mRNA_H-elongata_contig66269.14226.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: D7G8E9_ECTSI (Mef2, mitochondrial translation elongation factor EF-G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E9_ECTSI) HSP 1 Score: 455 bits (1170), Expect = 3.240e-151 Identity = 245/341 (71.85%), Postives = 276/341 (80.94%), Query Frame = 1
Query: 1 QGSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTPEILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDRPRPSGVIPRVSGGRGKGGKAVARRGSSGGGGKDGAEAIVEDVEDGDVVDVDPLDNELVALVFK 1023
QGSVDSGDT+TDFMPQERERGITIQSAAVTVEWGGGRIN+IDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNK+DR+GA HV+ TLERRLGV PLPLQ+PVG+GTDFVGMVDLVTMTA+LYQAG GL +MRA+ARDSV+FVTL LD A+ IFPGT++ A AR ELLWALA+ DE FAELVL+RD G S+D ++ Y+ PEIL+AVRRVCL+R+AVP+LCG+SLRGIGVEPLLDSVS FLPSPLDRPRP+GV+ + G A E E G V +VDPL ++LVA VFK
Sbjct: 108 QGSVDSGDTVTDFMPQERERGITIQSAAVTVEWGGGRINVIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKLDRQGADFKHVLGTLERRLGVLPLPLQIPVGTGTDFVGMVDLVTMTAILYQAGADGLGKMRASARDSVTFVTLPLDHANDIFPGTVKRANAARQELLWALADADEAFAELVLERDQR--GGGGSDDANDDLYSLPEILSAVRRVCLSRAAVPVLCGSSLRGIGVEPLLDSVSTFLPSPLDRPRPTGVVREPASRSGXXXXXXXXXXXXXXXXXXXXXAGTE--EGGAVFEVDPLQDDLVAFVFK 444
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: A0A6H5KKP4_9PHAE (Tr-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKP4_9PHAE) HSP 1 Score: 342 bits (877), Expect = 1.190e-109 Identity = 203/346 (58.67%), Postives = 231/346 (66.76%), Query Frame = 1
Query: 4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTPEILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDRPRPSGVIPRVSGGRGKGGKAVARRGSSGGGG---KDGAEAIVEDVEDGDVVDVDPLDNELVALVFKVIR 1032
GSVDSGDT+TDFMPQERERGITIQSAAVTVEWGGGRIN+IDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQT GMVDLVTMTAVLYQAG GL +MRA+ARDSV+FVTL LD A+ IFPGT++ A AR ELLWALA+ DE FAELVL+RD G S++ ++ Y+ PEIL+AVRRVCLAR+AVP+LCG+SLRGIGVEPLLDSVS FLPSPLDRPRP+GV+ + G G G GAEA + E G + +VDPL ++LVA VFKV+R
Sbjct: 2 GSVDSGDTVTDFMPQERERGITIQSAAVTVEWGGGRINVIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQT---------------------------------------------------------GMVDLVTMTAVLYQAGADGLGKMRASARDSVTFVTLPLDHANDIFPGTVKRANAARQELLWALADADEVFAELVLERDQR--GGGGSDNANDDLYSLPEILSAVRRVCLARAAVPVLCGSSLRGIGVEPLLDSVSTFLPSPLDRPRPTGVVREPASRSGXXXXXXXXXXXGEGAGVRAAGGAEAAGTE-EGGAIFEVDPLQDDLVAFVFKVLR 287
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: A0A835ZDB5_9STRA (Mef2, mitochondrial translation elongation factor EF-G n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDB5_9STRA) HSP 1 Score: 314 bits (804), Expect = 2.020e-97 Identity = 169/292 (57.88%), Postives = 202/292 (69.18%), Query Frame = 1
Query: 1 QGSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTPEILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDRPRPSGVIPRVSGGR 876
QGSVD+GDT+TDFMPQERERGITIQSAAV+VEW G +NLIDTPGHVDF +EVER RVLDGAVLVLD VAGVQAQTETVWRTA H +PAIAFVNKMDR+GA V+TL RLGV PLP+Q+P+GS F G VDL+ M ++YQ G R D+V + L + + PG +A AR ELL +A DE F + L SE G Y +L A+RR+CLA++ +P+LCGA+LRGIGVEPLLDS AFLPSPLDRP +GV+P +GG+
Sbjct: 34 QGSVDTGDTVTDFMPQERERGITIQSAAVSVEWNGHHVNLIDTPGHVDFSIEVERAVRVLDGAVLVLDAVAGVQAQTETVWRTATSHNVPAIAFVNKMDRQGADFNIAVQTLRNRLGVTPLPIQLPIGSEGGFKGAVDLIAMEGLVYQPGG----RWEGDV-DTVELRRVALGELEGGCPGLSAAAAAARAELLMGMAEADEAFMDTYL-----------SEGEAQGAYDVQTLLGALRRICLAQAGIPVLCGAALRGIGVEPLLDSAIAFLPSPLDRPPATGVLPANAGGQ 309
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: A0A4D9DDG5_9STRA (Tr-type G domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDG5_9STRA) HSP 1 Score: 278 bits (712), Expect = 3.510e-83 Identity = 156/286 (54.55%), Postives = 196/286 (68.53%), Query Frame = 1
Query: 4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQA------GPYGLTRMRAAA-RDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTP--EILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDR 834
G VD+GDT+ DF+PQERERGITIQSAA++++W RIN+IDTPGHVDF +EVER R+LDGA +V+D VAGVQAQTETVWR A+K+++P IAFVNKMDR+GA V++L RRLG +P+Q+P+G+G DF G+VDL+TM V+++A P LT + R SV L DK L +A EAR LL ALA+ DE F E L+R E + E+G G P +LAA+RR LA VP LCGASL+G GVEPLLDS++AF PSPLDR
Sbjct: 85 GDVDTGDTVMDFLPQERERGITIQSAAISLDWHDTRINIIDTPGHVDFTMEVERAVRILDGAAVVVDAVAGVQAQTETVWRQARKYKVPTIAFVNKMDRDGADFPRAVQSLRRRLGAPAVPVQLPLGAGGDFQGVVDLLTMEEVVWEAPQTSGTNPSPLTPFAPKSKRRSVCLTRRPLAGGDKTKEERLMAAREARVALLEALADADETFMETYLERLDE-----AGEEGLGGTEQLPLVTVLAAIRRASLAGLLVPTLCGASLKGKGVEPLLDSIAAFCPSPLDR 365
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: W7TIG4_9STRA (Translation elongation factor g n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIG4_9STRA) HSP 1 Score: 278 bits (712), Expect = 1.270e-81 Identity = 157/286 (54.90%), Postives = 196/286 (68.53%), Query Frame = 1
Query: 4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQA------GPYGLTRMRAAA-RDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTP--EILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDR 834
G VD+GDT+ DF+PQERERGITIQSAA++++W RIN+IDTPGHVDF +EVER RVLDGA +V+D VAGVQAQTETVWR A+K+++P IAFVNKMDR+GA V++L RRLG +P+Q+P+G+G DF G+VDL+TM V+++A P LT + R SV L DK L +A EAR LL ALA+ DE F E L+R E + E+G G P +LAA+RR LA VP LCGASL+G GVEPLLDS++AF PSPLDR
Sbjct: 85 GDVDTGDTVMDFLPQERERGITIQSAAISLDWHDTRINIIDTPGHVDFTMEVERAVRVLDGAAVVVDAVAGVQAQTETVWRQARKYKVPTIAFVNKMDRDGADFPRAVQSLRRRLGAPAVPVQLPLGAGGDFQGVVDLLTMEEVVWEAPQTSGKNPSPLTPSAPKSKRRSVCLTRRPLAGGDKTKEERLMAAREARVALLEALADADETFMETYLERLDE-----AGEEGLGGTEQLPLVTVLAAIRRASLAGLLVPTLCGASLKGKGVEPLLDSIAAFCPSPLDR 365
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: A0A556UXX2_BAGYA (Ribosome-releasing factor 2, mitochondrial n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556UXX2_BAGYA) HSP 1 Score: 264 bits (674), Expect = 1.090e-78 Identity = 143/278 (51.44%), Postives = 188/278 (67.63%), Query Frame = 1
