mRNA_H-elongata_contig66536.14253.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66536.14253.1
Unique NamemRNA_H-elongata_contig66536.14253.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66536.14253.1 vs. uniprot
Match: D8LB02_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB02_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 1.300e-123
Identity = 179/199 (89.95%), Postives = 189/199 (94.97%), Query Frame = 1
Query:    1 KVMQKNRIRTIADVKRVSREIKILKRVRHPNVIALYEVLDTPSAIYFMMEHCDGGELFDYIVRHQRLQEGQACFFFRQLVDGIDYLHNHYVTHRDLKPENLLLQSAPDGWQLKIIDFGLSNTHEGDKLLQTACGSPCYAAPEMIAGRSYRGPAVDIWSCGVVLFTLVAGFLPFEDPNTSALYKKILSGSYELPRWLSDG 597
            KV++K+RI+TIADVKRVSREIKILKRVRHPNVIALYEV+DTPS IYFMMEHCDGGELFDYIVRHQRLQEGQACFFFRQLVDGI+YLH H VTHRDLKPENLLLQS+ DGW+LKIIDFGLSNTHEG KLLQTACGSPCYAAPEMIAG  Y+GPA DIWSCGVVLFTLVAGFLPFEDPNTSALYKKILSGSYE P WLS+G
Sbjct:   78 KVLEKSRIKTIADVKRVSREIKILKRVRHPNVIALYEVMDTPSTIYFMMEHCDGGELFDYIVRHQRLQEGQACFFFRQLVDGIEYLHKHDVTHRDLKPENLLLQSSDDGWRLKIIDFGLSNTHEGGKLLQTACGSPCYAAPEMIAGERYQGPAADIWSCGVVLFTLVAGFLPFEDPNTSALYKKILSGSYEKPNWLSEG 276          
BLAST of mRNA_H-elongata_contig66536.14253.1 vs. uniprot
Match: A0A835YLZ1_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLZ1_9STRA)

HSP 1 Score: 303 bits (775), Expect = 1.180e-95
Identity = 142/200 (71.00%), Postives = 172/200 (86.00%), Query Frame = 1
Query:    1 KVMQKNRIRTIADVKRVSREIKILKRVRHPNVIALYEVLDTPSAIYFMMEHCDGGELFDYIVRHQRLQEGQACFFFRQLVDGIDYLHNHYVTHRDLKPENLLLQSAPDGWQLKIIDFGLSNTHEGDKLLQTACGSPCYAAPEMIAGR---SYRGPAVDIWSCGVVLFTLVAGFLPFEDPNTSALYKKILSGSYELPRWLS 591
            KV++K+RI+++ADVKRVSREIK LKRVRH  V+ LYEV+DTP++I+F+ E CDGGELFDYIVRHQRLQE +A  FFRQLVDG+ YLH+  +THRDLKPEN+L+QS+  GW+LKIIDFGLSN +E  ++LQTACGSPCYAAPEMIAG+   +Y GP  DIWS GVVLFTLVAGFLPFED NT+ LYKKIL+G+Y  P+W+S
Sbjct:   79 KVLEKSRIKSVADVKRVSREIKFLKRVRHEAVVQLYEVIDTPTSIFFITEFCDGGELFDYIVRHQRLQEPEAAGFFRQLVDGVSYLHSQGITHRDLKPENILMQSSRHGWRLKIIDFGLSNANEEGRMLQTACGSPCYAAPEMIAGKCCKAYVGPMADIWSMGVVLFTLVAGFLPFEDANTATLYKKILAGAYLCPQWVS 278          
BLAST of mRNA_H-elongata_contig66536.14253.1 vs. uniprot
Match: A0A7S1XXR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXR5_9STRA)

HSP 1 Score: 289 bits (740), Expect = 1.260e-94
Identity = 137/200 (68.50%), Postives = 161/200 (80.50%), Query Frame = 1
Query:    1 KVMQKNRIRTIADVKRVSREIKILKRVRHPNVIALYEVLDTPSAIYFMMEHCDGGELFDYIVRHQRLQEGQACFFFRQLVDGIDYLHNHYVTHRDLKPENLLLQSAPDGWQL-KIIDFGLSNTHEGDKLLQTACGSPCYAAPEMIAGRSYRGPAVDIWSCGVVLFTLVAGFLPFEDPNTSALYKKILSGSYELPRWLSDG 597
            K+++K+RI   ADV+RV+REI+ILKR RH N+I L+EVLD+PSAIY +MEH D GE++DYIV   ++ E +AC F  Q++DG DYLHN  VTHRDLKPENLLLQ+AP G  L KI+DFGLSNTHEG +LLQTACGSPCYAAPEMIAG  Y GP VDIWS GVVLF LV G+LPFED NTS LYKKIL+G Y  P+W S G
