERRAFQPYGLAGGGPGARGHNLLTYTDG-RTINLGGKNTVEVQAGDVLAILSPGGGGYGA 1273          
BLAST of mRNA_H-elongata_contig66678.14271.1 vs. uniprot
Match: A0A1S3K6G8_LINUN (5-oxoprolinase-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K6G8_LINUN)

HSP 1 Score: 131 bits (330), Expect = 8.040e-36
Identity = 65/105 (61.90%), Postives = 78/105 (74.29%), Query Frame = 1
Query:    1 RRYPVILNSFGLRHGSGGRGARPGGDGVSREMTFRKPLTVSILSERRAFRPWGLAGGLPAERGVNFLHFREGDRTVSLGGKNTVHVKAGDRLTILTPGGGGHGSP 315
            +RYPV+LN F L HGSGGRG   GGDGV RE+ FRK LT+SIL+ERR FRP+GL GG   +RG+N L   + DR V+LG K +V V AGDR  +LTPGGGG+G P
Sbjct:  113 KRYPVVLNCFSLNHGSGGRGKYSGGDGVMRELLFRKRLTLSILTERRVFRPYGLFGGEAGQRGLNLLIHAD-DRVVNLGSKCSVTVSAGDRFRLLTPGGGGYGDP 216          
BLAST of mRNA_H-elongata_contig66678.14271.1 vs. uniprot
Match: A0A024US56_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024US56_9STRA)

HSP 1 Score: 135 bits (340), Expect = 9.760e-35
Identity = 68/105 (64.76%), Postives = 82/105 (78.10%), Query Frame = 1
Query:    1 RRYPVILNSFGLRHGSGGRGARPGGDGVSREMTFRKPLTVSILSERRAFRPWGLAGGLPAERGVNFLHFREGDRTVSLGGKNTVHVKAGDRLTILTPGGGGHGSP 315
            +RYPV+LN+FGLR GSGG G   GG+GV RE+ F  P+TVSILSERRAF+P+GL GG P  RG N L + +G RTV+LGGKNTV V  GD LTIL+PGGG +G+P
Sbjct: 1172 KRYPVLLNAFGLRSGSGGVGKFAGGEGVHRELKFMAPMTVSILSERRAFQPYGLLGGGPGARGHNLLTYSDG-RTVNLGGKNTVEVVPGDVLTILSPGGGAYGAP 1275          
BLAST of mRNA_H-elongata_contig66678.14271.1 vs. uniprot
Match: A0A7S3H7L0_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H7L0_9STRA)

HSP 1 Score: 135 bits (340), Expect = 9.770e-35
Identity = 65/104 (62.50%), Postives = 77/104 (74.04%), Query Frame = 1
Query:    1 RRYPVILNSFGLRHGSGGRGARPGGDGVSREMTFRKPLTVSILSERRAFRPWGLAGGLPAERGVNFLHFREGDRTVSLGGKNTVHVKAGDRLTILTPGGGGHGS 312
            +RYP+IL  F LR GSGG+G   GG+GV RE+ F KPL VSILSERRAFRP+GLAGG    RG+N L F +  R +SLGGKNT+ V  GD L I +PGGGG+GS
Sbjct: 1182 KRYPIILRQFALREGSGGKGQFNGGEGVVRELQFTKPLVVSILSERRAFRPYGLAGGEDGHRGMNLLRFAQDQRVISLGGKNTISVSTGDCLLIHSPGGGGYGS 1285          
BLAST of mRNA_H-elongata_contig66678.14271.1 vs. uniprot
Match: UPI0003F0CF60 (5-oxoprolinase-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0CF60)

