mRNA_H-elongata_contig66258.14224.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 170 bits (431), Expect = 5.220e-41 Identity = 137/443 (30.93%), Postives = 210/443 (47.40%), Query Frame = 1
Query: 7 EFWANESGITKHMTQDPAGLEDYTAAPAGDGVESTGGTLLPVAGYGHLRLLVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPENGLLEIKVRCHVATKSGLSKPPTETALAA-TQRGPQ-----DIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFAPEGLK--IGVICTNGGGEWHG-QFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRV 1284
E W ++G HMT A ++D P V GG ++ G L L+ + F+ + LK+V + PNLG +NL S +F + + G F + +G+L +A+ L + T LAA T P+ D+ +FH + H + + TA+ G +L G C CS ++ + + + T++R+ + GR+F+ L G S+GG + M+ DDFTR + LK+KSDA A R + A +G+ + ++ ++ GGE+ G +F S +L IK+E TP Y+PQYN V ER L L+ + +A L V K+D+LWAEA+ +AC+ N + SPYE+WY P PF Y R +P KL P+G SC +G + D PRD RV
Sbjct: 523 EDWYADTGTAFHMTDSLACMKDLK--PCHKSVNGIGGVSCEISFSGTLELVFVTADSEFS-----MELKNVLYSPNLG-YNLFSPS--AEFDGESWNGLGGPDGVMTAFKGQVTF----QNFDGML-------IASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWY-GEPRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 941
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 170 bits (430), Expect = 7.290e-41 Identity = 137/443 (30.93%), Postives = 210/443 (47.40%), Query Frame = 1
Query: 7 EFWANESGITKHMTQDPAGLEDYTAAPAGDGVESTGGTLLPVAGYGHLRLLVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPENGLLEIKVRCHVATKSGLSKPPTETALAA-TQRGPQ-----DIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFAPEGLK--IGVICTNGGGEWHG-QFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRV 1284
E W ++G HMT A ++D P V GG ++ G L L+ + F+ + LK+V + PNLG +NL S +F + + G F + +G+L +A+ L + T LAA T P+ D+ +FH + H + + TA+ G +L G C CS ++ + + + T++R+ + GR+F+ L G S+GG + M+ DDFTR + LK+KSDA A R + A +G+ + ++ ++ GGE+ G +F S +L IK+E TP Y+PQYN V ER L L+ + +A L V K+D+LWAEA+ +AC+ N + SPYE+WY P PF Y R +P KL P+G SC +G + D PRD RV
Sbjct: 230 EDWYADTGTAFHMTDSLACMKDLK--PCHKSVNGIGGVSCEISFSGTLELVFVTADSEFS-----VELKNVLYSPNLG-YNLFSPS--AEFDGESWNGLGGPDGVMTAFKGQVTF----QNFDGML-------IASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWY-GEPRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 648
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 165 bits (418), Expect = 1.430e-40 Identity = 146/457 (31.95%), Postives = 211/457 (46.17%), Query Frame = 1
Query: 7 EFWANESGITKHMTQDPAGLEDYTAAPAGDGVESTGGTLLPVAGYGHLRLLVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPEN--GLLEIKVRCHVATKSGLSKPPTETALAA-TQRGPQ-----DIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFA---PEGLKIGVICTNGGGEWHGQFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRVRNLTTGQILNRS 1320
E W ++G HMT + ++D P V G VA G L L+ + F+ + LK+V + NLG +N+ S + FD P G M F + +N G+L +A+ L + T LAA T P+ DI +FH + H E + TA+ G +L G C CS S+ R + + T+ R+ + GR+F+ L G S+GG + M+ DDFTR + LK +SDA A R + A P ++I V NGG + G+F S +L IK+E TP Y+PQYN V ER L L+ + +A L V K+D+LWAEA+ +AC+ N + SPYE+WY P PF Y R +P KL P+G SC +G + D PRD RV LT + + ++
Sbjct: 111 EDWYADTGTAFHMTDSLSCMKDLK--PCHKSVNGIGSVSCEVAFSGTLELVFVTADSEFS-----VELKNVLYSQNLG-YNIFSP---SAEFDGESWNGPGGP-----DGVMTAFNGQVTFQNFDGML-------IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI-VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWY-GEPRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV--LTRARTIQKT 539
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 156 bits (395), Expect = 3.890e-39 Identity = 110/310 (35.48%), Postives = 154/310 (49.68%), Query Frame = 1
Query: 406 VATKSGLSKPPTETALAA-TQRGPQ-----DIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFA---PEGLKIGVICTNGGGEWHGQFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRV 1284
+A+ L + T LAA T P+ DI +FH + H E + TA+ G +L G C CS S+ R + + T+ R+ + GR+F L G S+GG + ++ DDFTR + L+ KSDA +A R + A P ++I V NGG + G F S +L IK+E TP Y+PQYN V ER L L+ + +A L V K+D+LWAEA+ +AC+ N + SPYE+WY P PF Y R +P KL P+G SC +G + D PRD RV