Sbjct:   72 KILEKSRIAETADVRRVTREIRILKRNRHRNIIKLHEVLDSPSAIYLIMEHADSGEMYDYIVEKGKIAESEACRFLHQIIDGADYLHNMDVTHRDLKPENLLLQAAPGGHHLIKIVDFGLSNTHEGGRLLQTACGSPCYAAPEMIAGHRYVGPKVDIWSVGVVLFALVCGYLPFEDANTSVLYKKILAGRYRFPKWPSGG 271          
BLAST of mRNA_H-elongata_contig66536.14253.1 vs. uniprot
Match: A0A7S3YB70_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YB70_HETAK)

HSP 1 Score: 291 bits (746), Expect = 1.480e-94
Identity = 134/197 (68.02%), Postives = 163/197 (82.74%), Query Frame = 1
Query:    1 KVMQKNRIRTIADVKRVSREIKILKRVRHPNVIALYEVLDTPSAIYFMMEHCDGGELFDYIVRHQRLQEGQACFFFRQLVDGIDYLHNHYVTHRDLKPENLLLQSAPDGWQLKIIDFGLSNTHEGDKLLQTACGSPCYAAPEMIAGRSYRGPAVDIWSCGVVLFTLVAGFLPFEDPNTSALYKKILSGSYELPRWLS 591
            KV+++ R++  ADV RV+REIKILKR  HPNVI LYEVLD+ +AIY +MEH DGGELFDYIV HQRLQE QACFFF Q+ DG++YLH   VTHRDLKPENLLLQS+P GW +KI+DFGLSNTH+G +LL TACGSPCYAAPEMIAG+ Y GP  D+WS GVVL+ +V G+LPFE+  T+ LY+KIL+G Y+ P ++S
Sbjct:   88 KVLERARMKEAADVTRVTREIKILKRNIHPNVIQLYEVLDSSTAIYLIMEHIDGGELFDYIVSHQRLQEPQACFFFHQICDGLEYLHRMEVTHRDLKPENLLLQSSPKGWLIKIVDFGLSNTHDGGRLLATACGSPCYAAPEMIAGKKYVGPKADMWSLGVVLYAMVCGYLPFEESTTAKLYQKILAGDYKAPSFIS 284          
BLAST of mRNA_H-elongata_contig66536.14253.1 vs. uniprot
Match: F0YLG1_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLG1_AURAN)

HSP 1 Score: 281 bits (719), Expect = 8.700e-93
Identity = 129/197 (65.48%), Postives = 163/197 (82.74%), Query Frame = 1
Query:    1 KVMQKNRIRTIADVKRVSREIKILKRVRHPNVIALYEVLDTPSAIYFMMEHCDGGELFDYIVRHQRLQEGQACFFFRQLVDGIDYLHNHYVTHRDLKPENLLLQSAPDGWQLKIIDFGLSNTHEGDKLLQTACGSPCYAAPEMIAGRSYRGPAVDIWSCGVVLFTLVAGFLPFEDPNTSALYKKILSGSYELPRWLS 591
            KV++K+R+   ADV+RV+REIKILKR RH N+I L+EVLDTP+AIY +ME+ D GE+F+YIVR++R++E QAC FF Q++DG +YLH+  VTHRDLKPENLLLQS+  G  +KI+DFGLSNTH+G  LLQTACGSPCYAAPEMIAG  Y GP  D+WS GV+L+ LV G+LPFED NT+ LYKKI++G+Y  P W+S
Sbjct:   81 KVLEKSRLVEAADVQRVAREIKILKRNRHQNIIQLFEVLDTPTAIYLIMENADAGEMFNYIVRNKRVEELQACRFFHQIIDGAEYLHDMEVTHRDLKPENLLLQSSTHGLLVKIVDFGLSNTHDGGTLLQTACGSPCYAAPEMIAGLRYWGPKADVWSMGVILYALVCGYLPFEDSNTATLYKKIMAGTYTCPSWIS 277          
BLAST of mRNA_H-elongata_contig66536.14253.1 vs. uniprot
Match: F0YIP5_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIP5_AURAN)

HSP 1 Score: 280 bits (717), Expect = 1.810e-92
Identity = 129/197 (65.48%), Postives = 160/197 (81.22%), Query Frame = 1
Query:    1 KVMQKNRIRTIADVKRVSREIKILKRVRHPNVIALYEVLDTPSAIYFMMEHCDGGELFDYIVRHQRLQEGQACFFFRQLVDGIDYLHNHYVTHRDLKPENLLLQSAPDGWQLKIIDFGLSNTHEGDKLLQTACGSPCYAAPEMIAGRSYRGPAVDIWSCGVVLFTLVAGFLPFEDPNTSALYKKILSGSYELPRWLS 591
