mRNA_H-elongata_contig66462.14241.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66462.14241.1
Unique NamemRNA_H-elongata_contig66462.14241.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A6H5K1Z3_9PHAE (EamA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z3_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 1.040e-102
Identity = 169/256 (66.02%), Postives = 209/256 (81.64%), Query Frame = 3
Query:  228 ASGYNPIGVTPPTGRSPLRSHMFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADNEE-DSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVSERK 992
            A G NP   +P   R  +RSH+FM K GL +S++WF AQW+Y TSLA+TSVTSSTIIANSS+LFTY+F+V+A+TERFT  KT GVALALLGAV   L DNE+ D++ DSLWGDA AL+SA+ Y VY+ IL +  PSDDEVS++LV+GY+G AN LIFLPL+VGLA APG  +L GLT+H+VQLIV + + DNV+S L WARAILLTT TVATVGCS+TIPIAFVSDF +HGKVP+ L+V+GA L++GGF FVS+R+
Sbjct:   93 APGSNPPDHSPEKPR--MRSHIFMLKAGLCVSLVWFFAQWTYNTSLAYTSVTSSTIIANSSALFTYLFSVVARTERFTKTKTVGVALALLGAV--GLGDNEDGDAAHDSLWGDAAALMSAVGYGVYSTILTILCPSDDEVSMSLVLGYMGVANALIFLPLVVGLAYAPGMHILHGLTFHIVQLIVFKAVMDNVISGLLWARAILLTTPTVATVGCSLTIPIAFVSDFAMHGKVPNPLAVLGAFLVVGGFYFVSDRE 344          
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A7S2GQ05_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GQ05_9STRA)

HSP 1 Score: 201 bits (512), Expect = 3.610e-58
Identity = 121/287 (42.16%), Postives = 177/287 (61.67%), Query Frame = 3
Query:  138 CTITCCEECPTTSIVMLRDYVGRRQHVTKYASGYNPIGVTPPTGRSPLRSHMFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADNEE--DSSGD--SLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLP-LLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVS 983
            C   C +E     +++  DY      V +     NP       G     SH+   KI   +  IWFLA W+Y  SL+ TSVTSSTIIA +SSLFTY+  +L+  E FTL K  GV L + GA++VAL D EE  D+ G   S WGD++ L+SA+ Y+VYT+++  Q P+++ V++ L+ GY+G  N++  +P LL+  +  P  ++  GL+  V+  +V +G+ DNVLS+  WA A+L TT TVATVG S+TIP+AF+SD +L GK P  LS +GA+ ++ GF+ V+
Sbjct:   81 CGFCCTKEVEVRKLILDSDY-----DVCEGEESENPPEHPLSAGHQGFWSHLSTAKISAMICPIWFLANWTYNQSLSMTSVTSSTIIATTSSLFTYVLAILSGNEVFTLTKLTGVLLCIAGAIMVALNDREEADDAGGSESSFWGDSVCLVSAVLYSVYTVLIRAQVPNEETVAMPLLFGYIGVFNMIGLVPVLLIVSSFVP--QLFSGLSSEVLGFVVLKGLADNVLSDYLWALAVLYTTPTVATVGLSLTIPLAFLSDALLKGKAPTVLSALGAVSVVLGFVSVN 360          
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A836CFC6_9STRA (EamA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFC6_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.600e-50
Identity = 115/249 (46.18%), Postives = 153/249 (61.45%), Query Frame = 3
Query:  279 LRSHMFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADNEEDSSGD-----------SLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVSERK 992
