mRNA_H-elongata_contig66392.14235.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66392.14235.1
Unique NamemRNA_H-elongata_contig66392.14235.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66392.14235.1 vs. uniprot
Match: D7FXA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA9_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 1.890e-47
Identity = 102/201 (50.75%), Postives = 130/201 (64.68%), Query Frame = 1
Query:    1 QETSSEVASTVWEWPLFAAGRIWTESVMDMFAVQTYFSLEFLAFFETLLQIPRPVLV-----DDASL--PDLGHDGGVGVGDGGTCDSGGRVKRGNRSCEEEPQQKHQP--------------GQFDQIRV-SRAFVGKGYGELAKRLIMRGAMPLGLYRPSGTKQSILQYAHVNPDISEQLVEGDAVFVLKSLSCDVSGS 537
            +E+S+  ++ VWEWPLF AG +WTES+M++F VQTYFS EFLAFFETLLQ+ RPVLV     DDAS+  P +      G  D GT D+         +C ++P+ +H P              GQFD +RV SR F G  Y  LA+ LI++GAMPLGLYRP+GTK S L Y  VNP++SE+LVEGD  FVL+S SC + GS
Sbjct:  715 KESSALTSAGVWEWPLFTAGMVWTESIMEVFEVQTYFSTEFLAFFETLLQMKRPVLVGNELVDDASIMEPAVPPPASSGRDDDGTRDT----TPSAGACGKKPRSRHSPFRGQAGTASTVSPTGQFDMLRVASRKFWGGRYDALARELILQGAMPLGLYRPTGTKGSSLPYTQVNPEVSERLVEGDFAFVLRSRSCSLIGS 911          
BLAST of mRNA_H-elongata_contig66392.14235.1 vs. uniprot
Match: A0A6H5K4I5_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I5_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.460e-41
Identity = 97/205 (47.32%), Postives = 124/205 (60.49%), Query Frame = 1
Query:    1 QETSSEVASTVWEWPLFAAGRIWTESVMDMFAVQTYFSLEFLAFFETLLQIPRPVLV-----DDASL------PDLGHDGGVGVGDGGTCDSGGRVKRGNRSCEEEPQQKHQP--------------GQFDQIRV-SRAFVGKGYGELAKRLIMRGAMPLGLYRPSGTKQSILQYAHVNPDISEQLVEGDAVFVLKSLSCDVSGS 537
            +E+S+  ++ VWEWPLFAAG +WTES+M++F VQTYFS EFLAFFETLLQ+ R VLV     DDAS+      P       V      T  +G R K+        P  +H P              GQFD +RV S  F+G  Y  L + LI++GAMPLGLYRP+GTK S L Y  VNP++SE+LV+GD  FVL+S +C + GS
Sbjct: 1152 KESSALTSAGVWEWPLFAAGMVWTESIMEVFEVQTYFSTEFLAFFETLLQMKRLVLVGNELVDDASIMEPAVPPPASSGRDVDETRDTTPSAGARGKK--------PPSRHSPIRGQAGTASTVPPTGQFDMLRVASGKFLGGRYDALVRELILQGAMPLGLYRPAGTKGSSLPYTQVNPEVSERLVKGDFAFVLRSGTCSLVGS 1348          
BLAST of mRNA_H-elongata_contig66392.14235.1 vs. uniprot
Match: D7FWQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ5_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.400e-24
Identity = 77/205 (37.56%), Postives = 98/205 (47.80%), Query Frame = 1
Query:   40 WPLFAAGRIWTESVMDMFAVQTYFSLEFLAFFETLLQIPR---PVLVDDASLPDLGHD---------------------------------GGVGVGDGGTCDSGGRVKR-----GNRSCEEEPQQKHQPG-QFDQIRVSRAFVGKGYGELAKRLIMRGAMPLGLYRPSGTKQSILQYAHVNPDISEQLVEGDAVFVLKSLSCDV 528
            WPLFAAG +WT S+MD+FAV+TYF+   L+FFETLLQI     P    +A+                                        G V +GD G+    G  K      G+R  +++   ++Q   QF  +RVS +F GK YG+LA+ LI  GAMPLGLYRPSG K S L Y H+NP   E L         K  S  V