            K+++K+R+   ADV+RV+REIKILKR RH N+I L+EVLDTP+AIY +ME+ D GE+F+YIV+H+R+ E +AC FF Q++DG +YLH   VTHRDLKPENLLLQ++  G  +KI+DFGLSNTH+G  LLQTACGSPCYAAPEMIAG  Y GP  DIWS GV+L+ LV G+LPFED NTS LYKKI+SG Y  P W+S
Sbjct:   82 KILEKSRLVEAADVQRVAREIKILKRNRHRNIIQLFEVLDTPTAIYLIMENADAGEMFNYIVQHKRVDEIEACRFFHQIMDGAEYLHEMEVTHRDLKPENLLLQNSKQGLLVKIVDFGLSNTHDGGSLLQTACGSPCYAAPEMIAGLKYWGPKADIWSMGVILYALVCGYLPFEDSNTSILYKKIMSGIYSCPNWIS 278          
BLAST of mRNA_H-elongata_contig66536.14253.1 vs. uniprot
Match: W7TTT1_9STRA (Protein kinase domain containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTT1_9STRA)

HSP 1 Score: 274 bits (700), Expect = 1.600e-88
Identity = 132/202 (65.35%), Postives = 157/202 (77.72%), Query Frame = 1
Query:    1 KVMQKNRIRTIADVKRVSREIKILKRVRHPNVIALYEVLDTPSAIYFMMEHCDGGELFDYIVRHQRLQEGQACFFFRQLVDGIDYLHNHYVTHRDLKPENLLLQS---APDGWQLKIIDFGLSNTHEGDKLLQTACGSPCYAAPEMIAGRSYRGPAVDIWSCGVVLFTLVAGFLPFEDPNTSALYKKILSGSYELPRWLSDG 597
            K+++KNRI    DV+RV+REI ILKR RH N+I LY+VLDTP+ IY +ME+ DGGELFDYIV+ QR+ E +A  FF+QLVDG+ YLH   VTHRDLKPENLLLQS   AP GW +KIIDFGLSNTHE   LL TACGSPCYA PEMI G +YRGPA D+WS GV+L+ +V G+LPFE  N S LY KIL+G Y +P +LS G
Sbjct:   36 KLLEKNRIVDAGDVRRVTREIDILKRNRHRNIIQLYDVLDTPARIYLVMENADGGELFDYIVKRQRVPEPEASAFFKQLVDGVGYLHAMEVTHRDLKPENLLLQSSKSAPGGWCVKIIDFGLSNTHEAGTLLSTACGSPCYACPEMIRGLAYRGPAADVWSMGVILYAMVCGYLPFEHTNISKLYHKILAGRYTVPSFLSPG 237          
BLAST of mRNA_H-elongata_contig66536.14253.1 vs. uniprot
Match: A0A3R7GSN4_9STRA (Protein kinase domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GSN4_9STRA)

HSP 1 Score: 270 bits (691), Expect = 3.480e-88
Identity = 130/212 (61.32%), Postives = 160/212 (75.47%), Query Frame = 1
Query:    1 KVMQKNRIRTIADVKRVSREIKILKRVRHPNVIALYEVLDTPSAIYFMMEHCDGGELFDYIVRHQRLQEGQACFFFRQLVDGIDYLHNHYVTHRDLKPENLLLQS---------------APDGWQLKIIDFGLSNTHEGDKLLQTACGSPCYAAPEMIAGRSYRGPAVDIWSCGVVLFTLVAGFLPFEDPNTSALYKKILSGSYELPRWLS 591
            K+++K RI  +ADV+RV+REIKILKR RH NVI LYEV+D+P  I+ +MEH DGGE+F+YIV H R++E +A F FRQ+VDG+ YLH + VTHRDLKPENLLLQS                     +KI+DFGLSNTH+G +LL+TACGSPCYAAPEMI GR Y GP  D+WS GVVLF +V GFLPFED NT+ LYKKILS +Y++P +LS
Sbjct:   57 KILEKKRIVQVADVERVAREIKILKRNRHQNVIQLYEVIDSPERIFLIMEHIDGGEMFEYIVAHHRIREPEAAFLFRQIVDGLAYLHANEVTHRDLKPENLLLQSIRHHNHRQQQYYDQSVSTSLLVKIVDFGLSNTHDGGRLLRTACGSPCYAAPEMIQGRLYHGPIADMWSLGVVLFAMVCGFLPFEDSNTNLLYKKILSANYKMPTFLS 268          
BLAST of mRNA_H-elongata_contig66536.14253.1 vs. uniprot
Match: A0A485L227_9STRA (Aste57867_14870 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L227_9STRA)

HSP 1 Score: 281 bits (718), Expect = 2.840e-87
Identity = 129/197 (65.48%), Postives = 160/197 (81.22%), Query Frame = 1