            LRSH   F+  LS+  +WF A  +Y  SL  TSVTS+TII+ +SSL+T + +V    ER T     GV LA+ G  LV +AD      G            +L GDA+A+++A+ Y VY+ +LAV  P D EVS+ L+ GYLGA +     PLL  LA AP      GLT     +IVA G+FDNVL+++ WARA++LTT TVA VG ++TIP AFV+DF+LH  VP  L V+GA +++ GF  VS RK
Sbjct:  187 LRSHWSTFRAALSICPVWFAANLAYNASLRSTSVTSNTIISCTSSLWTLLLSVACARERATWGTALGVLLAVGGGALVGVADTAARHGGXXXXXXXXXDRGTLLGDALAVLAAVLYGVYSTLLAVHFPRDAEVSMPLLFGYLGALSAAAGAPLL-ALAHAP----FAGLTRRAAAIIVANGVFDNVLADMLWARAVVLTTPTVAAVGLALTIPFAFVTDFLLHAMVPAPLEVLGAAMVVSGFAVVSRRK 430          
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A8K1FBE9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBE9_PYTOL)

HSP 1 Score: 172 bits (437), Expect = 8.940e-47
Identity = 97/233 (41.63%), Postives = 149/233 (63.95%), Query Frame = 3
Query:  291 MFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADN--EEDSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVS 983
            M +FKI   +S IWF+A ++Y  SL  TSVTSSTI++++S++FT++ +V A  E F   K  GVAL +LG V     D+  E+  + D ++GD +AL +A  Y VYT  +    P ++ VSI L  G+LGA N ++  P+++      G   L GLT  ++ LI  +G+FDNVLS+  WARA+LLT+ TVATVG S+T+P A  SD++ H  VP  ++++ + L++ GF+ ++
Sbjct:  159 MAIFKISAIISPIWFVANFTYNQSLNMTSVTSSTIVSSTSTVFTFLLSVFALKEPFVWLKVFGVALCMLGNVTTVFNDSGVEDVGAEDHVFGDIVALFAAFMYGVYTTCIRRLIPDEESVSIALFFGFLGAINFVVLFPIVIAFHYT-GIESLSGLTAEILLLIGIKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPFAIFSDYIFHQAVPSLVTLLASSLVVSGFVLIN 390          
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: H3GE17_PHYRM (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GE17_PHYRM)

HSP 1 Score: 171 bits (432), Expect = 5.260e-46
Identity = 93/233 (39.91%), Postives = 149/233 (63.95%), Query Frame = 3
Query:  285 SHMFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADNEEDSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVS 983
            S+  +F+I   +S +WF+A ++Y  SL  TSV+SSTI++++S++FT++ +V+A  E F   K  GV L + G +     D   D   D ++GD +AL +A  Y VYT  +    P ++ VSI+L  G++G  N++  LP ++    + G   L GLT  +V LI  +G+FDNVLS+  WARA+LLT+ TVATVG S+T+P+A V+DF  HG +P ++++  + L+I GF+ ++
Sbjct:  148 SYRQIFRISAIISPLWFIANFTYNESLNLTSVSSSTIVSSTSTVFTFLLSVVALKEPFVWLKLAGVILCMAGNISTIFNDGGADDGADHVFGDLVALFAAFMYGVYTTAIRRLIPDEESVSISLFFGFIGVINMVCLLPFVLVFHYS-GIESLSGLTLEIVLLIGVKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPLAIVADFWFHGMLPTSVTLFASALVISGFVLIN 379          
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: D0MU52_PHYIT (Drug/Metabolite Transporter (DMT) Superfamily n=12 Tax=Phytophthora TaxID=4783 RepID=D0MU52_PHYIT)

HSP 1 Score: 169 bits (429), Expect = 1.750e-45
Identity = 93/233 (39.91%), Postives = 149/233 (63.95%), Query Frame = 3
Query:  285 SHMFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADNEEDSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVS 983
            S+  +F+I   +S +WFLA ++Y  SL  TSV+SSTI++++S++FT++ +V+A  E F   K  GV L + G +     D   D   D ++GD +AL +A  Y VYT  +    P ++ VSI+L  G++GA N++  LP+++    + G   L GL+  ++ LI  +G+FDNVLS+  WARA+LLT+ TVATVG S+T+P+A V+DF  HG  P  +++  + L+I GF+ ++
