mRNA_H-elongata_contig66533.14252.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66533.14252.1
Unique NamemRNA_H-elongata_contig66533.14252.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66533.14252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66533contigH-elongata_contig66533:2652..3243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size560
Cds size396
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66533.14252.1prot_H-elongata_contig66533.14252.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66533 2814..3243 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931054.5637898-UTR-H-elongata_contig66533:2651..28131622931054.5637898-UTR-H-elongata_contig66533:2651..2813Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66533 2652..2813 +
1691679679.3379443-UTR-H-elongata_contig66533:2651..28131691679679.3379443-UTR-H-elongata_contig66533:2651..2813Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66533 2652..2813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931054.5790315-CDS-H-elongata_contig66533:2813..28351622931054.5790315-CDS-H-elongata_contig66533:2813..2835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66533 2814..2835 +
1691679679.348986-CDS-H-elongata_contig66533:2813..28351691679679.348986-CDS-H-elongata_contig66533:2813..2835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66533 2814..2835 +
1622931054.5927417-CDS-H-elongata_contig66533:2869..32431622931054.5927417-CDS-H-elongata_contig66533:2869..3243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66533 2870..3243 +
1691679679.360199-CDS-H-elongata_contig66533:2869..32431691679679.360199-CDS-H-elongata_contig66533:2869..3243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66533 2870..3243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66533.14252.1

>prot_H-elongata_contig66533.14252.1 ID=prot_H-elongata_contig66533.14252.1|Name=mRNA_H-elongata_contig66533.14252.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MTSINRIVDMVFVAAAAAAAAGGANRSSAYFLYENSSRSYMLYDLPIPYP
SPPILHPSSKPRMCESLHLETNIRRRRARLETFAERGCKHFRPQGYSTPM
YPQATSALCAFGRGVFTSRAMKRVSKYNICAH
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mRNA from alignment at H-elongata_contig66533:2652..3243+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66533.14252.1 ID=mRNA_H-elongata_contig66533.14252.1|Name=mRNA_H-elongata_contig66533.14252.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=592bp|location=Sequence derived from alignment at H-elongata_contig66533:2652..3243+ (Himanthalia elongata Himel1 dioecious)
CCGAGGATGCCAAGGCGCTGGCTGTAGTAACCCACCGTAGTTCGTTTCGT
GGAACGTGCAGCGTCGTGGGGTGTGTGGAGAGCTGTTCGTGCGATCCGGC
GCCCTCTCTTTCCTCTCGCCGTCTATTTTTTTGTACCGTGTAGAAAGTAG
TAGGAAGTGGGTATGACTTCAATCAATCGGATAGGCAGTTCAGTAGCGAG
GATAGGCACACGCAACAGTGGATATGGTGTTTGTCGCTGCTGCTGCTGCT
GCTGCTGCAGGCGGTGCGAATCGTTCGTCCGCCTATTTCCTCTACGAAAA
CTCGTCGCGTAGTTATATGTTGTATGATCTCCCCATTCCCTACCCCTCTC
CCCCCATCTTACACCCCTCCAGCAAACCTCGAATGTGTGAATCACTGCAC
CTCGAAACAAACATACGTAGACGACGGGCGCGGTTAGAAACGTTCGCCGA
ACGCGGTTGCAAGCATTTCCGTCCGCAGGGGTACTCTACCCCCATGTACC
CACAAGCCACAAGCGCGCTTTGCGCCTTCGGCAGAGGCGTATTCACGTCG
AGAGCCATGAAAAGAGTGTCGAAATATAATATATGTGCGCAT
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Coding sequence (CDS) from alignment at H-elongata_contig66533:2652..3243+

>mRNA_H-elongata_contig66533.14252.1 ID=mRNA_H-elongata_contig66533.14252.1|Name=mRNA_H-elongata_contig66533.14252.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig66533:2652..3243+ (Himanthalia elongata Himel1 dioecious)
ATGACTTCAATCAATCGGATAGATGACTTCAATCAATCGGATAGTGGATA
TGGTGTTTGTCGCTGCTGCTGCTGCTGCTGCTGCAGGCGGTGCGAATCGT
TCGTCCGCCTATTTCCTCTACGAAAACTCGTCGCGTAGTTATATGTTGTA
TGATCTCCCCATTCCCTACCCCTCTCCCCCCATCTTACACCCCTCCAGCA
AACCTCGAATGTGTGAATCACTGCACCTCGAAACAAACATACGTAGACGA
CGGGCGCGGTTAGAAACGTTCGCCGAACGCGGTTGCAAGCATTTCCGTCC
GCAGGGGTACTCTACCCCCATGTACCCACAAGCCACAAGCGCGCTTTGCG
CCTTCGGCAGAGGCGTATTCACGTCGAGAGCCATGAAAAGAGTGTCGAAA
TATAATATATGTGCGCATTGGATATGGTGTTTGTCGCTGCTGCTGCTGCT
GCTGCTGCAGGCGGTGCGAATCGTTCGTCCGCCTATTTCCTCTACGAAAA
CTCGTCGCGTAGTTATATGTTGTATGATCTCCCCATTCCCTACCCCTCTC
CCCCCATCTTACACCCCTCCAGCAAACCTCGAATGTGTGAATCACTGCAC
CTCGAAACAAACATACGTAGACGACGGGCGCGGTTAGAAACGTTCGCCGA
ACGCGGTTGCAAGCATTTCCGTCCGCAGGGGTACTCTACCCCCATGTACC
CACAAGCCACAAGCGCGCTTTGCGCCTTCGGCAGAGGCGTATTCACGTCG
AGAGCCATGAAAAGAGTGTCGAAATATAATATATGTGCGCAT
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