Query:    1 KVMQKNRIRTIADVKRVSREIKILKRVRHPNVIALYEVLDTPSAIYFMMEHCDGGELFDYIVRHQRLQEGQACFFFRQLVDGIDYLHNHYVTHRDLKPENLLLQSAPDGWQLKIIDFGLSNTHEGDKLLQTACGSPCYAAPEMIAGRSYRGPAVDIWSCGVVLFTLVAGFLPFEDPNTSALYKKILSGSYELPRWLS 591
            K+++K RI  IAD +RV+REIKILKR  H NVI LY+V+DT  AIY +ME+ DGGE+F+YIV+H R++E +A F F Q+V+ +DYLH + VTHRDLKPENLLLQ  P+G  +K++DFGLSNTHEGD+LLQTACGSPCYAAPEMI G+ Y GP  DIWS GV+LF +V G+LPFED NTS LYKKILSG Y+ P ++S
Sbjct:   51 KILEKCRILEIADAERVAREIKILKRNFHTNVIQLYQVIDTSEAIYLVMEYIDGGEMFEYIVKHHRIREKEAVFMFLQIVEALDYLHKNDVTHRDLKPENLLLQGGPNGIMVKVVDFGLSNTHEGDRLLQTACGSPCYAAPEMIEGKLYIGPKADIWSLGVILFAMVCGYLPFEDNNTSVLYKKILSGQYKAPNYIS 247          
BLAST of mRNA_H-elongata_contig66536.14253.1 vs. uniprot
Match: A0A3L6UQI4_9STRA (Protein kinase domain-containing protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UQI4_9STRA)

HSP 1 Score: 274 bits (701), Expect = 3.760e-87
Identity = 128/198 (64.65%), Postives = 159/198 (80.30%), Query Frame = 1
Query:    1 KVMQKNRIRTIADVKRVSREIKILKRVRHPNVIALYEVLDTPSAIYFMMEHCDGGELFDYIVRHQRLQEGQACFFFRQLVDGIDYLHNHYVTHRDLKPENLLLQSAP-DGWQLKIIDFGLSNTHEGDKLLQTACGSPCYAAPEMIAGRSYRGPAVDIWSCGVVLFTLVAGFLPFEDPNTSALYKKILSGSYELPRWLS 591
            K+++K RI  IAD +RV+REIKILKR  H NVI LY+V+DT  AIY +ME+ DGGE+F+YIV+H R++E +A + F Q+V+ +DYLH + VTHRDLKPENLLLQ  P  G  +K++DFGLSNTHEGD+LLQTACGSPCYAAPEMI G+ Y GP  DIWS GV+LF +V G+LPFED NTS LYKKILSG Y+ P ++S
Sbjct:   49 KILEKCRILEIADAERVAREIKILKRNFHTNVIQLYQVIDTSEAIYLVMEYIDGGEMFEYIVKHHRIREKEAVYMFLQIVEALDYLHQNDVTHRDLKPENLLLQGTPASGLLVKVVDFGLSNTHEGDRLLQTACGSPCYAAPEMIEGKLYIGPKADIWSLGVILFAMVCGYLPFEDNNTSVLYKKILSGQYKAPNYIS 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66536.14253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB02_ECTSI1.300e-12389.95Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835YLZ1_9STRA1.180e-9571.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S1XXR5_9STRA1.260e-9468.50Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3YB70_HETAK1.480e-9468.02Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0YLG1_AURAN8.700e-9365.48Protein kinase domain-containing protein (Fragment... [more]
F0YIP5_AURAN1.810e-9265.48Protein kinase domain-containing protein (Fragment... [more]
W7TTT1_9STRA1.600e-8865.35Protein kinase domain containing protein n=1 Tax=N... [more]
A0A3R7GSN4_9STRA3.480e-8861.32Protein kinase domain-containing protein n=2 Tax=P... [more]
A0A485L227_9STRA2.840e-8765.48Aste57867_14870 protein n=1 Tax=Aphanomyces stella... [more]
A0A3L6UQI4_9STRA3.760e-8764.65Protein kinase domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66536contigH-elongata_contig66536:367..2898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score376.7
Seed ortholog evalue6.6e-102
Seed eggNOG ortholog2880.D8LB02
KEGG koko:K07198,ko:K08798,ko:K19009