Sbjct:  157 SYSQIFRISAIISPLWFLANFTYNESLNLTSVSSSTIVSSTSTVFTFLLSVVALKEPFVWMKLAGVILCMAGNISTIFNDEGADGGTDHVFGDLVALFAAFMYGVYTTTIRRLIPDEESVSISLFFGFIGAINMVCLLPIVLAFHYS-GIESLSGLSLEILVLIGLKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPLAIVADFWFHGMRPTNVTLFASALVISGFVLIN 388          
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A7R9UA56_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA56_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.450e-45
Identity = 100/250 (40.00%), Postives = 156/250 (62.40%), Query Frame = 3
Query:  279 LRSHMFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADNEEDSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVP-DTLSVVGALLLIGGFIFVSERKSARSSGDFTQG 1025
            + SH     + L +  +WFLA ++Y  SL  TSVT+STI++ +SS+FT++  +L   ER       GV  A  G VL  L+D    + G S  GD + L+ A+ Y  YTM L V +P D+++S +L++GY+G  N ++ LP L+ +AL      LE LT+ V+ L++ +G+FDNVLS+  W RA+LLT+ TVATVG S+T+P+AF++D+  +     D  +V+G+LL++ GF  V+   +A+S G   +G
Sbjct:  145 IMSHKAHLTLALIIWPLWFLANYTYNLSLDLTSVTNSTILSTTSSVFTFLIGLLCGEERLRGMSVAGVLCAFGGVVLTTLSDATSGTDGQSFRGDVVCLVGALFYGAYTMALKVYSPGDEDMSTSLMLGYMGCVNAVLLLPALLIIALQ-SFEPLEKLTWAVLGLLLLKGLFDNVLSDYLWMRAVLLTSPTVATVGLSLTVPMAFLADYFFNPAASQDVGAVLGSLLVVAGFALVTI--AAQSEGGLEEG 391          
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A5D6YBD3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBD3_9STRA)

HSP 1 Score: 169 bits (427), Expect = 3.350e-45
Identity = 93/231 (40.26%), Postives = 149/231 (64.50%), Query Frame = 3
Query:  297 MFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADNEE--DSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVS 983
            +F I  ++S +WF A ++Y  SL  TSVTSSTI++++S++FT++ +V+   E F   K  GV L + G V     D+    D + D ++GD +AL SA  Y VYT ++    P+++ VSI+L  G++G  N +  LP ++ L    G   L GLT+ ++ LI  +G+FDNVLS+  WARA+LLT+ TVATVG S+T+P+A ++DFV H   P  ++++ + L++ GF+F++
Sbjct:  138 IFWISATISPLWFAANFTYNQSLNMTSVTSSTIVSSTSTVFTFLMSVIVLREPFKWLKVLGVVLCMAGNVSTIFNDSTSGGDGAADHVFGDLVALFSAFMYGVYTTMIRRLIPNEESVSISLFFGFIGVINFVCLLPFVL-LFHFSGVESLSGLTFEIIGLIAIKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPLAILADFVFHQSAPTPVTLLASALVLSGFVFIN 367          
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A2D4BFG5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFG5_PYTIN)

HSP 1 Score: 168 bits (425), Expect = 3.750e-45
Identity = 92/233 (39.48%), Postives = 148/233 (63.52%), Query Frame = 3
Query:  297 MFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADN----EEDSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVS 983
            + KI   +S +WF+A ++Y  SL  TSVTSSTI++++S++FT++ +V A  E F   K  GV L +LG +     D+    +  S+ D ++GD +AL +A  Y VYT  +    P ++ VSI L  G+LG  N +   P ++    A G   L GLT+ ++ L+V +G+FDNVLS+  WARA+LLT+ TVATVG S+T+P A +SD++ H  +P  ++++ +LL++ GF+ ++
