mRNA_H-elongata_contig66303.14230.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66303.14230.1
Unique NamemRNA_H-elongata_contig66303.14230.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66303.14230.1 vs. uniprot
Match: A0A6H5JCR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR3_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 5.550e-30
Identity = 98/195 (50.26%), Postives = 112/195 (57.44%), Query Frame = 2 
Query:   62 RVSNNGSRRESAMLL---EEDNFLEKARRCMLRAIGISSRKSVLAAESSSG-GSFRVGRT--VPETAEEIEAHQKIKVKMPRRPNKKAMEGAPGSTDLLWTDEQQ--SDEVVEEEGPSPRKDQ---------SSSNVINGIERWVFGSKPERVTP------KAKRVQGAAS--DVSPAPSQGSATKTIHDYVRAM 571
            +V    SRRESAMLL   +E+NF EKARRC+LRAIG+S +       S SG GS R G +  V ETA EI    KIKVKMP+RP KKAM+ A    D  W  EQQ  SD   E EG   + D          SSS VI+GIERWVFG K ER TP            GA+S  +VSPAP     T T+HDYVRAM
Sbjct:   82 QVDGPASRRESAMLLAAQQEENFFEKARRCVLRAIGVSRKSGQGEGGSFSGPGSMRGGTSPVVAETAAEIALRHKIKVKMPKRPGKKAMDRA-SVDDHPWDVEQQQGSDPFDESEGVIEKADDESGGYPNRASSSAVISGIERWVFGGKQERTTPIMSPNRNKPATAGASSTAEVSPAPG----TTTMHDYVRAM 271
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BLAST of mRNA_H-elongata_contig66303.14230.1 vs. uniprot
Match: D8LDG6_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG6_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.580e-23
Identity = 88/176 (50.00%), Postives = 100/176 (56.82%), Query Frame = 2 
Query:  116 NFLEKARRCMLRAIGISSRKSVLAAESS-SG-GSFRVGRT--VPETAEEIEAHQKIKVKMPRRPNKKAMEGAPGSTDLLWTDEQQS------------DEVVEEEGPSPRKDQSSSNVINGIERWVFGSKPERVTP--------KAKRVQGAASDVSPAPSQGSATKTIHDYVRAM 571
            NF EKARRC+LRAIG+S RKS    E S SG GS R G +  V ETA EI    KIKVKMP+RP KKAM+ A    D  W  EQQ             +E  EE G  P +  SSS VI+GIERWVFG K ER TP         A     + ++VSPAP     T T+HDYVRAM
Sbjct:  952 NFFEKARRCVLRAIGVS-RKSGQGEEGSFSGPGSMRGGNSPIVAETAAEIALRHKIKVKMPKRPGKKAMDRA-SVDDHAWDVEQQEGPDTFDEAEGVIEEADEESGGYPNR-ASSSAVISGIERWVFGGKQERTTPIMSPNRNKPATAGPSSTAEVSPAPG----TTTMHDYVRAM 1120
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66303.14230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCR3_9PHAE5.550e-3050.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDG6_ECTSI3.580e-2350.00Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66303contigH-elongata_contig66303:1079..3365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue1.7e-23
Seed eggNOG ortholog2880.D8LDG6
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size1264
Cds size477
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931052.226285-UTR-H-elongata_contig66303:1078..11751622931052.226285-UTR-H-elongata_contig66303:1078..1175Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66303 1079..1175 +
1691679678.3988087-UTR-H-elongata_contig66303:1078..11751691679678.3988087-UTR-H-elongata_contig66303:1078..1175Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66303 1079..1175 +
1622931052.3573766-UTR-H-elongata_contig66303:2675..33651622931052.3573766-UTR-H-elongata_contig66303:2675..3365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66303 2676..3365 +
1691679678.4566095-UTR-H-elongata_contig66303:2675..33651691679678.4566095-UTR-H-elongata_contig66303:2675..3365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66303 2676..3365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931052.2416894-CDS-H-elongata_contig66303:1175..11841622931052.2416894-CDS-H-elongata_contig66303:1175..1184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66303 1176..1184 +