Sbjct:  199 WPLFAAGGVWTTSIMDVFAVRTYFNAHVLSFFETLLQIHARNPPASDSNANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAVSLGDKGSNAGDGEKKARPSHDGSRHWDDDDSTENQGRCQFAHLRVSASFAGKTYGDLARHLIALGAMPLGLYRPSGHKGSTLAYTHINPRPDEPLQPWPVTAAAKQASSGV 403          
BLAST of mRNA_H-elongata_contig66392.14235.1 vs. uniprot
Match: A0A6H5JQ48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ48_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.780e-18
Identity = 68/201 (33.83%), Postives = 83/201 (41.29%), Query Frame = 1
Query:   40 WPLFAAGRIWTESVMDMFAVQTYFSLEFLAFFETLLQIP--RPVLVDDASLPDLGHDGGVGVGDGGTCDSGGRVKRGNRSC------------------------------------EEEPQQKHQPGQFDQIRVSRAFVGKGYGELAKRLIMRGAMPLGLYRPSGTKQSILQYAHVNPDISEQLVEGDAVFVLKSLSCDV 528
            WPLFAAG +WT S+MD+FAV+TYF+   L+FFETLLQI    P   D                                                                      +++  +     QF  +RVS +F GK YG+LA+ LI  GAMPLGLYRPSG K S L Y H+NP   E L    A    K  S  V
Sbjct: 1139 WPLFAAGGVWTTSIMDVFAVRTYFNAHVLSFFETLLQIHARNPPASDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDSTENQGRCQFAHLRVSASFAGKTYGDLARHLIALGAMPLGLYRPSGHKGSTLAYTHINPRPDEPLKPWPAAAAAKQASSGV 1339          
BLAST of mRNA_H-elongata_contig66392.14235.1 vs. uniprot
Match: A0A7S4DB56_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB56_HETAK)

HSP 1 Score: 76.3 bits (186), Expect = 2.690e-13
Identity = 58/189 (30.69%), Postives = 94/189 (49.74%), Query Frame = 1
Query:    1 QETSSEVASTVWE------WPLFAAGRIWTESVMDMFAVQTYFSLEFLAFFETLLQIPRPVLVDDASLPDLGHDGGVGVGDGGTCDSGGRVKRGNRSCEEEPQQKHQPGQFDQIRVS----RAFVGKGYGELAKRLIMRG-AMPLGLYRPSGTKQSILQYAHVNPDISEQLVEGDAVFVLKSLSCDVSG 534
            Q+  ++VAS   E      WPLFAAGR+++ES++D+   + Y+S   +  +E +LQ+     +D   + +L  D           D    +  G     + P     PG  DQI +     RA +   Y +L + L+ R  A+ + LYRP+GT+ S+L Y  +NP  + +L + D VFVL +   D +G
Sbjct:   95 QQVFADVASRASENHQAASWPLFAAGRVFSESMLDILTARLYYSPLEIKLWEQILQVSPQAKLD--IIDELAGD---------DPDVAAALAGGAADDPDLPWAGALPGFLDQIEIEEGFLRAHLNPTYLDLVRFLLQRHRALAVALYRPAGTRGSLLPYVQINPPHNTELRQHDKVFVLNAPGSDFTG 272          
BLAST of mRNA_H-elongata_contig66392.14235.1 vs. uniprot
Match: A0A7S3Y312_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y312_HETAK)

HSP 1 Score: 76.3 bits (186), Expect = 6.320e-13
Identity = 58/189 (30.69%), Postives = 94/189 (49.74%), Query Frame = 1
Query:    1 QETSSEVASTVWE------WPLFAAGRIWTESVMDMFAVQTYFSLEFLAFFETLLQIPRPVLVDDASLPDLGHDGGVGVGDGGTCDSGGRVKRGNRSCEEEPQQKHQPGQFDQIRVS----RAFVGKGYGELAKRLIMRG-AMPLGLYRPSGTKQSILQYAHVNPDISEQLVEGDAVFVLKSLSCDVSG 534
            Q+  ++VAS   E      WPLFAAGR+++ES++D+   + Y+S   +  +E +LQ+     +D   + +L  D           D    +  G     + P     PG  DQI +     RA +   Y +L + L+ R  A+ + LYRP+GT+ S+L Y  +NP  + +L + D VFVL +   D +G