Sbjct:  144 IIKISAIISPLWFIANFTYNQSLNMTSVTSSTIVSSTSTVFTFLLSVCALREPFVWMKLIGVVLCMLGNITTIFKDSGAADDASSAQDHVFGDLVALFAAFMYGVYTTAIRRLIPDEESVSIALFFGFLGVINFVALFPFVLTFHYA-GIESLSGLTHEIILLLVLKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPFAILSDYMFHQMIPGVVTLLASLLVVSGFVLIN 375          
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A662XRX8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRX8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 9.770e-45
Identity = 93/235 (39.57%), Postives = 152/235 (64.68%), Query Frame = 3
Query:  285 SHMFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALAD--NEEDSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVS 983
            S+  +F+I   +S +WF+A ++Y  SL  TSV+SSTI++++S++FT++ +V A  E F   K GGV L + G +     D  + +D + D ++GD +AL +A  Y VYT  +    P ++ VSI+L  G++G  N++  LP ++    + G   L GLT  ++ LI  +G+FDNVLS+  WARA+LLT+ TVATVG S+T+P+A V+DF  HG +P  ++++ + L+I GF+ ++
Sbjct:  159 SYRQIFRISAIISPLWFVANFTYNESLNLTSVSSSTIVSSTSTVFTFLLSVCALKEPFVWLKLGGVILCMAGNISTIFNDKVSGDDGATDHVFGDLVALFAAFMYGVYTTAIRRLIPDEESVSISLFFGFIGIINMVCLLPFVLFFHYS-GVESLSGLTLEILLLIGVKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPLAIVADFWFHGMLPSNVTLLASALVISGFVLIN 392          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1Z3_9PHAE1.040e-10266.02EamA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2GQ05_9STRA3.610e-5842.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CFC6_9STRA1.600e-5046.18EamA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A8K1FBE9_PYTOL8.940e-4741.63Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GE17_PHYRM5.260e-4639.91Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
D0MU52_PHYIT1.750e-4539.91Drug/Metabolite Transporter (DMT) Superfamily n=12... [more]
A0A7R9UA56_9STRA2.450e-4540.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A5D6YBD3_9STRA3.350e-4540.26Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4BFG5_PYTIN3.750e-4539.48Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A662XRX8_9STRA9.770e-4539.57Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66462contigH-elongata_contig66462:530..3113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.1
Seed ortholog evalue3.3e-86
Seed eggNOG ortholog2880.D8LMX8
KEGG koko:K15289
KEGG TC2.A.7.24.1,2.A.7.24.4,2.A.7.24.6
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0697@1,KOG2765@2759
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons6
Model size1028
Cds size846
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931053.4759107-UTR-H-elongata_contig66462:529..7111622931053.4759107-UTR-H-elongata_contig66462:529..711Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66462 530..711 +