HSP 1 Score: 128 bits (322), Expect = 9.980e-35
Identity = 61/105 (58.10%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 RRYPVILNSFGLRHGSGGRGARPGGDGVSREMTFRKPLTVSILSERRAFRPWGLAGGLPAERGVNFLHFREGDRTVSLGGKNTVHVKAGDRLTILTPGGGGHGSP 315
            RRYP++L  F L  GSGG+G   GGDGV REM FR+PLT+S+L+ERRAF+P+G+ GG P +RG N+L  + G   VSLGGK +++VK GD   +LTPGGGG+G+P
Sbjct:  112 RRYPIVLQCFKLNLGSGGQGQFRGGDGVQREMLFRRPLTLSVLTERRAFQPYGMNGGEPGQRGKNYLIHKNG-HVVSLGGKTSLNVKPGDVFQLLTPGGGGYGAP 215          
BLAST of mRNA_H-elongata_contig66678.14271.1 vs. uniprot
Match: A0A197JBU9_9FUNG (Hydantoinase B/oxoprolinase (Fragment) n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JBU9_9FUNG)

HSP 1 Score: 122 bits (306), Expect = 6.090e-34
Identity = 63/103 (61.17%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    1 RRYPVILNSFGLRHGSGGRGARPGGDGVSREMTFRKPLTVSILSERRAFRPWGLAGGLPAERGVNFLHFREGDRTVSLGGKNTVHVKAGDRLTILTPGGGGHG 309
            RRYPVIL  F LR GSGG G  PGG+G+ R++ F +P+ VSILSERR F+P+G+AGG P   G N L      RTV+L GKNT HVKAGDRL I TPGGG  G
Sbjct:   15 RRYPVILREFALRAGSGGEGLHPGGEGLVRDIEFLEPMEVSILSERRVFQPYGMAGGGPGASGKN-LWTETIFRTVNLSGKNTAHVKAGDRLLICTPGGGAWG 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66678.14271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNG4_ECTSI1.450e-4980.915-oxoprolinase (ATP-hydrolysing) 5-oxoprolinase (A... [more]
A0A835ZBL8_9STRA6.770e-3767.62Hydantoinase B/oxoprolinase-domain-containing prot... [more]
A0A6A5AQM1_9STRA1.570e-3664.42Hydantoinase_B domain-containing protein n=1 Tax=A... [more]
A0A485KC88_9STRA3.200e-3666.35Aste57867_5034 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0XPH5_9STRA5.960e-3666.35Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1S3K6G8_LINUN8.040e-3661.905-oxoprolinase-like n=1 Tax=Lingula unguis TaxID=7... [more]
A0A024US56_9STRA9.760e-3564.76Uncharacterized protein n=7 Tax=Aphanomyces TaxID=... [more]
A0A7S3H7L0_9STRA9.770e-3562.50Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
UPI0003F0CF609.980e-3558.105-oxoprolinase-like n=1 Tax=Saccoglossus kowalevsk... [more]
A0A197JBU9_9FUNG6.090e-3461.17Hydantoinase B/oxoprolinase (Fragment) n=1 Tax=Lin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66678contigH-elongata_contig66678:2545..3140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.6
Seed ortholog evalue1.2e-41
Seed eggNOG ortholog2880.D7FNG4
KEGG rclassRC00553
KEGG koko:K01469
KEGG ReactionR00251
KEGG Pathwayko00480,map00480
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0017168,GO:0034641,GO:0042221,GO:0043603,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0051716,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:1901564,GO:1990748
EggNOG free text desc.5-oxoprolinase (ATP-hydrolyzing) activity
EggNOG OGsCOG0145@1,KOG1939@2759
EC3.5.2.9
COG Functional cat.EQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931056.9412754-CDS-H-elongata_contig66678:2544..26731622931056.9412754-CDS-H-elongata_contig66678:2544..2673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66678 2545..2673 -
1691679680.218767-CDS-H-elongata_contig66678:2544..26731691679680.218767-CDS-H-elongata_contig66678:2544..2673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66678 2545..2673 -
1622931056.9588945-CDS-H-elongata_contig66678:2951..31401622931056.9588945-CDS-H-elongata_contig66678:2951..3140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66678 2952..3140 -
1691679680.2287834-CDS-H-elongata_contig66678:2951..31401691679680.2287834-CDS-H-elongata_contig66678:2951..3140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66678 2952..3140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66678.14271.1prot_H-elongata_contig66678.14271.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66678 2545..3140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66678.14271.1

