mRNA_H-elongata_contig6628.14227.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6628.14227.1 vs. uniprot
Match: D7FKI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI0_ECTSI) HSP 1 Score: 308 bits (790), Expect = 1.600e-99 Identity = 154/199 (77.39%), Postives = 176/199 (88.44%), Query Frame = 1
Query: 1 VDPDLRGFNGGFLYDTKAYFVPSNNGRGAGAKFVRVSANNFSIDSVEVLDLRSVDPEVGGFFGGFAWQGYGYLVPSRSFQGPIGGVNSNLSADGFGSASAFLGY---GYSATQKPAGRLQPSYSGKLVRVDLNEFSLSGVEVLDLTMVDPELCGFAGGFAAGHWGFLVPFKHSESDGGFSGKILRFDLRTFDYAGVTVR 588
VDPDLRGF+GGFL+ +KAYFVPS NGRGAGAKFVRV A+NFS +SVEVLDL +VDPEVGGFFGGFAW+GYGYLVP RSFQGP+GGVN+NLSADGF +S+FLG G + QK AGRLQP+YSGKLVRVDL++FS SGV+VLDLT VDP+L GF GGFAAGHWGFLVPFK+ E+DG FSGK++RFDLRTFD+A VTVR
Sbjct: 382 VDPDLRGFSGGFLHASKAYFVPSYNGRGAGAKFVRVDASNFSSNSVEVLDLHTVDPEVGGFFGGFAWEGYGYLVPCRSFQGPVGGVNTNLSADGFAWSSSFLGSDSTGRGSGQK-AGRLQPAYSGKLVRVDLSDFSSSGVQVLDLTEVDPDLRGFTGGFAAGHWGFLVPFKNKEADGEFSGKMVRFDLRTFDHASVTVR 579
BLAST of mRNA_H-elongata_contig6628.14227.1 vs. uniprot
Match: A0A6V1PSV2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PSV2_HETAK) HSP 1 Score: 147 bits (370), Expect = 3.960e-39 Identity = 81/189 (42.86%), Postives = 113/189 (59.79%), Query Frame = 1
Query: 13 LRGFNGGFLYDTKAYFVPSNNGRGAG---AKFVRVSANNFSIDSVEVLDLRSVDPEVGGFFGGFAWQGYGYLVPSRSFQGPIGGVNSNLSADGFGSASAFLGYGYSATQKPAGRLQPSYSGKLVRVDLNEFSLSGVEVLDLTMVDPELCGFAGGFAAGHWGFLVPFKHSES-DGGFSGKILRFDLRTFD 567
LRGF GGF + Y VP+ +GR + A RV A F+ VE L+L D VGG++GG + GYLVP R+ GPIGG++S +ADG+ A A L + G L+ YSG ++R++L FS+ VE LDL + P+L GFAGGF G +G+LVP+K+ E +GG G +++ DL TF+
Sbjct: 23 LRGFAGGFAHGGFVYLVPAADGRESSTPVAHLARVRAGQFNASGVEWLELSEYDTHVGGYYGGLVYGDSGYLVPHRTNIGPIGGIHSRYTADGYKPAPAHL----PRLEAGGGHLEAEYSGAVLRLNLTAFSVDAVEHLDLADLHPDLRGFAGGFVVGKYGYLVPYKNQERLEGGHHGNLVKLDLETFE 207
BLAST of mRNA_H-elongata_contig6628.14227.1 vs. uniprot
Match: A0A7S2G8C2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G8C2_9STRA) HSP 1 Score: 125 bits (314), Expect = 3.300e-33 Identity = 71/158 (44.94%), Postives = 90/158 (56.96%), Query Frame = 1
Query: 1 VDPDLRGFNGGFLYDTKAYFVPSNNGRGAGAKFVRVSANNFSIDSVEVLDLRSVDPEVGGFFGGFAWQG-----YGYLVPSRSFQGPIGGVNSNLSADGFGSASAFLGYGYSATQKPAGRLQPSYSGKLVRVDLNEFSLSGVEVLDLTMVDPELCGFA 459
VDPDLRGF GGF AYFVP +G G K VRV+ F+ + V+V+DL +D E+ G+FGGF ++ YGYLVP R+ + P+ GVN + DG+ G + L+ Y GKLVR D F SGV VLDLT DP+L GFA
Sbjct: 6 VDPDLRGFAGGFASGDYAYFVPFFDGYKYGRKVVRVNIETFTAEDVQVIDLGPLDQELAGYFGGFTYRNIAGINYGYLVPHRNVRAPVDGVNPFYTVDGYTDEVVNKG----RSSMGGDHLETHYHGKLVRFDCENFDASGVTVLDLTEYDPDLRGFA 159
BLAST of mRNA_H-elongata_contig6628.14227.1 vs. uniprot
Match: A0A7S2DPP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPP0_9STRA) HSP 1 Score: 116 bits (291), Expect = 7.160e-30 Identity = 68/153 (44.44%), Postives = 90/153 (58.82%), Query Frame = 1
Query: 28 GGFLYDTKAYFVPSNNGRGAGAKFVRVSANNFSIDSVEVLDLRSVDPEVGGFFGGFAW---------QGYGYLVPSRSFQGPIGGVNSNLSADGFGSASAFLGYGYSATQKPAGRLQPSYSGKLVRVDLNEFSLSGVEVLDLTMVDPELCGFA 459