Sbjct:  370 QQVFADVASRASENHQAASWPLFAAGRVFSESMLDILTARLYYSPLEIKLWEQILQVSPQAKLD--IIDELAGD---------DPDVAAALAGGAADDPDLPWAGALPGFLDQIEIEEGFLRAHLNPTYLDLVRFLLQRHRALAVALYRPAGTRGSLLPYVQINPPHNTELRQHDKVFVLNAPGSDFTG 547          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66392.14235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FXA9_ECTSI1.890e-4750.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4I5_9PHAE1.460e-4147.32Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FWQ5_ECTSI1.400e-2437.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQ48_9PHAE1.780e-1833.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4DB56_HETAK2.690e-1330.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y312_HETAK6.320e-1330.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66392contigH-elongata_contig66392:1554..3015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionMIF4G-like, type 3
Ec32 orthologEc-21_004150.1
Hectar predicted targeting categoryother localisation
Exons2
Model size543
Cds size543
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931052.950745-CDS-H-elongata_contig66392:1553..20171622931052.950745-CDS-H-elongata_contig66392:1553..2017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66392 1554..2017 -
1691679678.7322564-CDS-H-elongata_contig66392:1553..20171691679678.7322564-CDS-H-elongata_contig66392:1553..2017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66392 1554..2017 -
1622931052.9866214-CDS-H-elongata_contig66392:2936..30151622931052.9866214-CDS-H-elongata_contig66392:2936..3015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66392 2937..3015 -
1691679678.7415817-CDS-H-elongata_contig66392:2936..30151691679678.7415817-CDS-H-elongata_contig66392:2936..3015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66392 2937..3015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66392.14235.1prot_H-elongata_contig66392.14235.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66392 1554..3015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66392.14235.1

>prot_H-elongata_contig66392.14235.1 ID=prot_H-elongata_contig66392.14235.1|Name=mRNA_H-elongata_contig66392.14235.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
QETSSEVASTVWEWPLFAAGRIWTESVMDMFAVQTYFSLEFLAFFETLLQ
IPRPVLVDDASLPDLGHDGGVGVGDGGTCDSGGRVKRGNRSCEEEPQQKH
QPGQFDQIRVSRAFVGKGYGELAKRLIMRGAMPLGLYRPSGTKQSILQYA
HVNPDISEQLVEGDAVFVLKSLSCDVSGSF*
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mRNA from alignment at H-elongata_contig66392:1554..3015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66392.14235.1 ID=mRNA_H-elongata_contig66392.14235.1|Name=mRNA_H-elongata_contig66392.14235.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1462bp|location=Sequence derived from alignment at H-elongata_contig66392:1554..3015- (Himanthalia elongata Himel1 dioecious)
