mRNA_H-elongata_contig66498.14247.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66498.14247.1
Unique NamemRNA_H-elongata_contig66498.14247.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66498.14247.1 vs. uniprot
Match: D8LFV7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFV7_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.610e-19
Identity = 66/119 (55.46%), Postives = 71/119 (59.66%), Query Frame = 2 
Query:  560 QAPGQDFTVDVKDERFAAALEGDTRFGIDRTDSSFKDTEGMRHILEERARRRDK-----RYGTQSGAFSVLRGGTPPANGHDGTTGGVLGARGGMKDKGDLSSLVSKLKSRGLGVGGHS 901
            +APGQDF VDV DERFAA LEGDTRFGIDRTDSSFKDTEGMR ILEER RR+ K     R G  +G                           G K KGDLS LV+KLK+RGL   G S
Sbjct:  799 KAPGQDFRVDVADERFAALLEGDTRFGIDRTDSSFKDTEGMRSILEERTRRKGKKRRADRDGPDAGXXXXXXXXXXXXXXXXXXXXXXXXXLCGGK-KGDLSLLVNKLKTRGLAENGSS 916
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BLAST of mRNA_H-elongata_contig66498.14247.1 vs. uniprot
Match: B7GAK3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAK3_PHATC)

HSP 1 Score: 65.9 bits (159), Expect = 2.490e-8
Identity = 48/105 (45.71%), Postives = 59/105 (56.19%), Query Frame = 2 
Query:  569 GQDFTVDVKDERFAAALEG-DTRFGIDRTDSSFKDTEGMRHILEERA-RRRDKRYGTQSGAFSVLRGGTPPANGHDGTTGGVLGARGGMKDKGDLSSLVSKLKSR 877
            G +F VD  D+RF A L+G D RFGIDRTD SFK+T  MR IL+E+  RR+DKR    + A S  +    P    + T     GA         LSSLVS LKS+
Sbjct:  601 GTEFHVDTSDQRFKAVLDGTDDRFGIDRTDPSFKETPAMREILKEQTLRRKDKRRRKSTKAESASKQKVVPNVSAEATLTSTGGASA-------LSSLVSSLKSK 698
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BLAST of mRNA_H-elongata_contig66498.14247.1 vs. uniprot
Match: A0A1E7F590_9STRA (NUC153 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F590_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.130e-6
Identity = 46/111 (41.44%), Postives = 54/111 (48.65%), Query Frame = 2 
Query:  551 IERQAPGQDFTVDVKDERFAAALEG-DTRFGIDRTDSSFKDTEGMRHIL-EERARRRDKRYGTQSGAFSVLRGGTPPANGHDGTTGGVLGARGGMKDKGDLSSLVSKLKSR 877
            I     G  F VD KD RF A L+G D RFGID+TD SFKDT  MR I+ E+  RR++KR        + +    P  N          GA         LS LV KLKSR
Sbjct:  670 IAADVSGSSFKVDTKDNRFQAVLDGSDARFGIDKTDPSFKDTSAMREIISEQNMRRKNKRQKKAQPMENAV----PDVNADSSKGVKTSGANA-------LSFLVQKLKSR 769
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66498.14247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFV7_ECTSI1.610e-1955.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
B7GAK3_PHATC2.490e-845.71Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1E7F590_9STRA1.130e-641.44NUC153 domain-containing protein n=1 Tax=Fragilari... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66498contigH-elongata_contig66498:1578..3274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue8e-19