GGF+Y Y VP +G G K RV +F D V VLDL V ++ GFFGGFA+ + YGYLVP RS +GPI GVN++ + DGF S ++ S+ L Y G+LVR+DL++F+ SGV VLDL++ DP+L GFA
Sbjct: 1 GGFVYGDYLYLVPFFDGHQYGHKVARVHMEHFDADHVHVLDLWEVSTDLAGFFGGFAYTTQSAGGDSKPYGYLVPHRSMEGPIDGVNTDFTVDGF--TSEYVNRRRSSMG--GDHLTAHYHGRLVRIDLDDFTASGVSVLDLSVYDPDLRGFA 149
BLAST of mRNA_H-elongata_contig6628.14227.1 vs. uniprot
Match: A0A6H5KG48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG48_9PHAE) HSP 1 Score: 103 bits (256), Expect = 2.010e-24 Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 1
Query: 394 FSLSGVEVLDLTMVDPELCGFAGGFAAGHWGFLVPFKHSESDGGFSGKILRFDLRTFDYAGVTV 585
+ + V+VLDLT VDP+L GF GGFAAGHWGFLVPFK+ E+DG FSGK++RFDLRTFD+AGVTV
Sbjct: 6 YFVHAVKVLDLTEVDPDLRGFTGGFAAGHWGFLVPFKNKEADGEFSGKMVRFDLRTFDHAGVTV 69
BLAST of mRNA_H-elongata_contig6628.14227.1 vs. uniprot
Match: R1E373_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E373_EMIHU) HSP 1 Score: 99.0 bits (245), Expect = 1.440e-20 Identity = 73/214 (34.11%), Postives = 100/214 (46.73%), Query Frame = 1
Query: 1 VDPDLRGFNGGFLYDTKAYFVPSNNGRGAGAKFVRVSANNFSIDSVEVLDLRSVDPEVGGFFGGFAWQGYGYLVPSRSFQGPIG-------------GV--------NSNLSADGFGSASAFLGYGYSATQKPAGRLQPSYSGKLVRVDLNEFSLSGVEVLDLTMVDPELCGFAGGFAAGHWGFLVPFKHSESDGGFSGKILRFDLRTFDYAGV 579
+ +L+GF GG++ DT AY+VP +NG RVS ++FS VE L+L +P + GFFGGFA + Y +P+++ G G GV NSNL GF A + Y K S G RV+L++FS SGVE L+L + L GF GFA + P+ + G SG R L F +GV
Sbjct: 697 TNSNLKGFQGGYVTDTHAYYVPYSNGAAYSGYAARVSLSDFSSSGVEYLNLADTNPNLKGFFGGFATDAHAYYLPNKNDGGRNGYAARVSLSDFSNSGVEYLNLADTNSNLK--GFNGGFATDAHAYFVPDKNG-----SPHGYAARVNLSDFSSSGVEYLNLADTNSNLRGFGRGFATDAHAYYAPWDY----GARSGYAARVSLSDFSSSGV 899
BLAST of mRNA_H-elongata_contig6628.14227.1 vs. uniprot
Match: R1DVF0_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DVF0_EMIHU) HSP 1 Score: 95.1 bits (235), Expect = 2.530e-19 Identity = 73/200 (36.50%), Postives = 99/200 (49.50%), Query Frame = 1
Query: 1 VDPDLRGFNGGFLYDTKAYFVPSNNGRGAGAKFVRVSANNFSIDSVEVLDLRSVDPEVGGFFGGFAWQGYGYLVPSRSFQGPIGGVNSNLSADGFGSA-----------SAFLGY-GYSATQKPAGRL---QPSYSGKLVRVDLNEFSLSGVEVLDLTMVDPELCGFAGGFAAGHWGFLVPFKHSESDGGFSGKILRFDL 555
+ +L+GF GGF+ DT AY+VP NG +G VRVS ++FS VE L+L + + GF GGFA + Y VPS + G + +S F S+ S G+ G AT A + + SG VRV L++FS SGVE L+L + L GF GGFA + VP +G +SG R L
Sbjct: 335 TNSNLKGFAGGFVTDTHAYYVPQYNGAYSGYA-VRVSLSDFSSSGVEYLNLADTNSNLKGFRGGFATDAHAYYVPSYNSAPNFHGYAARVSLSDFSSSGVEYLNLADTDSNLKGFDGGFATDAHAYYVPFNNGAKSGYAVRVSLSDFSSSGVEYLNLADTNSNLKGFGGGFATAAHAYYVP----HHNGAYSGYAARVSL 529
BLAST of mRNA_H-elongata_contig6628.14227.1 vs. uniprot
Match: A0A7S4E8S4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8S4_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 2.310e-11 Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 358 YSGKLVRVDLNEFSLSG---VEVLDLTMVDPELCGFAGGFAAGHWGFLVPFKHSESDGGFSGKILRFDLRTFDYAGV 579
+ GKLVR+ L +F +G +VLDLT +DP+L GFAGG G +G LVP+K+ D GF GK+++ DL F V