CAGGAAACTTCGAGCGAAGTAGCATCGACTGTATGGGAATGGCCTCTGTT CGCCGCCGGAAGAATTTGGACAGAATCGGGTGAGAGTAACCCCAACCCCC TCTCTCCCTCCCCCCTCTTTCTCTCCCAAGGCGTTATCCTGTCAATTTTG TCCTTTGATTAAAACGCACCCGAGGCGGTATACACACTGTATGAGGTTCT TGTGTGAAAATGTGAATGTTGCCACTTGCGCTGTGACCTTTCTCCTCCGG GCGGGTGAGCTTCCGGAGTTTCATTCATTGCAAAGGCGTTCTTCTAACGA TTGGCATACTGAGTCTAATGGAGTGGAATGTGATGTGATGTGGTGTGGAG GAAGTCTTCCTCGTTCCTCGCGTAAAATGCATTGAAATGAACTGCACTAG TCTCTACTCGCTTCATGTTTTTCACACAGCACCCAAGCTGATCATATACC AATTGCGAACGGCCTGTACGCAAAGAAGTGACGACTCAGCAATAGCGGGG AGAGGGGGAGCGGGGGGATAACTTCGTAGCACTTCCGATGTCAGGGAGGG GGTTATTCCCTCCTCTAATGGGGTTGTGCTGCAACAGAACCACCAGGAGA TGCATCGTATCTTTCCCTAGGAGATACATCTTTCGCTACTTCCCCCCCTT GGACTCGCAGACGGGTTCGTCTACTCCCCATATCCACTCCTATCGTTGAA TCACTTGCGCATACGACTATAAATGGCCCGAAAGCTATCCGCGACCCCGC ACCTATTTCCCGCAATTTCAGACAAGCCCCGGGGATGACAGCCCCGGATT TCTTATCATTTGTTTGAAGCATGTATCTATATGCGCCGGATACCAGATTA TGCGGTCGCATACTGGGTTGGACATTACCTCCATTCCTTGATGCTGACCT CGTCTCTCTTGCTCTTATTACTCTTTGGTGGGGGGGCGCGGGGGGTGGCA CTCGGTTTGGCCCTTCCTGCGGCAAAACAATTTAAACAAACTCAAAAGTC ATGGACATGTTTGCGGTGCAGACTTACTTCAGCCTGGAATTCCTCGCCTT CTTCGAGACGCTCCTGCAGATCCCACGGCCCGTCCTCGTGGATGACGCGT CCCTGCCCGACCTTGGTCATGATGGTGGCGTAGGTGTAGGTGATGGTGGT ACTTGCGATAGCGGGGGGCGGGTGAAACGAGGCAATCGCAGCTGTGAGGA GGAGCCTCAGCAGAAGCACCAGCCGGGACAGTTTGACCAGATCCGAGTGT CGAGGGCGTTCGTAGGGAAGGGCTACGGCGAGCTCGCAAAGAGGCTAATC ATGCGGGGTGCCATGCCGCTGGGACTATACCGGCCGTCGGGCACGAAGCA GAGTATCTTACAGTACGCCCATGTGAACCCAGACATCTCCGAGCAGCTCG TGGAGGGGGACGCCGTCTTTGTGCTGAAGTCGCTGTCTTGTGATGTGTCC GGTAGTTTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig66392:1554..3015-

>mRNA_H-elongata_contig66392.14235.1 ID=mRNA_H-elongata_contig66392.14235.1|Name=mRNA_H-elongata_contig66392.14235.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig66392:1554..3015- (Himanthalia elongata Himel1 dioecious)
CAGGAAACTTCGAGCGAAGTAGCATCGACTGTATGGGAATGGCCTCTGTT
CGCCGCCGGAAGAATTTGGACAGAATCGGCAGGAAACTTCGAGCGAAGTA
GCATCGACTGTATGGGAATGGCCTCTGTTCGCCGCCGGAAGAATTTGGAC
AGAATCGGTCATGGACATGTTTGCGGTGCAGACTTACTTCAGCCTGGAAT
TCCTCGCCTTCTTCGAGACGCTCCTGCAGATCCCACGGCCCGTCCTCGTG
GATGACGCGTCCCTGCCCGACCTTGGTCATGATGGTGGCGTAGGTGTAGG
TGATGGTGGTACTTGCGATAGCGGGGGGCGGGTGAAACGAGGCAATCGCA
GCTGTGAGGAGGAGCCTCAGCAGAAGCACCAGCCGGGACAGTTTGACCAG
ATCCGAGTGTCGAGGGCGTTCGTAGGGAAGGGCTACGGCGAGCTCGCAAA
GAGGCTAATCATGCGGGGTGCCATGCCGCTGGGACTATACCGGCCGTCGG
GCACGAAGCAGAGTATCTTACAGTACGCCCATGTGAACCCAGACATCTCC
GAGCAGCTCGTGGAGGGGGACGCCGTCTTTGTGCTGAAGTCGCTGTCTTG
TGATGTGTCCGGTAGTTTTTGATCATGGACATGTTTGCGGTGCAGACTTA
CTTCAGCCTGGAATTCCTCGCCTTCTTCGAGACGCTCCTGCAGATCCCAC
GGCCCGTCCTCGTGGATGACGCGTCCCTGCCCGACCTTGGTCATGATGGT
GGCGTAGGTGTAGGTGATGGTGGTACTTGCGATAGCGGGGGGCGGGTGAA
ACGAGGCAATCGCAGCTGTGAGGAGGAGCCTCAGCAGAAGCACCAGCCGG
GACAGTTTGACCAGATCCGAGTGTCGAGGGCGTTCGTAGGGAAGGGCTAC
GGCGAGCTCGCAAAGAGGCTAATCATGCGGGGTGCCATGCCGCTGGGACT
ATACCGGCCGTCGGGCACGAAGCAGAGTATCTTACAGTACGCCCATGTGA
ACCCAGACATCTCCGAGCAGCTCGTGGAGGGGGACGCCGTCTTTGTGCTG
AAGTCGCTGTCTTGTGATGTGTCCGGTAGTTTTTGA
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