Seed eggNOG ortholog2880.D8LFV7
Preferred nameESF1
KEGG koko:K22197
KEGG Pathwayko05225,map05225
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.rRNA processing
EggNOG OGsCOG5638@1,KOG2318@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size901
Cds size396
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66498.14247.1prot_H-elongata_contig66498.14247.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66498 1578..2769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931054.137922-CDS-H-elongata_contig66498:1577..18111622931054.137922-CDS-H-elongata_contig66498:1577..1811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66498 1578..1811 -
1691679679.1627824-CDS-H-elongata_contig66498:1577..18111691679679.1627824-CDS-H-elongata_contig66498:1577..1811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66498 1578..1811 -
1622931054.1921735-CDS-H-elongata_contig66498:2607..27691622931054.1921735-CDS-H-elongata_contig66498:2607..2769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66498 2608..2769 -
1691679679.1762235-CDS-H-elongata_contig66498:2607..27691691679679.1762235-CDS-H-elongata_contig66498:2607..2769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66498 2608..2769 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931054.2047122-UTR-H-elongata_contig66498:2769..32741622931054.2047122-UTR-H-elongata_contig66498:2769..3274Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66498 2770..3274 -
1691679679.1844296-UTR-H-elongata_contig66498:2769..32741691679679.1844296-UTR-H-elongata_contig66498:2769..3274Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66498 2770..3274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66498.14247.1

>prot_H-elongata_contig66498.14247.1 ID=prot_H-elongata_contig66498.14247.1|Name=mRNA_H-elongata_contig66498.14247.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MHTNIFVSWLTYRLNIERQAPGQDFTVDVKDERFAAALEGDTRFGIDRTD
SSFKDTEGMRHILEERARRRDKRYGTQSGAFSVLRGGTPPANGHDGTTGG
VLGARGGMKDKGDLSSLVSKLKSRGLGVGGHS
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mRNA from alignment at H-elongata_contig66498:1578..3274-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66498.14247.1 ID=mRNA_H-elongata_contig66498.14247.1|Name=mRNA_H-elongata_contig66498.14247.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1697bp|location=Sequence derived from alignment at H-elongata_contig66498:1578..3274- (Himanthalia elongata Himel1 dioecious)
CAGGAAGAGGAAGAACGTCGGGACTATGACATGCATCGATTGGTCCGCGA
GGAAAAGATGAAGGGCAAGAAGCTGAGAGGGAAACGAAAGCGCAAGGAGA
TGGCTCGGGAGAAGGCGAGATAGAACGTGGAGAACAATTCGTTACATAAT
CTACACAGCATTTAACTCTATGCTCTTTTGGGGGGAGGCGTTTTTGTGTT
ATTTACTAGCGAGTAGGAGAGAAATGACGTGGTCCGCGGGTCTGCTTCAT