1691679678.9054089-UTR-H-elongata_contig66462:529..7111691679678.9054089-UTR-H-elongata_contig66462:529..711Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66462 530..711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931053.4943998-CDS-H-elongata_contig66462:711..9051622931053.4943998-CDS-H-elongata_contig66462:711..905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66462 712..905 +
1691679678.921782-CDS-H-elongata_contig66462:711..9051691679678.921782-CDS-H-elongata_contig66462:711..905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66462 712..905 +
1622931053.5144641-CDS-H-elongata_contig66462:1128..12611622931053.5144641-CDS-H-elongata_contig66462:1128..1261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66462 1129..1261 +
1691679678.9393501-CDS-H-elongata_contig66462:1128..12611691679678.9393501-CDS-H-elongata_contig66462:1128..1261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66462 1129..1261 +
1622931053.5336819-CDS-H-elongata_contig66462:1597..16781622931053.5336819-CDS-H-elongata_contig66462:1597..1678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66462 1598..1678 +
1691679678.949765-CDS-H-elongata_contig66462:1597..16781691679678.949765-CDS-H-elongata_contig66462:1597..1678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66462 1598..1678 +
1622931053.5458362-CDS-H-elongata_contig66462:2110..22171622931053.5458362-CDS-H-elongata_contig66462:2110..2217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66462 2111..2217 +
1691679678.9600976-CDS-H-elongata_contig66462:2110..22171691679678.9600976-CDS-H-elongata_contig66462:2110..2217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66462 2111..2217 +
1622931053.5590186-CDS-H-elongata_contig66462:2588..27071622931053.5590186-CDS-H-elongata_contig66462:2588..2707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66462 2589..2707 +
1691679678.9705946-CDS-H-elongata_contig66462:2588..27071691679678.9705946-CDS-H-elongata_contig66462:2588..2707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66462 2589..2707 +
1622931053.5766287-CDS-H-elongata_contig66462:2901..31131622931053.5766287-CDS-H-elongata_contig66462:2901..3113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66462 2902..3113 +
1691679678.9806552-CDS-H-elongata_contig66462:2901..31131691679678.9806552-CDS-H-elongata_contig66462:2901..3113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66462 2902..3113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66462.14241.1prot_H-elongata_contig66462.14241.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66462 712..3113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66462.14241.1

>prot_H-elongata_contig66462.14241.1 ID=prot_H-elongata_contig66462.14241.1|Name=mRNA_H-elongata_contig66462.14241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=282bp