Query: 4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTP-EILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDR 834
G VD GDT+TD+M QERERGITIQSAAVT +W RINLIDTPGHVDF LEVER RVLDGAV V D AGV+AQT TVWR A+KH IP I F+NKMD+ GA +++ V +++ RL V+PLPLQ+P+GSG FVG+VDL+T + + R + A D +F T + +D P L +AR L+ +A++D+EFAEL+L E GDN D ++ AVRR+ L+R VP+LCG+SL+ GV+PLLD+++A+LP+P +R
Sbjct: 26 GDVDDGDTVTDYMAQERERGITIQSAAVTFDWNQHRINLIDTPGHVDFTLEVERALRVLDGAVAVFDAAAGVEAQTMTVWRQAEKHNIPCICFLNKMDKPGASMSYSVESIKTRLKVNPLPLQIPIGSGKGFVGLVDLITKQRITW--------RGNSGAGDGRAFETSAIQPSDD--PEFLEKCNQARANLIEQVADLDDEFAELLL-----------GEYGDNFDSVPAVKLQEAVRRLTLSRKGVPVLCGSSLKNKGVQPLLDAITAYLPAPDER 282
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: A0A6I8PPS3_ORNAN (Tr-type G domain-containing protein n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8PPS3_ORNAN) HSP 1 Score: 256 bits (654), Expect = 3.110e-78 Identity = 143/278 (51.44%), Postives = 184/278 (66.19%), Query Frame = 1
Query: 4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTPEIL-AAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDR 834
G VD GDT+TDFM QERERGITIQSAAVT +W G R+NLIDTPGHVDF LEVER RVLDGAV V D AGV+AQT TVW+ A KH IP I F+NKMD+ GA + + ++ +L PL LQ+P+G FVG+VD+VT V+++ + D F L + + P L+ A++AR+ L+ +A++D+EFAELVL E +N D + E L AAVRRV LAR+AVP+LCG+SLR GV+PLLD+V+ +LPSP +R
Sbjct: 56 GDVDEGDTVTDFMAQERERGITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERSLRVLDGAVAVFDASAGVEAQTLTVWKQADKHHIPRICFLNKMDKTGASFTYAIESIREKLKAKPLLLQLPIGEAKSFVGLVDVVTKEKVIWKP--------TTDSDDGKHFKRELLSETND--PELLKEASDARNALIEQIADLDDEFAELVL-----------GEFSENFDLLSAEKLQAAVRRVTLARTAVPVLCGSSLRNKGVQPLLDAVTMYLPSPDER 312
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: A0A1S3KY81_SALSA (Ribosome-releasing factor 2, mitochondrial n=27 Tax=Salmonidae TaxID=8015 RepID=A0A1S3KY81_SALSA) HSP 1 Score: 262 bits (669), Expect = 1.930e-77 Identity = 143/278 (51.44%), Postives = 189/278 (67.99%), Query Frame = 1
Query: 4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTP-EILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDR 834
G VD GDT+TDFM QERERGITIQSAAVT +W RINLIDTPGHVDF LEVER RVLDGAV V D AGV+AQT TVWR A+KH +P I F+NKMD+ GA L + +++++L +P+ LQ+P+GSG F G++DL+T + + R+++ A D F T +L +D P L+ A EAR L+ +A++D+EFAEL+L+ GE N D P ++ AVRRV LAR VP+LCG+SLR GV+PLLD+++A+LP+P +R
Sbjct: 94 GDVDDGDTVTDFMDQERERGITIQSAAVTFDWKKHRINLIDTPGHVDFTLEVERALRVLDGAVAVFDASAGVEAQTLTVWRQAEKHHVPCICFLNKMDKPGASLHFSIESIKKKLKANPVLLQIPIGSGKSFTGLIDLITNQQMTW--------RVKSRAEDGRVFETKSLSQSDD--PELLQDAMEARAALIEQVADLDDEFAELLLEGYGE-----------NFDAVPPAKLQEAVRRVTLARKGVPVLCGSSLRNKGVQPLLDAITAYLPAPNER 350