TTCTAGTATGTATTTTGTCATGTGTGTACCTGTGTGTACCTGTGTGTGCA
TGCTTGTGTGTGTCAGCCTGTGTTTCCTATGTTTGCCTCTAACAAGGTTT
CCATTTGATTTTTGAATAGGGTAATATAGAGAACGCGGCGGCTCCATCTC
GGAAGGTGATTTCATACTATACTCTACTATAGTCTAGAAAGCCCACGGCA
CGGTTTTGGGCTTCCGACTTTGCGTTCATTTATCAAGCGTCTGTAGACGA
AATACATGCATACAAACATATTCGTCTCTTGGTTGACATATCGCCTCAAT
ATTGAACGCCAGGCCCCAGGACAAGACTTCACGGTGGATGTGAAAGACGA
GCGCTTCGCGGCCGCGCTGGAGGGAGACACGCGGTTTGGCATTGACCGAA
CGGATTCGAGCTTCAAGGTGCAGTAACGCCTTCACCACCAGGGCTTGCAG
TAACGCCTTCCAAACCCTCGAGGGAAGCATTTTGTTTTTTCGATCGCCAC
TCACCAAGGAAGAGGAGGATAAGAAGGAGGAGGAGGACGGGGGGGGGAGG
AATGGCGACCGACCATCGTTTGAGATGATGTCCTAATATTGGAGTGATCC
CCCAATATGGTATTATGATGTGAGAGGGGGGGATTTGACGAATCTCTCCC
CGAGTTCGAGATGGAGTGGGACGATAGCAAGGCATCCCTCGCTGGGATGG
ACATATCCATCCCCTCCTTTAGCTCAGATTGCTCCAAGCACAATACTTCA
CCGAGGGATGTATTCAATACGTCCGTAGGATGGACTGTTTTGAAACGCCT
CCCCCCCCTGAAACGCCCCTCCCCCCCATTGAAACCAAAGGTTCGCTCAA
GTCTTCTCTTTCTACGGCTGGATTACACCCGTACCAGATGAAATGAAATC
GCGCACGTATGATTTGTGTTAAGAGGATCGCTCCCCTAAAGTGACGAGTT
GCACTAGTGAGAGAGGCTCGCCGTGGGCGGTGCATCCAGTTAATATATGT
GTATCTATCGGCGGGAGAAGGGTATTATTTCTTTTTTTCAGCCCCTTTTC
TTTCTAGCCAGGGTCACAGACATCGTTGCGTCCGGCGGCATCTAGGAGCG
AGAGACGCTGATCAGCGAAATAGCTATCCCACCGAGCAGCGCGTTTAATA
CTTCCACCCTCAATAACCCACGCGCATCTCGCTCGTGGCATCACTCGACG
CTCATCGCTACAGGATACGGAAGGGATGCGTCACATTTTGGAGGAACGCG
CGCGAAGGCGAGACAAACGGTATGGAACCCAGTCGGGAGCGTTTTCGGTT
CTGCGAGGGGGAACGCCTCCCGCGAACGGACATGACGGGACTACCGGAGG
TGTCCTCGGGGCGCGTGGGGGGATGAAGGACAAGGGCGATCTCTCGTCGC
TCGTCAGTAAGCTCAAAAGCAGGGGACTTGGGGTTGGAGGCCACAGC
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Coding sequence (CDS) from alignment at H-elongata_contig66498:1578..3274-

>mRNA_H-elongata_contig66498.14247.1 ID=mRNA_H-elongata_contig66498.14247.1|Name=mRNA_H-elongata_contig66498.14247.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig66498:1578..3274- (Himanthalia elongata Himel1 dioecious)
ATGCATACAAACATATTCGTCTCTTGGTTGACATATCGCCTCAATATTGA
ACGCCAGGCCCCAGGACAAGACTTCACGGTGGATGTGAAAGACGAGCGCT
TCGCGGCCGCGCTGGAGGGAGACACGCGGTTTGGCATTGACCGAACGGAT
TCGAGCTTCAAGATGCATACAAACATATTCGTCTCTTGGTTGACATATCG
CCTCAATATTGAACGCCAGGCCCCAGGACAAGACTTCACGGTGGATGTGA
AAGACGAGCGCTTCGCGGCCGCGCTGGAGGGAGACACGCGGTTTGGCATT
GACCGAACGGATTCGAGCTTCAAGGATACGGAAGGGATGCGTCACATTTT
GGAGGAACGCGCGCGAAGGCGAGACAAACGGTATGGAACCCAGTCGGGAG
CGTTTTCGGTTCTGCGAGGGGGAACGCCTCCCGCGAACGGACATGACGGG
ACTACCGGAGGTGTCCTCGGGGCGCGTGGGGGGATGAAGGACAAGGGCGA
TCTCTCGTCGCTCGTCAGTAAGCTCAAAAGCAGGGGACTTGGGGTTGGAG
GCCACAGCGATACGGAAGGGATGCGTCACATTTTGGAGGAACGCGCGCGA
AGGCGAGACAAACGGTATGGAACCCAGTCGGGAGCGTTTTCGGTTCTGCG
AGGGGGAACGCCTCCCGCGAACGGACATGACGGGACTACCGGAGGTGTCC
TCGGGGCGCGTGGGGGGATGAAGGACAAGGGCGATCTCTCGTCGCTCGTC
AGTAAGCTCAAAAGCAGGGGACTTGGGGTTGGAGGCCACAGC
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