MLRDYVGRRQHVTKYASGYNPIGVTPPTGRSPLRSHMFMFKIGLSLSVIW
FLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGV
ALALLGAVLVALADNEEDSSGDSLWGDAMALISAIAYAVYTMILAVQAPS
DDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVA
RGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDT
LSVVGALLLIGGFIFVSERKSARSSGDFTQGG
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mRNA from alignment at H-elongata_contig66462:530..3113+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66462.14241.1 ID=mRNA_H-elongata_contig66462.14241.1|Name=mRNA_H-elongata_contig66462.14241.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2584bp|location=Sequence derived from alignment at H-elongata_contig66462:530..3113+ (Himanthalia elongata Himel1 dioecious)
AGAGGTTGCTCGGCATGTATCCATAGCGGTGGCTAATCTGCGGGCAGCAT ACAACGAACAGCCAACTCGGAAGCCGTAAGCTGTACGCAGCACATTCACA AGTCATTTTGCTCTCGGGACGCTTATGATCGTTCCTGTGCACCATAACAT GTTGCGAAGAGTGCCCAACTACTTCGATCGTCATGCTACGTGATTACGTT GGTCGTCGACAACATGTCACCAAGTACGCCTCTGGATATAACCCGATCGG CGTCACGCCGCCCACAGGTCGTTCACCTTTGAGGAGCCATATGTTTATGT TCAAGATAGGTTTGAGTCTTTCCGTCATTTGGTTTCTGGCGCAGTGGAGC TACATCACCTCTTTGGCTCACACCAGGTCTGGACGTTCGGGGCGGCGGAA GCCAATCGCAGCCTACCGACGCTAAGCTTAGTGACGACAGCTCAGCGTGA TTCGACGCACTTCGCTTATCCTTCTCAGAAATATTGCTAACTATCTCGAC CAATCGACGTGTCCCTCCACTATCTCGATCAGTCGGCGTGTTCCTCCACT TTCTCGACCAATCGGCATGTCTCCCCACTTCTTCAACCACTTCTTCCAGT GTGACAAGTAGCACCATCATAGCAAACTCCTCGTCTCTCTTCACCTACAT ATTCAACGTCTTGGCCCAAACGGAGCGGTTTACTCTTCGCAAGACAGGCG GCGTTGCTCTGGCGCTGTTAGGAGCTGTCCTGGTAAGAACAGAATAGCCA TCTTGCAAGAAAAAATTGTGCTTGTGGCAGGGCTATCACTTGTTCTGTTT TTGTTGCAGTGAGTGTAGGCGGAAAACTTACGATACTTTATCTAATCTGA AACGTAAGCACATGCGGCGCATTTGCTGTCGTCCTGTGTCGCGGTGTTTG GTGCCAGCCGCGTAGAGATTAATGACATCGACTCCTGGTGTTTCAAGAAT ACATCCATGCGATTTGGCTTACCAACCTTGTCGACAGTCTTTGCGTGTGT ATCTCACAGGTTATTGTATCGCATCCCGTACCCATTTGTGTCGCAACTCG ACTGGTGAATGCGTTAAGGTGGCACTCGCGGACAATGAGGAAGATAGCTC CGGGGATTCGCTTTGGGGAGATGCGATGGCCCTCATCTCTGCGATCGCAG TAAGACCCTGAAGCAATCGATCCTTGGATATTTCCTGGTTAGCTTGGTAT CATGCGCCAGTTCCTATTCACGGAGCGCCTTGGCTTGTGGGGGGTGGCTG CCTTCGAGCACCGTCCTCTCCCCGTGCACCCTCTTGTTTCCGCCGTGTTG CTCTCACGTCATTTTCGCTGTCGAGGTTAACACAGTGGTGCTCTTTCGAT TGTTCCGGCCTGAAACAAGCCGTCGAATCGCGTCTCGCGACCGCTTGCCT TGCACAGTCAGTAGGAAGGGTAATTTTTATACAACCCTCTTGCCCATCAG ATACGTAACCCGGGCTCTTGTCACCACTGTCCTATCGACCCTTGTGGTGC GCGATCGTCCGTCACCGTAAACGGAATAATAAACTGCTCCGTGTATTCGG ACCTTGTGTGTGGTGCTGACCGGTGTCACAGTACGCGGTTTACACTATGA TCCTGGCTGTACAAGCCCCATCCGATGACGAGGTGTCGATTACGCTAGTA ATCGGTTATCTTGGAGCTGCCAACGTGTTGATTTTTCTGTGAGTTTTGAT CAGATCCTTTCGCGCTGTAGCCGCCCTTTGGTTTCGACACAGTCCACATG ACACTGTAGTTACCATACTTACTAATCGAACTTTTTGCTGATGTCATTGT CTTTCAAGAAACTCGAGAATATCGTAAGGGTGAAGGTTCAAATTGCACAA TAGGCACTCTAAAACAGAAGTTCGCATTACGATCTTAGTACTATTTTCGT GTGTTTTATGGTTTTGTTTGAATGTGTTTTATTTTACCCTCTTCATACCC AATGTCAACGTATTTTCGCCAAACAATCGCGCGCTCTAGGGGAAGCCCTC