Sbjct: 793 FHGKLVRLHLADFESTGDAPFDVLDLTEIDPDLRGFAGGSVVGRYGLLVPYKNRVGDDGFFGKLVKVDLEAFTVEAV 869
BLAST of mRNA_H-elongata_contig6628.14227.1 vs. uniprot
Match: A0A225WUN7_9STRA (Apple domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WUN7_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 7.150e-11 Identity = 69/226 (30.53%), Postives = 93/226 (41.15%), Query Frame = 1
Query: 19 GFNGGFLYDTKAY----FVPSNNGRGAGAKFVRVSANNFSIDSVEVLDLRSVDPEVGGFFGGFAWQGYGYLVPSRSFQ-------GPIGGVNS-------------NLSADGFGSASAFLGYGY----------SATQKPAGRLQPSYSGKLVRVDLNEFSLSGVEVLDLT---------MVDPELCGFAGGFAAGHWGFLVPFKHSESDGGFSGKILRFDLRTFD 567
GF+ F D F SN+G VR+ FS+++ LDL + P++ GF G + Y VP P G+ + NL+A G G+ Y S KP G Q SGK+ R+D N FS SGV LDLT D L GF GGF +G +GF VP+ + + FSGK+ R +L F+
Sbjct: 433 GFSSAFTCDELTQNLREFPVSNSGL-----VVRIDLRTFSVNAS--LDLTTFHPDLCGFSGAVLVTHFAYFVPYMRVNEPDSVEVNPYSGLMARLDLHDFTSVQYLNLTAVNNGLRGFMRGFAYRQYVFLVPHRSRFTKPKGSTQ---SGKVARIDTNNFSPSGVSYLDLTTTLRSQVPDFADVNLRGFHGGFVSGKYGFFVPYFNGAT---FSGKVCRINLDKFE 645
BLAST of mRNA_H-elongata_contig6628.14227.1 vs. uniprot
Match: K3WK48_GLOUD (Apple domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WK48_GLOUD) HSP 1 Score: 70.5 bits (171), Expect = 9.810e-11 Identity = 67/214 (31.31%), Postives = 91/214 (42.52%), Query Frame = 1
Query: 58 FVPSNNGRGAGAKFVRVSANNFSIDSVEVLDLRSVDPEVGGFFGGFAWQGYGYLVP-------SRSFQGPIGGVNSNLSADGFGSASAFL--------------GYGY----------SATQKPAGRLQPSYSGKLVRVDLNEFSLSGVEVLDLT---------MVDPELCGFAGGFAAGHWGFLVPFKHSESDGGFSGKILRFDLRTFDYAGV 579
F SN+G VRV+ F+ + + L+L + PE+ GF GG + YLVP S P + + F S A+L G+ Y S P + Q SGK+VR+D +FS GV VLDL + D L GF+GGF +G +GF VPF + FSGK+ R +L FD V
Sbjct: 487 FPVSNSGL-----LVRVNLETFA--TADALNLTATHPELVGFSGGVQVTNFAYLVPYMRRKVPSPQELNPYASFVARVDLRDFSSV-AYLNLAEVDDDLRGFIRGFAYKQYVILSPSRSRFYSPGTKAQ---SGKVVRLDTEQFSTRGVSVLDLATAFRSQVPNLPDDSLRGFSGGFVSGKYGFFVPFFDGAT---FSGKVCRINLEKFDEVQV 686 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6628.14227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6628.14227.1 >prot_H-elongata_contig6628.14227.1 ID=prot_H-elongata_contig6628.14227.1|Name=mRNA_H-elongata_contig6628.14227.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp VDPDLRGFNGGFLYDTKAYFVPSNNGRGAGAKFVRVSANNFSIDSVEVLDback to top mRNA from alignment at H-elongata_contig6628:459..1919+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6628.14227.1 ID=mRNA_H-elongata_contig6628.14227.1|Name=mRNA_H-elongata_contig6628.14227.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1461bp|location=Sequence derived from alignment at H-elongata_contig6628:459..1919+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6628:459..1919+ >mRNA_H-elongata_contig6628.14227.1 ID=mRNA_H-elongata_contig6628.14227.1|Name=mRNA_H-elongata_contig6628.14227.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig6628:459..1919+ (Himanthalia elongata Himel1 dioecious)back to top |