mRNA_H-elongata_contig66592.14264.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66592.14264.1
Unique NamemRNA_H-elongata_contig66592.14264.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig66592.14264.1 vs. uniprot
Match: A0A225UWJ7_9STRA (Reverse transcriptase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UWJ7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.290e-8
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:    1 IQPIRQHVTGKRFALVTDNSAF----TFRNLDLKLYRWALNLQEFDVYLRLQAGCANLGPNCLVRLPYPAQNQTPVD 219
            I+  R ++ G+RF LVTDNSA     T  NL  KL+RWAL LQE++  ++ + G  N+  + L R P  A  QT V+
Sbjct:   27 IKMFRPYLYGRRFTLVTDNSALKWLMTSPNLTGKLHRWALVLQEYEFEVQYRPGSQNVVADALSRAPVTASVQTAVE 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66592.14264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A225UWJ7_9STRA9.290e-842.86Reverse transcriptase n=1 Tax=Phytophthora megakar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66592contigH-elongata_contig66592:2812..3042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931056.0433178-CDS-H-elongata_contig66592:2811..28821622931056.0433178-CDS-H-elongata_contig66592:2811..2882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66592 2812..2882 +
1691679679.980322-CDS-H-elongata_contig66592:2811..28821691679679.980322-CDS-H-elongata_contig66592:2811..2882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66592 2812..2882 +
1622931056.0648375-CDS-H-elongata_contig66592:2894..30421622931056.0648375-CDS-H-elongata_contig66592:2894..3042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66592 2895..3042 +
1691679679.9887486-CDS-H-elongata_contig66592:2894..30421691679679.9887486-CDS-H-elongata_contig66592:2894..3042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66592 2895..3042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66592.14264.1prot_H-elongata_contig66592.14264.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66592 2812..3042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66592.14264.1

>prot_H-elongata_contig66592.14264.1 ID=prot_H-elongata_contig66592.14264.1|Name=mRNA_H-elongata_contig66592.14264.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
IQPIRQHVTGKRFALVTDNSAFTFRNLDLKLYRWALNLQEFDVYLRLQAG
CANLGPNCLVRLPYPAQNQTPVD
back to top

mRNA from alignment at H-elongata_contig66592:2812..3042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66592.14264.1 ID=mRNA_H-elongata_contig66592.14264.1|Name=mRNA_H-elongata_contig66592.14264.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig66592:2812..3042+ (Himanthalia elongata Himel1 dioecious)
ATACAGCCCATTAGACAGCACGTGACAGGTAAACGTTTCGCCCTTGTGAC
GGACAATTCAGCATTTACTTTGTAGTTTCGTAGCCGCAATCTCGACCTGA
AATTGTACCGATGGGCGCTAAACCTACAAGAATTCGATGTTTATTTACGA
TTGCAAGCGGGTTGCGCAAACCTTGGCCCCAACTGCCTTGTGAGACTACC
ATACCCAGCACAAAACCAAACCCCCGTCGAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig66592:2812..3042+

>mRNA_H-elongata_contig66592.14264.1 ID=mRNA_H-elongata_contig66592.14264.1|Name=mRNA_H-elongata_contig66592.14264.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig66592:2812..3042+ (Himanthalia elongata Himel1 dioecious)
ATACAGCCCATTAGACAGCACGTGACAGGTAAACGTTTCGCCCTTGTGAC
GGACAATTCAGCATTTACTTTATACAGCCCATTAGACAGCACGTGACAGG
TAAACGTTTCGCCCTTGTGACGGACAATTCAGCATTTACTTTCCGCAATC
TCGACCTGAAATTGTACCGATGGGCGCTAAACCTACAAGAATTCGATGTT
TATTTACGATTGCAAGCGGGTTGCGCAAACCTTGGCCCCAACTGCCTTGT
GAGACTACCATACCCAGCACAAAACCAAACCCCCGTCGATCCGCAATCTC
GACCTGAAATTGTACCGATGGGCGCTAAACCTACAAGAATTCGATGTTTA
TTTACGATTGCAAGCGGGTTGCGCAAACCTTGGCCCCAACTGCCTTGTGA
GACTACCATACCCAGCACAAAACCAAACCCCCGTCGAT
back to top