mRNA_H-elongata_contig66561.14261.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66561.14261.1
Unique NamemRNA_H-elongata_contig66561.14261.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66561.14261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66561contigH-elongata_contig66561:470..1121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size507
Cds size375
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66561.14261.1prot_H-elongata_contig66561.14261.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66561 470..989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931055.819239-CDS-H-elongata_contig66561:469..5161622931055.819239-CDS-H-elongata_contig66561:469..516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66561 470..516 -
1691679679.908016-CDS-H-elongata_contig66561:469..5161691679679.908016-CDS-H-elongata_contig66561:469..516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66561 470..516 -
1622931055.8334718-CDS-H-elongata_contig66561:661..9891622931055.8334718-CDS-H-elongata_contig66561:661..989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66561 662..989 -
1691679679.9246366-CDS-H-elongata_contig66561:661..9891691679679.9246366-CDS-H-elongata_contig66561:661..989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66561 662..989 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931055.8609655-UTR-H-elongata_contig66561:989..11211622931055.8609655-UTR-H-elongata_contig66561:989..1121Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66561 990..1121 -
1691679679.9323907-UTR-H-elongata_contig66561:989..11211691679679.9323907-UTR-H-elongata_contig66561:989..1121Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66561 990..1121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66561.14261.1

>prot_H-elongata_contig66561.14261.1 ID=prot_H-elongata_contig66561.14261.1|Name=mRNA_H-elongata_contig66561.14261.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MNRNVDMLGATNGSEGDERIDQLEGKVDQLVDLMRRLLAQKEEPGAVAVD
DAREGGGSALGRGNCGTAPNGQDTNTLPWASVFPGNMDFPETIGPGGRLS
GETRGFTPQGGCHRDEVVCELWDVG
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mRNA from alignment at H-elongata_contig66561:470..1121-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66561.14261.1 ID=mRNA_H-elongata_contig66561.14261.1|Name=mRNA_H-elongata_contig66561.14261.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=652bp|location=Sequence derived from alignment at H-elongata_contig66561:470..1121- (Himanthalia elongata Himel1 dioecious)
CTCGTTCTCCCTGTCTTGGAGCGAGTGGGTCTCCCTCTGCGACGTTAATG
TAAGCATATACATATGTCTCACCGTGGTAAATAAGCAATATATGAACATA
CTAGTGTGATCCCTAGGGAATTGCATCACGGGATGAATAGAAATGTAGAC
ATGCTTGGCGCAACCAACGGGAGTGAAGGCGACGAGAGAATCGATCAACT
GGAAGGAAAGGTCGATCAGCTGGTAGACTTGATGAGAAGGCTGCTAGCGC
AGAAGGAGGAGCCTGGTGCTGTCGCGGTTGACGACGCCAGAGAGGGCGGT
GGGTCCGCCCTCGGCAGAGGAAATTGTGGAACGGCTCCCAATGGCCAAGA
TACGAATACGCTACCTTGGGCCAGCGTATTTCCGGGGAACATGGATTTTC
CAGAGACGATCGGGCCGGGTGGTCGGCTCAGTGGGGAAACAAGGGGGTTT
ACCCCCCAAGGTGAGAGTACCCGCGTACAAAAGAACGGAGCGCTCCTTGA
TGGTTTTGAATCGCACCACAAACGGGGAAAAACACCGACCCTCCGTCCTT
TAGCCTCAACTCTAACCCGTCCTCGTCACCCTTGTATGTGTGACCTTCTT
GGCAGGGGGCTGTCACAGAGATGAGGTTGTATGCGAGTTGTGGGACGTGG
GC
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Coding sequence (CDS) from alignment at H-elongata_contig66561:470..1121-

>mRNA_H-elongata_contig66561.14261.1 ID=mRNA_H-elongata_contig66561.14261.1|Name=mRNA_H-elongata_contig66561.14261.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig66561:470..1121- (Himanthalia elongata Himel1 dioecious)
ATGAATAGAAATGTAGACATGCTTGGCGCAACCAACGGGAGTGAAGGCGA
CGAGAGAATCGATCAACTGGAAGGAAAGGTCGATCAGCTGGTAGACTTGA
TGAGAAGGCTGCTAGCGCAGAAGGAGGAGCCTGGTGCTGTCGCGGTTGAC
GACGCCAGAGAGGGCGGTGGGTCCGCCCTCGGCAGAGGAAATTGTGGAAC
GGCTCCCAATGGCCAAGATACGAATACGCTACCTTGGGCCAGCGTATTTC
CGGGGAACATGGATTTTCCAGAGACGATCGGGCCGGGTGGTCGGCTCAGT
GGGGAAACAAGGGGGTTTACCCCCCAAGATGAATAGAAATGTAGACATGC
TTGGCGCAACCAACGGGAGTGAAGGCGACGAGAGAATCGATCAACTGGAA
GGAAAGGTCGATCAGCTGGTAGACTTGATGAGAAGGCTGCTAGCGCAGAA
GGAGGAGCCTGGTGCTGTCGCGGTTGACGACGCCAGAGAGGGCGGTGGGT
CCGCCCTCGGCAGAGGAAATTGTGGAACGGCTCCCAATGGCCAAGATACG
AATACGCTACCTTGGGCCAGCGTATTTCCGGGGAACATGGATTTTCCAGA
GACGATCGGGCCGGGTGGTCGGCTCAGTGGGGAAACAAGGGGGTTTACCC
CCCAAGGGGGCTGTCACAGAGATGAGGTTGTATGCGAGTTGTGGGACGTG
GGCGGGGCTGTCACAGAGATGAGGTTGTATGCGAGTTGTGGGACGTGGGC
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