1691679678.4122865-CDS-H-elongata_contig66303:1175..11841691679678.4122865-CDS-H-elongata_contig66303:1175..1184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66303 1176..1184 +
1622931052.2677484-CDS-H-elongata_contig66303:1410..15781622931052.2677484-CDS-H-elongata_contig66303:1410..1578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66303 1411..1578 +
1691679678.4208646-CDS-H-elongata_contig66303:1410..15781691679678.4208646-CDS-H-elongata_contig66303:1410..1578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66303 1411..1578 +
1622931052.2881784-CDS-H-elongata_contig66303:1814..19401622931052.2881784-CDS-H-elongata_contig66303:1814..1940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66303 1815..1940 +
1691679678.4295802-CDS-H-elongata_contig66303:1814..19401691679678.4295802-CDS-H-elongata_contig66303:1814..1940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66303 1815..1940 +
1622931052.3071384-CDS-H-elongata_contig66303:2110..21761622931052.3071384-CDS-H-elongata_contig66303:2110..2176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66303 2111..2176 +
1691679678.4381516-CDS-H-elongata_contig66303:2110..21761691679678.4381516-CDS-H-elongata_contig66303:2110..2176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66303 2111..2176 +
1622931052.34061-CDS-H-elongata_contig66303:2567..26751622931052.34061-CDS-H-elongata_contig66303:2567..2675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66303 2568..2675 +
1691679678.447384-CDS-H-elongata_contig66303:2567..26751691679678.447384-CDS-H-elongata_contig66303:2567..2675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66303 2568..2675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66303.14230.1prot_H-elongata_contig66303.14230.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66303 1176..2675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66303.14230.1

>prot_H-elongata_contig66303.14230.1 ID=prot_H-elongata_contig66303.14230.1|Name=mRNA_H-elongata_contig66303.14230.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
MLLEEDNFLEKARRCMLRAIGISSRKSVLAAESSSGGSFRVGRTVPETAE
EIEAHQKIKVKMPRRPNKKAMEGAPGSTDLLWTDEQQSDEVVEEEGPSPR
KDQSSSNVINGIERWVFGSKPERVTPKAKRVQGAASDVSPAPSQGSATKT
IHDYVRAM*
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mRNA from alignment at H-elongata_contig66303:1079..3365+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66303.14230.1 ID=mRNA_H-elongata_contig66303.14230.1|Name=mRNA_H-elongata_contig66303.14230.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2287bp|location=Sequence derived from alignment at H-elongata_contig66303:1079..3365+ (Himanthalia elongata Himel1 dioecious)
CAAGCTGGCGCACAAGAACGGAGTGCATGAGTCTGCGGATCCTTTGTGTT
GTGTTAGTGGTCGCGTTAGCAATAACGGTTCTCGAAGGGAGAGCGCTATG
CTTCTGGTGAGCGCGCTTGATGGATTTCCTTTCACAAGAAATGTTGCCAA
GAAAGCCTAATCTAAACGTGTGTCATTAAAAGGCGTTCTTGAGGAGGGAA
GAGGGGATGTATACGGTACTGCGCTGTTAAATAAGGTAAACTTTTTGGTT
GACTTAAAGTGTAAGTTTGTTCGTAACCAACAAAATAATTATTTTTCTAT
CCCTACCCCCGCCTACTTGGTGCCGGGGGCAGGAGGAAGACAACTTCCTC
GAAAAGGCGCGTCGCTGCATGCTTCGTGCCATCGGGATCAGCTCTCGCAA
GAGTGTCCTCGCCGCAGAGTCTTCTTCCGGAGGTTCGTTCCGCGTGGGAA