KEGG Pathwayko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,ko05418,map04068,map04140,map04150,map04151,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410,map05418
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0583@1,KOG0583@2759
EC2.7.11.1,2.7.11.11
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03029,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase
Ec32 orthologEc-27_005760.1
Exons5
Model size597
Cds size591
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66536.14253.1prot_H-elongata_contig66536.14253.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66536 367..2892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931054.6448598-CDS-H-elongata_contig66536:366..5201622931054.6448598-CDS-H-elongata_contig66536:366..520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66536 367..520 -
1691679679.3735676-CDS-H-elongata_contig66536:366..5201691679679.3735676-CDS-H-elongata_contig66536:366..520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66536 367..520 -
1622931054.6701481-CDS-H-elongata_contig66536:1013..10841622931054.6701481-CDS-H-elongata_contig66536:1013..1084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66536 1014..1084 -
1691679679.3850708-CDS-H-elongata_contig66536:1013..10841691679679.3850708-CDS-H-elongata_contig66536:1013..1084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66536 1014..1084 -
1622931054.6883044-CDS-H-elongata_contig66536:1595..17301622931054.6883044-CDS-H-elongata_contig66536:1595..1730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66536 1596..1730 -
1691679679.3947673-CDS-H-elongata_contig66536:1595..17301691679679.3947673-CDS-H-elongata_contig66536:1595..1730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66536 1596..1730 -
1622931054.7115817-CDS-H-elongata_contig66536:2145..22211622931054.7115817-CDS-H-elongata_contig66536:2145..2221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66536 2146..2221 -
1691679679.4070737-CDS-H-elongata_contig66536:2145..22211691679679.4070737-CDS-H-elongata_contig66536:2145..2221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66536 2146..2221 -
1622931054.7305288-CDS-H-elongata_contig66536:2737..28921622931054.7305288-CDS-H-elongata_contig66536:2737..2892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66536 2738..2892 -
1691679679.4195611-CDS-H-elongata_contig66536:2737..28921691679679.4195611-CDS-H-elongata_contig66536:2737..2892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66536 2738..2892 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931054.7508588-UTR-H-elongata_contig66536:2892..28981622931054.7508588-UTR-H-elongata_contig66536:2892..2898Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66536 2893..2898 -