GCCGGCTCTAAAATTATGGTGCCCTGCTCGCGTATATCCCGCCCATCTCT TGGTATCAGACCACTACTGGTCGGCCTGGCGCTGGCACCCGGGACTCGCG TGCTGGAGGGTTTGACATATCACGTAGTGCAGCTCATCGTAGCCAGGGGA ATCTTCGACAACGTCTTATCAGAGCTCTGTGAGTGGAGACGTTCAAATCC GGCCCCGTGTTATGTACGGATTGAGCTCGAGAAAGCTGAGGAAATACATG TCTATGGTTGTGTACGTTGGTGGTCGGTGTACATGAAAACCTTATGGCGT TCCCCTCTCCAAGGTGTCCGAACCTTTGCGTCGCACGCACTGCCAACTTC TCTTACATTAATTGCCTTTCAGTTTGGGCCCGAGCTATTCTCCTCACCAC GGCAACAGTCGCTACTGTCGGGTGCTCGATTACCATCCCGATAGCCTTCG TCTCGGACTTCGTGCTGCACGGGAAGGTGCCCGACACGCTGTCGGTCGTT GGGGCGCTTTTGCTCATCGGAGGATTTATTTTCGTGAGCGAGAGGAAGAG TGCTCGTTCCAGCGGCGACTTCACTCAGGGTGGC
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Coding sequence (CDS) from alignment at H-elongata_contig66462:530..3113+

>mRNA_H-elongata_contig66462.14241.1 ID=mRNA_H-elongata_contig66462.14241.1|Name=mRNA_H-elongata_contig66462.14241.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1692bp|location=Sequence derived from alignment at H-elongata_contig66462:530..3113+ (Himanthalia elongata Himel1 dioecious)
ATGCTACGTGATTACGTTGGTCGTCGACAACATGTCACCAAGTACGCCTC
TGGATATAACCCGATCGGCGTCACGCCGCCCACAGGTCGTTCACCTTTGA
GGAGCCATATGTTTATGTTCAAGATAGGTTTGAGTCTTTCCGTCATTTGG
TTTCTGGCGCAGTGGAGCTACATCACCTCTTTGGCTCACACCAGATGCTA
CGTGATTACGTTGGTCGTCGACAACATGTCACCAAGTACGCCTCTGGATA
TAACCCGATCGGCGTCACGCCGCCCACAGGTCGTTCACCTTTGAGGAGCC
ATATGTTTATGTTCAAGATAGGTTTGAGTCTTTCCGTCATTTGGTTTCTG
GCGCAGTGGAGCTACATCACCTCTTTGGCTCACACCAGTGTGACAAGTAG
CACCATCATAGCAAACTCCTCGTCTCTCTTCACCTACATATTCAACGTCT
TGGCCCAAACGGAGCGGTTTACTCTTCGCAAGACAGGCGGCGTTGCTCTG
GCGCTGTTAGGAGCTGTCCTGTGTGACAAGTAGCACCATCATAGCAAACT
CCTCGTCTCTCTTCACCTACATATTCAACGTCTTGGCCCAAACGGAGCGG
TTTACTCTTCGCAAGACAGGCGGCGTTGCTCTGGCGCTGTTAGGAGCTGT
CCTGGTGGCACTCGCGGACAATGAGGAAGATAGCTCCGGGGATTCGCTTT
GGGGAGATGCGATGGCCCTCATCTCTGCGATCGCAGTGGCACTCGCGGAC
AATGAGGAAGATAGCTCCGGGGATTCGCTTTGGGGAGATGCGATGGCCCT
CATCTCTGCGATCGCATACGCGGTTTACACTATGATCCTGGCTGTACAAG
CCCCATCCGATGACGAGGTGTCGATTACGCTAGTAATCGGTTATCTTGGA
GCTGCCAACGTGTTGATTTTTCTTACGCGGTTTACACTATGATCCTGGCT
GTACAAGCCCCATCCGATGACGAGGTGTCGATTACGCTAGTAATCGGTTA
TCTTGGAGCTGCCAACGTGTTGATTTTTCTACCACTACTGGTCGGCCTGG
CGCTGGCACCCGGGACTCGCGTGCTGGAGGGTTTGACATATCACGTAGTG
CAGCTCATCGTAGCCAGGGGAATCTTCGACAACGTCTTATCAGAGCTCTA
CCACTACTGGTCGGCCTGGCGCTGGCACCCGGGACTCGCGTGCTGGAGGG
TTTGACATATCACGTAGTGCAGCTCATCGTAGCCAGGGGAATCTTCGACA
ACGTCTTATCAGAGCTCTTTTGGGCCCGAGCTATTCTCCTCACCACGGCA
ACAGTCGCTACTGTCGGGTGCTCGATTACCATCCCGATAGCCTTCGTCTC
GGACTTCGTGCTGCACGGGAAGGTGCCCGACACGCTGTCGGTCGTTGGGG
CGCTTTTGCTCATCGGAGGATTTATTTTCGTGAGCGAGAGGAAGAGTGCT
CGTTCCAGCGGCGACTTCACTCAGGGTGGCTTTGGGCCCGAGCTATTCTC
CTCACCACGGCAACAGTCGCTACTGTCGGGTGCTCGATTACCATCCCGAT
AGCCTTCGTCTCGGACTTCGTGCTGCACGGGAAGGTGCCCGACACGCTGT
CGGTCGTTGGGGCGCTTTTGCTCATCGGAGGATTTATTTTCGTGAGCGAG
AGGAAGAGTGCTCGTTCCAGCGGCGACTTCACTCAGGGTGGC
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