Sbjct: 3 IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEI-VRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWY-GEPRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 309
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 161 bits (408), Expect = 3.140e-38 Identity = 136/446 (30.49%), Postives = 210/446 (47.09%), Query Frame = 1
Query: 7 EFWANESGITKHMTQDPAGLEDYTAAPAGDGVESTGGTLLPVAGYGHLRLLVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPEN--GLL-----EIKVRCHVATKSGL--SKPPTETALAATQRGPQDIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFAPEGLK--IGVICTNGGGEWHG-QFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRV 1284
E W ++G HMT + ++D P V+ GG + G L L+ + F + L++V + PNLG +NL S + FD Y + G M F + +N G+L ++ C + + L S P E+ + D+ +FH + H E + TA+ G++L+G C CS S+ + + T+ R+ + GR+F+ L G S+GG + M+ DDFTR + LK KSDA +A R + A +G+ + ++ ++ GGE+ G +F S +L IK+E TP Y+PQYN V ER L L+ +A L V K+DRLWAEA+ +AC+ N + SPYE+W+ + PF Y R +P KL P+G +C +G + D PRD RV
Sbjct: 429 EDWYADTGTAFHMTDRLSCMKDLK--PCHKNVKGIGGVTCEIEFSGTLELVFVTADSQFP-----VELENVLYSPNLG-YNLFSP---SAEFDGESWNY-----LGGPDGVMTAFNGHVTFQNLDGMLISPAYRLENNCVGSVLAALTPSNPKHESKM--------DVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWH-GEASHARPYPFLKPAYCRWQRPS-KLLPKGEACFYVGPSRDHPRDCHRV 847
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 160 bits (406), Expect = 5.640e-38 Identity = 135/417 (32.37%), Postives = 193/417 (46.28%), Query Frame = 1
Query: 85 PAGDGVESTGGTLLPVAGYGHLRLLVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPENGLLEIKVRCHVATKSGLSKPPTETALAA-TQRGPQ-----DIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFA---PEGLKIGVICTNGGGEWHGQFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRV 1284
P V GG VA G L L+ + F+ + LK+V + PNLG +NL S +F + + G F + +G+L +A+ L + T LAA T P+ DI +FH + H E + TA+ G +L G C CS S+ R + + T+ R+ + GR+F+ L G S+GG + M+ DDFTR + L+ KSDA +A R + A P ++I V NGG + G+F S +L IK+E TP Y+PQYN V ER L L+ + +A L V K+D+LWAEA+ +AC+ N + PYE+WY P PF Y R +P KL P+G SC +G + D PRD RV
Sbjct: 13 PCHKSVNGIGGVSCEVAFSGTLELVFVTADSEFS-----VELKNVLYSPNLG-YNLFSPS--AEFDGESWNGLGGPDGVMTAFNGQVTF----QNFDGML-------IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEI-VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWY-GEPRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV 407
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 161 bits (407), Expect = 6.220e-38 Identity = 140/446 (31.39%), Postives = 210/446 (47.09%), Query Frame = 1
Query: 7 EFWANESGITKHMTQDPAGLEDYTAAPAGDGVESTGGTLLPVAGYGHLRLLVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPEN--GLLEIKVRCHVATKSGLSKPPTETALAA-TQRGPQ-----DIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFAPEGLK--IGVICTNGGGEWHG-QFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCR-RPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRV 1284
E W ++G +MT + ++D P + V+ GG VA G L + + F+ LK+V + P LG +NL S +F + G M F + +N G+L VAT L + LAA T P+ D+ FH + GH E + TA+ G++L+G C CS + R A+ T N + + GR+F+ L G S+GG + M+ DDFTR + L+ KSDA +A R + + A +G+ I ++ ++ GGE+ G +F S +L IK+E TP ++P++N V ER L L+ + +A L V K+DRLWAEA+ +AC+ N + SPYE+WY RP PF Y + +P KL P+G SC +G + D PRD RV
Sbjct: 250 EDWYADTGTAFNMTDSLSCMKDVN--PCHNKVKGIGGVTCEVALSGTLEVAFVSADSEFS-----AELKNVLYAPKLG-YNLFSPS--AEFDGESWNGLGGP------DGVMTAFHGHVTFQNFDGML-------VATAYRLGHNSIGSVLAALTPSNPKRVKIMDVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRA-DGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 668
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 154 bits (388), Expect = 1.340e-37 Identity = 128/370 (34.59%), Postives = 177/370 (47.84%), Query Frame = 1