1691679679.4361002-UTR-H-elongata_contig66536:2892..28981691679679.4361002-UTR-H-elongata_contig66536:2892..2898Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66536 2893..2898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66536.14253.1

>prot_H-elongata_contig66536.14253.1 ID=prot_H-elongata_contig66536.14253.1|Name=mRNA_H-elongata_contig66536.14253.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
MQKNRIRTIADVKRVSREIKILKRVRHPNVIALYEVLDTPSAIYFMMEHC
DGGELFDYIVRHQRLQEGQACFFFRQLVDGIDYLHNHYVTHRDLKPENLL
LQSAPDGWQLKIIDFGLSNTHEGDKLLQTACGSPCYAAPEMIAGRSYRGP
AVDIWSCGVVLFTLVAGFLPFEDPNTSALYKKILSGSYELPRWLSDG
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mRNA from alignment at H-elongata_contig66536:367..2898-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66536.14253.1 ID=mRNA_H-elongata_contig66536.14253.1|Name=mRNA_H-elongata_contig66536.14253.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2532bp|location=Sequence derived from alignment at H-elongata_contig66536:367..2898- (Himanthalia elongata Himel1 dioecious)
AAGGTGATGCAGAAAAATCGGATCCGCACGATCGCGGACGTGAAGAGAGT CAGCCGCGAGATCAAGATCCTCAAGCGCGTGCGACATCCAAATGTTATCG CGCTGTACGAGGTGTTAGACACGCCTTCCGCTATCTACTTTATGATGGAA CATTGTGACGGGTGAGCATCATTACTAAACTCCTGCGAGCGCGTTTCTTG CGTCCCGGCCATCATTAAAACGCAATCACGTGTGCAACTTCCAAAACCCT TTGGGGGGCTTCCCCAAAGCGATTTTGCCGGCGATCGGCTTATGACGTCA GCGATATTCCTGTATGTGGGTTACCACCCCGCGAGGAACGGGCGCCATTT GCAAGGAGGTGTAGTCGCTTACGAAGGGTAGCAAGCGCACTGAGTGCTCT TTATAAATGCAGAATGATTGTGGTGGTACAGCTCACCGTTGTCCATACCA TAATATTGTACACACAGTTTTCGAGAGGATCACTATCCCAAATGTCAAAG CACCATCCACGTCCGCGCGGCCTGAGCTGGATAGGCGTCAATCGTTTTCG TCCACGTTGTTCTGGTTGATACCACTCACTATCTCGTCGATCAAAAGACG ACTTCATGGCGCTTGCGCACAGACCCTCACAGCCCAATGTTTCTCCCCTT GTTTCTTTTTTGCCTGCGTTTAAACAGCGGGGAGCTTTTTGACTACATCG TGCGCCATCAGCGTCTTCAGGAGGGACAGGCGTGCTTCTTTTTCAGGCAA CTTGTGAGGGGAAAAGCTTCCCTGCGAGGCTTTCTTGCTTTCTCTGGCCC GAATGTATCCCCTTATGTGTTTGTACTATAAAAACGTATCTCTACCCAAG GCTCGCGAACATATCGCTTGTGCAAGAAACACTAAAGGTAGATAGCGTAC ATCGGTACCTGGGGGGGCGCGCACGTGGACTCTGCCCGGACCTGTTCCCA CGCGAGAGAATACCGGGTGTGTCCTGCATCGATATAGGTGAAGCATCGGA AAGTCGCTCGCTTTGAACACACGCCGGAAAATCGTGGTCATGGTGTCGAC TATGTAAGAGGGTACGAGTTTGCAACATTCTTTCTGTCGCGGGTGAACTC TCAAACCGACGCCGCTTTACAATGATATATCTGGTATATCTTGTCGGCCC TGGTGTATCGGTGGGAAGGTGGACGGCATCGACTACCTACACAACCACTA CGTGACGCACAGGGACCTGAAGCCGGAGAATCTTCTCCTGCAGTCGGCGC CCGACGGCTGGCAGCTCAAGATCATCGACTTTGGCCTCAGCAACACGCAT GAGGTCTGCGCCGATTGCCCTGGCTCGTTTTTTTGCGTGCTTTTGTGCTT CGCGAGAGGGAAAGGGTGGAAACCAGCCGCCTTGTTCGGCCGACGGGGTC TTCGTACACGCCCAAAACCTTCTCGGTTGTGTCGTACTGCTCTGACAACA TTGAGGCAGCATGAGAGGGAAGGAATCTTGTATGATGCGCACGTTAGCGT