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: A0A3P8XAH7_ESOLU (Ribosome-releasing factor 2, mitochondrial n=7 Tax=Esox lucius TaxID=8010 RepID=A0A3P8XAH7_ESOLU) HSP 1 Score: 261 bits (667), Expect = 3.520e-77 Identity = 143/278 (51.44%), Postives = 190/278 (68.35%), Query Frame = 1
Query: 4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTP-EILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDR 834
G VD GDT+TDFM QERERGITIQSAAVT +W RINLIDTPGHVDF LEVER RVLDGAV V D AGV+AQT TVWR AQKH +P I F+NKMD+ GA L + +++++L V+P+ +Q+P+GSG F G+VDL+T + + R+++ A D F T L +D P L+ A EAR L+ +A++D+EFAEL+L ++ G++ D P ++ AVRRV LAR VP+LCG+SLR GV+PLLD+++A+LP+P +R
Sbjct: 93 GDVDDGDTVTDFMVQERERGITIQSAAVTFDWKQHRINLIDTPGHVDFTLEVERALRVLDGAVAVFDASAGVEAQTLTVWRQAQKHNVPCICFLNKMDKPGASLHFSIESIKKKLKVEPVLIQIPIGSGKSFTGLVDLITKQQLTW--------RVKSRAEDGRVFETEPLSQSDD--PKLLQEAMEARAALIEKVADLDDEFAELLL-----------ADYGEDFDAIPPAKLQEAVRRVTLARKGVPVLCGSSLRNKGVQPLLDAITAYLPAPNER 349
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: UPI00087867D7 (ribosome-releasing factor 2, mitochondrial isoform X3 n=1 Tax=Scleropages formosus TaxID=113540 RepID=UPI00087867D7) HSP 1 Score: 256 bits (653), Expect = 8.280e-77 Identity = 142/278 (51.08%), Postives = 186/278 (66.91%), Query Frame = 1
Query: 4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTPEILA-AVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDR 834
G VD GDT+TDFM QERERGITIQSAAVT +W RINLIDTPGHVDF LEVER RVLDGAV V D AGV+AQT TVWR A KH +P + F+NKMD+ GA L++ V +++++L +P+ LQ+P+GSG F G+V+LVT +++ R+ FVT L +D P LR EAR+ L+ +A++D+EFAEL+L E +N D PE L AVRRV LA+ VP+LCG++LR GV+PLLD+++A+LP+P +R
Sbjct: 94 GDVDDGDTVTDFMAQERERGITIQSAAVTFDWKEHRINLIDTPGHVDFTLEVERALRVLDGAVAVFDASAGVEAQTLTVWRQADKHHVPRVCFLNKMDKPGANLSYSVESIKKKLKANPILLQIPIGSGKGFTGLVNLVTSQRMMWPQSDDSNGRV---------FVTKPLSSSDD--PELLRHVREARNNLIEQVADLDDEFAELLL-----------GEFSENFDAVPPEKLQMAVRRVTLAQKGVPVLCGSALRNKGVQPLLDAITAYLPAPNER 349 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66269.14226.1 >prot_H-elongata_contig66269.14226.1 ID=prot_H-elongata_contig66269.14226.1|Name=mRNA_H-elongata_contig66269.14226.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=342bp MTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVback to top mRNA from alignment at H-elongata_contig66269:285..2610- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66269.14226.1 ID=mRNA_H-elongata_contig66269.14226.1|Name=mRNA_H-elongata_contig66269.14226.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2326bp|location=Sequence derived from alignment at H-elongata_contig66269:285..2610- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66269:285..2610- >mRNA_H-elongata_contig66269.14226.1 ID=mRNA_H-elongata_contig66269.14226.1|Name=mRNA_H-elongata_contig66269.14226.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2052bp|location=Sequence derived from alignment at H-elongata_contig66269:285..2610- (Himanthalia elongata Himel1 dioecious)back to top |