mRNA_H-elongata_contig66232.14219.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66232.14219.1
Unique NamemRNA_H-elongata_contig66232.14219.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66232.14219.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.790e-42
Identity = 74/125 (59.20%), Postives = 90/125 (72.00%), Query Frame = -2 
Query:    3 LEPEWFVAFPLELSNPCSLLVGKIVGVDLSGDNEGEVDVHWYTPPRKESGCRSKYGMDVWSQVYKMEGNKRIPDAGRESVRSACFSFSSLLQSGKLPSVVWAAIEDSVPTSSLYEVDPAKDDDEG 377
            L+P WF  FPLELSNPC L+VGKIV VDLS  N GE+ V W++P  ++   RSKYG  VWSQ +  EGNK   D G ESV + CF+F SLLQSGKLPS VW A+E+SVPTSSL E D   ++++G
Sbjct:  231 LQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESVPTSSLEESDSDVEEEQG 355
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BLAST of mRNA_H-elongata_contig66232.14219.1 vs. uniprot
Match: A0A6H5KD34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD34_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 3.320e-41
Identity = 72/117 (61.54%), Postives = 84/117 (71.79%), Query Frame = -2 
Query:   27 LEPEWFVAFPLELSNPCSLLVGKIVGVDLSGDNEGEVDVHWYTPPRKESGCRSKYGMDVWSQVYKMEGNKRIPDAGRESVRSACFSFSSLLQSGKLPSVVWAAIEDSVPTSSLYEVD 377
            L+P WF  FPLELSNPC L+VGKIV VDLS  N GE+ V W++P  ++   RSKYG  VWSQ    EGNK   D G ESV++ CF+F SLLQSGKLPS VW A+E+SVP SSL E D
Sbjct:  182 LQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQENLKEGNKLTADQGTESVKAVCFTFPSLLQSGKLPSAVWDAVEESVPISSLEESD 298
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BLAST of mRNA_H-elongata_contig66232.14219.1 vs. uniprot
Match: A0A6H5K3A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A9_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.100e-39
Identity = 67/112 (59.82%), Postives = 79/112 (70.54%), Query Frame = -2 
Query:   42 LEPEWFVAFPLELSNPCSLLVGKIVGVDLSGDNEGEVDVHWYTPPRKESGCRSKYGMDVWSQVYKMEGNKRIPDAGRESVRSACFSFSSLLQSGKLPSVVWAAIEDSVPTSS 377
            L+P WF  FPLELSNPC L+VGKIV VDLS  N GE+ V W++P  ++   RSKYG  VWSQ +  EGNK   D G ESV + CF+F SLLQSGKLPS VW A+E+S   SS
Sbjct:   79 LQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESQGKSS 190
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BLAST of mRNA_H-elongata_contig66232.14219.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 8.660e-37
Identity = 62/117 (52.99%), Postives = 84/117 (71.79%), Query Frame = -2 
Query:   27 LEPEWFVAFPLELSNPCSLLVGKIVGVDLSGDNEGEVDVHWYTPPRKESGCRSKYGMDVWSQVYKMEGNKRIPDAGRESVRSACFSFSSLLQSGKLPSVVWAAIEDSVPTSSLYEVD 377
            L+P WF   PLE++N C L+VG+IV V+  G+N GEV ++W+ P  ++   RS+YG  VWSQ +  + NK  PD   ES++S CF+F SLLQSGKLPS VWAA+E+SVP+SSL E +
Sbjct:  186 LQPGWFAVLPLEMTNTCPLVVGQIVSVESGGENGGEVLINWFAPVSRKKCRRSRYGRGVWSQQFLKQDNKLTPDQSTESIKSVCFTFQSLLQSGKLPSGVWAAVEESVPSSSLEEAE 302
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BLAST of mRNA_H-elongata_contig66232.14219.1 vs. uniprot
Match: A0A6H5K4U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.090e-29
Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = -2 
Query:    3 VGKIVGVDLSGDNEGEVDVHWYTPPRKESGCRSKYGMDVWSQVYKMEGNKRIPDAGRESVRSACFSFSSLLQSGKLPSVVWAAIEDSVPTSSLYEVDPAKDDDEG 317
            V  +  VDLS  N GE+ V W++P  ++   RSKYG  VWSQ +  EGNK   D G ESV + CF+F SLLQSGKLPS VW A+E+SVPTSSL E D   ++++G
Sbjct:    4 VTSLFSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESVPTSSLEESDSDVEEEQG 108
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BLAST of mRNA_H-elongata_contig66232.14219.1 vs. uniprot
Match: A0A6H5J810_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J810_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.560e-23
Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = -2 
Query:  132 LEPEWFVAFPLELSNPCSLLVGKIVGVDLSGDNEGEVDVHWYTPPRKESGCRSKYGMDVWSQVYKMEGNKRIPDAGRESVRS 377