>prot_H-elongata_contig66678.14271.1 ID=prot_H-elongata_contig66678.14271.1|Name=mRNA_H-elongata_contig66678.14271.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
RRYPVILNSFGLRHGSGGRGARPGGDGVSREMTFRKPLTVSILSERRAFR
PWGLAGGLPAERGVNFLHFREGDRTVSLGGKNTVHVKAGDRLTILTPGGG
GHGSPP
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mRNA from alignment at H-elongata_contig66678:2545..3140-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66678.14271.1 ID=mRNA_H-elongata_contig66678.14271.1|Name=mRNA_H-elongata_contig66678.14271.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=596bp|location=Sequence derived from alignment at H-elongata_contig66678:2545..3140- (Himanthalia elongata Himel1 dioecious)
CGCAGGTATCCCGTCATCCTGAACTCGTTTGGGCTTCGCCATGGCTCCGG TGGCCGGGGCGCGAGGCCCGGTGGCGACGGCGTATCCCGCGAGATGACTT TCCGGAAGCCACTCACGGTCAGCATTCTCTCCGAGCGGCGCGCCTTCCGG CCTTGGGGCCTGGCAGGAGGGCTACCGGCAGAAAGAGGGGTGCGTGCGCT GTGTTCCGTTTCTTCGGGTGAAACCGTAAGGGCTGCTTCGTAGCATGCGA GAGGATGGATGGTTGGCTACCTTATATGCACCGCATTAAACACGCCTTCC AACCCTCCTTCCCAACCAAAGTTTAGAGTACCATCGTCCCACACGAGAAC CGCTTTGTGGGGTCCTGCGGTCTACCCCGTTTGCCCGTCCACCCCCCGTT CTATATATTCTCCGCCGATAACCCGAACGTTTGAGCGAAATAACGAACGG ACAAATGAACAACGCAGGTTAACTTCCTGCACTTTCGCGAGGGCGATCGC ACGGTTAGCCTAGGTGGCAAGAACACCGTTCACGTAAAAGCCGGTGATCG CCTGACTATTCTAACTCCGGGTGGTGGGGGACACGGCAGCCCGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig66678:2545..3140-

>mRNA_H-elongata_contig66678.14271.1 ID=mRNA_H-elongata_contig66678.14271.1|Name=mRNA_H-elongata_contig66678.14271.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig66678:2545..3140- (Himanthalia elongata Himel1 dioecious)
CGCAGGTATCCCGTCATCCTGAACTCGTTTGGGCTTCGCCATGGCTCCGG
TGGCCGGGGCGCGAGGCCCGGTGGCGACGGCGTATCCCGCGAGATGACTT
TCCGGAAGCCACTCACGGTCAGCATTCTCTCCGAGCGGCGCGCCTTCCGG
CCTTGGGGCCTGGCAGGAGGGCTACCGGCAGAAAGAGGGCGCAGGTATCC
CGTCATCCTGAACTCGTTTGGGCTTCGCCATGGCTCCGGTGGCCGGGGCG
CGAGGCCCGGTGGCGACGGCGTATCCCGCGAGATGACTTTCCGGAAGCCA
CTCACGGTCAGCATTCTCTCCGAGCGGCGCGCCTTCCGGCCTTGGGGCCT
GGCAGGAGGGCTACCGGCAGAAAGAGGGGTTAACTTCCTGCACTTTCGCG
AGGGCGATCGCACGGTTAGCCTAGGTGGCAAGAACACCGTTCACGTAAAA
GCCGGTGATCGCCTGACTATTCTAACTCCGGGTGGTGGGGGACACGGCAG
CCCGCCCGTTAACTTCCTGCACTTTCGCGAGGGCGATCGCACGGTTAGCC
TAGGTGGCAAGAACACCGTTCACGTAAAAGCCGGTGATCGCCTGACTATT
CTAACTCCGGGTGGTGGGGGACACGGCAGCCCGCCC
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