GGACGGTGCCCGAAACGGCCGAAGAGATCGAGGCCCATCAGAAGATTAAG
GTCAGCATAATGAGGCGTTTTCTTACAGGGAGCAAGGGATACAAATAATA
TTCCAGACCTACAGTTCGTGATTATCAAGCTCTTTCGATATTATTTCTTG
TAAACCCTGGTTGATAAAGCGGTAAGGTAAGGCCGGGTCTTATCGGAGTT
TAAATTTGTATCCCCGTTAATACCCAGCCTAATCCTTTTTTCGGGTTGGT
TCATGAAAGAGTAGCGTTTTTGTTTCGTGGCACCAGGTTAAGATGCCCAG
ACGCCCCAACAAGAAGGCAATGGAGGGGGCTCCAGGCAGTACCGATCTTC
TCTGGACGGACGAACAACAGTCGGATGAGGTCGTTGAAGAGGAAGGTCCA
TCTCCCCGCAAGGTGTTAACCATTATGTTTTAGAGGAAATCCTTTCAGTG
AATATAGGAATATCGCGGCGGGACATGCTAAATATTAGAGTTTTGCACGG
GGTATTTGGGGGACGAAAACGTGAGGCAAGCAGTGTCACTCAACTTTTTT
TTTTTTGTGCGTATATCCGTTCGTGCGGCTAGGACCAATCATCATCGAAC
GTGATTAACGGCATCGAGCGCTGGGTGTTTGGAAGCAAGCCGGAGCGGGT
GAGTCCCTACCTCCTCTCTCTCTAAATAATAATAAATATATATATATCCT
CAAAGCAACACCTTCATTCAAGCTACACATAACAAGGAGCACAAATTTGT
TTTCAATAATCATGTTCCGAGTAAAATGTGTTGAGCTAAAGCTGTGAAAT
GAGTCGGTCGCGGTAAGCCGTAAAGGATTGATTTTTTGTTCACTTTGAAG
TTTGCCAGAAGAGTAAACTTCATTTGCCATTAGAAATAAAATGATTTGTA
GGCCTGCGTCAACCGGGTAGAGAGATAGGACATCCCCTTAGGCCCACAGG
TGGGATAATAGCTCCTATCGACTGAATGTGTGATACGAACTTCACCAACA
TAAGAGTTATTCTTCGTGCCTCGTCTTCGTCGACAAAAGGTTACCCCCAA
GGCTAAAAGGGTTCAGGGCGCGGCGTCGGACGTCAGCCCGGCGCCCTCGC
AGGGATCAGCGACCAAAACTATTCACGACTACGTGAGGGCCATGTAATGA
GATGTCAGCGGTCGTTCGTACCCTACACGAGCGTATGGGTTGTTTGGAAT
CATCGTGAGGCATACTTTATGCTCTACGGTTGTACTGTAGCGCAGTAGTA
TTATCGGTGCCAAGGAAGGAGGGTGGGCGGGGTTTCGACCATAGTATGGC
GGGTTGAATAAGTCGGAAAGATGGCGGGTTGAGGCGGCGTAGTATTATTT
TCCGCGTGCTAAGAGCGTCGCGTAGTTAAACCGTCATGAAGTCAGGGTTT
TAGCTCAAGGCTTTGTTCTAAATGATTTATTGACCAGTTTGTTTGCAGCG
GAATTGTTTCGTGTTGTAGGGCGTACGTGGACGGGGAGACGCTGTGTTGA
GGCAATGGAGGCTTAGTATTTTACAGTTAAGATAGTTAACGAAATTAAAT
TGGGGCAATAAGGTTATCCTCGTAAAGCGCGGCGGATGAGCGAATATGAA
AGGATTTGCTGTGCACGATATTTTGTGTATTTTGTGTAATTTCGTTGCTT
GGCTGTATCGCTCGGTGACACGTACGTTCACACCCTCCGTTATCTTGGTG
GTAAGAAAAGCCACATCGTGTAGAACTCTGCCGGGACAAGGCGCCGACCG
CGTACCCCGCGCAGACGAGTGCACTCTCGTTTATGTCGATGTAAAAGAGT
AGGCCGCGTTATTTTTCTGACTGACAGACTAAGTTTA
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Coding sequence (CDS) from alignment at H-elongata_contig66303:1079..3365+

>mRNA_H-elongata_contig66303.14230.1 ID=mRNA_H-elongata_contig66303.14230.1|Name=mRNA_H-elongata_contig66303.14230.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig66303:1079..3365+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCTGATGCTTCTGGAGGAAGACAACTTCCTCGAAAAGGCGCGTCG
CTGCATGCTTCGTGCCATCGGGATCAGCTCTCGCAAGAGTGTCCTCGCCG
CAGAGTCTTCTTCCGGAGGTTCGTTCCGCGTGGGAAGGACGGTGCCCGAA
ACGGCCGAAGAGATCGAGGCCCATCAGAAGATTAAGGAGGAAGACAACTT
CCTCGAAAAGGCGCGTCGCTGCATGCTTCGTGCCATCGGGATCAGCTCTC
GCAAGAGTGTCCTCGCCGCAGAGTCTTCTTCCGGAGGTTCGTTCCGCGTG
GGAAGGACGGTGCCCGAAACGGCCGAAGAGATCGAGGCCCATCAGAAGAT
TAAGGTTAAGATGCCCAGACGCCCCAACAAGAAGGCAATGGAGGGGGCTC
CAGGCAGTACCGATCTTCTCTGGACGGACGAACAACAGTCGGATGAGGTC
GTTGAAGAGGAAGGTCCATCTCCCCGCAAGGTTAAGATGCCCAGACGCCC
CAACAAGAAGGCAATGGAGGGGGCTCCAGGCAGTACCGATCTTCTCTGGA
CGGACGAACAACAGTCGGATGAGGTCGTTGAAGAGGAAGGTCCATCTCCC
CGCAAGGACCAATCATCATCGAACGTGATTAACGGCATCGAGCGCTGGGT
GTTTGGAAGCAAGCCGGAGCGGGACCAATCATCATCGAACGTGATTAACG
GCATCGAGCGCTGGGTGTTTGGAAGCAAGCCGGAGCGGGTTACCCCCAAG
GCTAAAAGGGTTCAGGGCGCGGCGTCGGACGTCAGCCCGGCGCCCTCGCA
GGGATCAGCGACCAAAACTATTCACGACTACGTGAGGGCCATGTAAGTTA
CCCCCAAGGCTAAAAGGGTTCAGGGCGCGGCGTCGGACGTCAGCCCGGCG
CCCTCGCAGGGATCAGCGACCAAAACTATTCACGACTACGTGAGGGCCAT
GTAA
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