            L+P WF  FPLELSNPC L+VGKIV VDLS  N GE+ V W++P  ++   RSKYG  VWSQ +  EGNK   D G ESV++
Sbjct:  196 LQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVKA 277
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66232.14219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KIQ0_9PHAE1.790e-4259.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD34_9PHAE3.320e-4161.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3A9_9PHAE2.100e-3959.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYY8_ECTSI8.660e-3752.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4U0_9PHAE2.090e-2953.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J810_9PHAE3.560e-2357.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66232contigH-elongata_contig66232:2033..2412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size382
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931051.165718-CDS-H-elongata_contig66232:2032..24101622931051.165718-CDS-H-elongata_contig66232:2032..2410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66232 2033..2410 +
1691679677.984178-CDS-H-elongata_contig66232:2032..24101691679677.984178-CDS-H-elongata_contig66232:2032..2410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66232 2033..2410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66232.14219.1prot_H-elongata_contig66232.14219.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66232 2033..2410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66232.14219.1

>prot_H-elongata_contig66232.14219.1 ID=prot_H-elongata_contig66232.14219.1|Name=mRNA_H-elongata_contig66232.14219.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
WPSSSSLAGSTSYNDEVGTLSSIAAHTTDGSFPLCSKLEKEKHADRTDSL
PASGIRLLPSILYTCDHTSIPYFERQPLSLRGGVYQCTSTSPSLSPLRST
PTILPTNSEQGLDNSKGKATNHSGSK
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mRNA from alignment at H-elongata_contig66232:2033..2412+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66232.14219.1 ID=mRNA_H-elongata_contig66232.14219.1|Name=mRNA_H-elongata_contig66232.14219.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=380bp|location=Sequence derived from alignment at H-elongata_contig66232:2033..2412+ (Himanthalia elongata Himel1 dioecious)
TGGCCTTCATCATCGTCTTTGGCGGGATCAACTTCGTACAACGACGAAGT
AGGAACACTATCTTCGATAGCAGCCCATACCACTGATGGCAGTTTCCCGC
TCTGCAGCAAGCTAGAGAAGGAGAAACACGCGGACCGTACGGACTCTCTA
CCCGCGTCTGGGATCCGCTTGTTGCCCTCCATCTTATACACTTGCGACCA
CACATCCATCCCGTACTTCGAACGACAACCACTTTCCTTGCGCGGGGGTG
TGTACCAGTGCACGTCGACCTCCCCCTCATTGTCCCCACTCAGGTCCACG
CCCACGATCTTGCCAACTAATAGCGAGCAGGGATTAGACAACTCCAAGGG
GAAAGCGACAAACCACTCAGGCTCCAAATG
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Coding sequence (CDS) from alignment at H-elongata_contig66232:2033..2412+

>mRNA_H-elongata_contig66232.14219.1 ID=mRNA_H-elongata_contig66232.14219.1|Name=mRNA_H-elongata_contig66232.14219.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig66232:2033..2412+ (Himanthalia elongata Himel1 dioecious)
TGGCCTTCATCATCGTCTTTGGCGGGATCAACTTCGTACAACGACGAAGT
AGGAACACTATCTTCGATAGCAGCCCATACCACTGATGGCAGTTTCCCGC
TCTGCAGCAAGCTAGAGAAGGAGAAACACGCGGACCGTACGGACTCTCTA
CCCGCGTCTGGGATCCGCTTGTTGCCCTCCATCTTATACACTTGCGACCA
CACATCCATCCCGTACTTCGAACGACAACCACTTTCCTTGCGCGGGGGTG
TGTACCAGTGCACGTCGACCTCCCCCTCATTGTCCCCACTCAGGTCCACG
CCCACGATCTTGCCAACTAATAGCGAGCAGGGATTAGACAACTCCAAGGG
GAAAGCGACAAACCACTCAGGCTCCAAATGGCCTTCATCATCGTCTTTGG
CGGGATCAACTTCGTACAACGACGAAGTAGGAACACTATCTTCGATAGCA
GCCCATACCACTGATGGCAGTTTCCCGCTCTGCAGCAAGCTAGAGAAGGA
GAAACACGCGGACCGTACGGACTCTCTACCCGCGTCTGGGATCCGCTTGT
TGCCCTCCATCTTATACACTTGCGACCACACATCCATCCCGTACTTCGAA
CGACAACCACTTTCCTTGCGCGGGGGTGTGTACCAGTGCACGTCGACCTC
CCCCTCATTGTCCCCACTCAGGTCCACGCCCACGATCTTGCCAACTAATA
GCGAGCAGGGATTAGACAACTCCAAGGGGAAAGCGACAAACCACTCAGGC
TCCAAA
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