GTCCGCATTATGTAGTGTGAAGCCCTTCCATCGACCCTCCGGATAAACGA GCCCCACTGCTAATCCCATCTTAAGCCAAACTCGCCTTTGAGAAAAAGTT TGTCGATTTCGTGGCAGCGCGGTGCCAAAGCTGTCTCGGGCCTCGGACCT GACTCAACTCCGTTGCCTGACATCACCTCCTTCTACGACAAATTCACGCA TCGCACGGGGAAAACCCGCCAACACGTTTCTCTTCACACCCACACTTCCC TTCGATGATGACAACGAATATTCTTGAAAATGTGTTTTCCATATGCTGCG TTTCTTCCGTCCAGGGAGACAAGCTGTTACAGACCGCTTGCGGATCTCCG TGCTACGCCGCACCAGAGATGATCGCGGGAAGGAGGTGATTACCCCTCCC GCGCGCGCGCTTGTGTCGGCCGATCGTACACCTGTCTTTTTTTGTTTTTT AGGAAAAGCTCGCGCTAAAAGTAACTGATGATCGATATTTTGGTGGAGTT TAGCAGCATGAAGGCTTCCTAAGCCGCAACGACCCCGCCTCCACCCGCCC CCTTCCCGATAGCCTCGTACCCGACCTTCTAGCGTGGTCGTCACGGGAAG GAAGAGTTTACGGCATTTGAACTGCGATGGCGACAAGAAGATGCGTTTTT ATTCGCAATCCTTCCCTTGGGAAACGGTAAAACAGCTGGATGTGTACGCT GCGAACAAGCCAACTTTTGTGCAGTAGCACTTGGCCCTTTTCCCTATCGA TCCTGCGCGTTTTCCTTAGGGTCAAACCACCCTATCGATCCGATCCTTCT ATCGATCCTATCCTTAATCCTTCTCTTCCGTACCTCACGCTCATAGAACG CCAAAAACCCCCACCCCTGATGGGCCAGCTACCGAGGACCAGCGGTGGAC ATCTGGAGCTGTGGAGTGGTTCTCTTTACGCTCGTGGCGGGTTTCCTGCC TTTCGAAGACCCCAACACATCCGCCTTGTATAAGAAGATATTGTCTGGCT CGTACGAGCTACCGCGCTGGCTTTCCGACGGT
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Coding sequence (CDS) from alignment at H-elongata_contig66536:367..2898-

>mRNA_H-elongata_contig66536.14253.1 ID=mRNA_H-elongata_contig66536.14253.1|Name=mRNA_H-elongata_contig66536.14253.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig66536:367..2898- (Himanthalia elongata Himel1 dioecious)
ATGCAGAAAAATCGGATCCGCACGATCGCGGACGTGAAGAGAGTCAGCCG
CGAGATCAAGATCCTCAAGCGCGTGCGACATCCAAATGTTATCGCGCTGT
ACGAGGTGTTAGACACGCCTTCCGCTATCTACTTTATGATGGAACATTGT
GACGGATGCAGAAAAATCGGATCCGCACGATCGCGGACGTGAAGAGAGTC
AGCCGCGAGATCAAGATCCTCAAGCGCGTGCGACATCCAAATGTTATCGC
GCTGTACGAGGTGTTAGACACGCCTTCCGCTATCTACTTTATGATGGAAC
ATTGTGACGGCGGGGAGCTTTTTGACTACATCGTGCGCCATCAGCGTCTT
CAGGAGGGACAGGCGTGCTTCTTTTTCAGGCAACTTCGGGGAGCTTTTTG
ACTACATCGTGCGCCATCAGCGTCTTCAGGAGGGACAGGCGTGCTTCTTT
TTCAGGCAACTTGTGGACGGCATCGACTACCTACACAACCACTACGTGAC
GCACAGGGACCTGAAGCCGGAGAATCTTCTCCTGCAGTCGGCGCCCGACG
GCTGGCAGCTCAAGATCATCGACTTTGGCCTCAGCAACACGCATGAGGTG
GACGGCATCGACTACCTACACAACCACTACGTGACGCACAGGGACCTGAA
GCCGGAGAATCTTCTCCTGCAGTCGGCGCCCGACGGCTGGCAGCTCAAGA
TCATCGACTTTGGCCTCAGCAACACGCATGAGGGAGACAAGCTGTTACAG
ACCGCTTGCGGATCTCCGTGCTACGCCGCACCAGAGATGATCGCGGGAAG
GAGGGAGACAAGCTGTTACAGACCGCTTGCGGATCTCCGTGCTACGCCGC
ACCAGAGATGATCGCGGGAAGGAGCTACCGAGGACCAGCGGTGGACATCT
GGAGCTGTGGAGTGGTTCTCTTTACGCTCGTGGCGGGTTTCCTGCCTTTC
GAAGACCCCAACACATCCGCCTTGTATAAGAAGATATTGTCTGGCTCGTA
CGAGCTACCGCGCTGGCTTTCCGACGGTCTACCGAGGACCAGCGGTGGAC
ATCTGGAGCTGTGGAGTGGTTCTCTTTACGCTCGTGGCGGGTTTCCTGCC
TTTCGAAGACCCCAACACATCCGCCTTGTATAAGAAGATATTGTCTGGCT
CGTACGAGCTACCGCGCTGGCTTTCCGACGGT
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