Query: 100 VESTGGTLLPVA--GYGHLRL--LVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPENGLLEIKVRCHVATKSGLSKPPTETALAATQRGPQDIMKFHQVLGHPAEQITCNTARMAGVQLSG-IWRPCVHCSESRMRRYAVPKSTENRAG-RAGRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFAPE-GLKIGVICTNGGGEWHGQFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVALLRGVMEGKSDR-----LWAEAIAYACDMWNRCTSYSLDSG-TSPYELWYCRRPTFDNIPPF 1170
V+ GG PV GYG + + L + G+ + + + AHVP HNLLS L + T + + R GG F P G L + + K ++ T A P D+ H GH E++ TA+ GVQL+G PC+ CS S+ + + KST+ RA + RLF+ L G S+GGN + ++ DD TR+ V LK+KSDA A + DY A ++ V T+GGGE+ GQF + GIK+E TPP TP+YN V ERAL LL D +A E D LWAEAI+ AC N CT+ + + G SP EL++ P + PF
Sbjct: 18 VKGIGGNNAPVPPLGYGDVTVVFLTEGGRV-------PVLILNAAHVPE-SPHNLLSLSALAEE-GHTYSGQKGGLTLTTRAGGKVWF-----PRPGKLLTQEGYQIEPKVDIACAATIVPGDAKAATPTDLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN-CTATTGNPGHKSPEELFHGTPPPVGSTHPF 372
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 156 bits (394), Expect = 2.680e-36 Identity = 111/310 (35.81%), Postives = 155/310 (50.00%), Query Frame = 1
Query: 406 VATKSGLSKPPTETALAA-TQRGPQ-----DIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFA---PEGLKIGVICTNGGGEWHGQFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRV 1284
+A+ L + T LAA T P+ DI +FH + H E + TA+ G +L G C CS S+ R + T+ R+ + GR+F+ L G S+GG + M+ DDFTR + L+ KSDA +A R + A P ++I V NGG + G+F S +L IK+E TP Y+PQYN V ER L L+ + +A L V K+D+LWAEA+ +AC+ N + SPYE+WY P PF Y R +P KL P+G SC +G + D PRD RV
Sbjct: 156 IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEI-VRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWY-GEPRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV 462
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE) HSP 1 Score: 145 bits (365), Expect = 1.270e-32 Identity = 132/432 (30.56%), Postives = 194/432 (44.91%), Query Frame = 1
Query: 100 VESTGGTLLPVA--GYGHLRLLVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPENGLL------EIKVRCHVATKSGLSKPPTETALAATQRGPQDIMKFHQVLGHPAEQITCNTARMAGVQLS-GIWRPCVHCSESRMRRYAVPKSTENRA-GRAGRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFAPEGL--KIGVICTNGGGEWHGQFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVALLRGVMEGKS--------DRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRVRNLTTGQILNRSHIGAS 1335
V+ GG PV GYG + L++ L HVA P +NLLS L + T + + + GG F P G L +IK H A + + + A P D+ ++H G E + TA GVQL+ G PC+ CS S + V KST RA + R+++ L G S+GGN + ++ DDF+R+ V LK+KSDA L + DY +G+ ++ + T+GGGE+ GQF + GIK+E TPP+TP+YN V ERAL L T A L ++ LWAEAI+ AC N + S + S YE+++ P + PF L+ S+ K P+G +G A + PR + ++ R+ GA+
Sbjct: 469 VKGIGGGTAPVLFRGYGDVSLVLQTEDGGVHGPV--LNAAHVAEAP----YNLLSLSSLAEE-GHTYSGMKGGLTLTTKAGGEVWF-----PRTGKLLTQRGYQIKPTLHTACAALIVSGDAKAA------NPTDLNEYHLAHGQARETLLRITAEQQGVQLTDGPLLPCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADY-RTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPFLKPAMLK-SRRKAKSQPKGEKGWYVGPAHNHPRYCVVMLTEAGTVVITRNSPGAT 880 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66258.14224.1 >prot_H-elongata_contig66258.14224.1 ID=prot_H-elongata_contig66258.14224.1|Name=mRNA_H-elongata_contig66258.14224.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp MVIAREMDRQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCPback to top mRNA from alignment at H-elongata_contig66258:7..2188- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66258.14224.1 ID=mRNA_H-elongata_contig66258.14224.1|Name=mRNA_H-elongata_contig66258.14224.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2182bp|location=Sequence derived from alignment at H-elongata_contig66258:7..2188- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66258:7..2188- >mRNA_H-elongata_contig66258.14224.1 ID=mRNA_H-elongata_contig66258.14224.1|Name=mRNA_H-elongata_contig66258.14224.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig66258:7..2188- (Himanthalia elongata Himel1 dioecious)back to top |