mRNA_H-elongata_contig66218.14217.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66218.14217.1
Unique NamemRNA_H-elongata_contig66218.14217.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66218.14217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66218contigH-elongata_contig66218:1274..1783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size312
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66218.14217.1prot_H-elongata_contig66218.14217.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66218 1274..1776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931051.0107284-CDS-H-elongata_contig66218:1273..13981622931051.0107284-CDS-H-elongata_contig66218:1273..1398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66218 1274..1398 +
1691679677.9232068-CDS-H-elongata_contig66218:1273..13981691679677.9232068-CDS-H-elongata_contig66218:1273..1398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66218 1274..1398 +
1622931051.0292468-CDS-H-elongata_contig66218:1589..17761622931051.0292468-CDS-H-elongata_contig66218:1589..1776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66218 1590..1776 +
1691679677.9341524-CDS-H-elongata_contig66218:1589..17761691679677.9341524-CDS-H-elongata_contig66218:1589..1776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66218 1590..1776 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931051.0456636-UTR-H-elongata_contig66218:1776..17831622931051.0456636-UTR-H-elongata_contig66218:1776..1783Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66218 1777..1783 +
1691679677.9437551-UTR-H-elongata_contig66218:1776..17831691679677.9437551-UTR-H-elongata_contig66218:1776..1783Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66218 1777..1783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66218.14217.1

>prot_H-elongata_contig66218.14217.1 ID=prot_H-elongata_contig66218.14217.1|Name=mRNA_H-elongata_contig66218.14217.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
GCYGCPDRDERCSGNFSSCGFICGHCCDGPRGNGFDGITQSRWTLVKKRS
RYGGLRRTTRFTYLLIHYVAYSWPEAGSERALGIAEAKFANLAKEEPLLQ
YFM*
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mRNA from alignment at H-elongata_contig66218:1274..1783+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66218.14217.1 ID=mRNA_H-elongata_contig66218.14217.1|Name=mRNA_H-elongata_contig66218.14217.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at H-elongata_contig66218:1274..1783+ (Himanthalia elongata Himel1 dioecious)
GGTTGCTACGGCTGCCCCGACCGAGACGAGCGGTGCAGTGGGAATTTTTC
CAGCTGCGGCTTCATCTGCGGTCATTGCTGCGATGGTCCTCGTGGTAACG
GCTTTGACGGCATAACTCAATCAAGGTGAACATTCCACAGAAAAAGCGAA
AGAGCTCCGGAACCCCTTTCATACTTACTTTTCGTTCGATCGCAAAATAT
CTCGGGTTGTGTATGTGTTTCCATTTACTAATAAATTCACTACTCCTACT
TCTGTATTGTACCGTAAATCATTTATTTCGTTCATGATTATTTTCCCATC
TATCTGAATTCTTCAGGTGGACACTCGTCAAGAAACGATCGCGTTACGGA
GGGTTGCGACGCACTACGCGGTTCACCTACCTCCTAATCCATTATGTGGC
CTATTCTTGGCCAGAGGCGGGAAGCGAAAGGGCGCTGGGGATTGCTGAAG
CCAAATTTGCGAATTTGGCCAAGGAAGAACCGCTTTTGCAATATTTCATG
TAGAGTGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig66218:1274..1783+

>mRNA_H-elongata_contig66218.14217.1 ID=mRNA_H-elongata_contig66218.14217.1|Name=mRNA_H-elongata_contig66218.14217.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig66218:1274..1783+ (Himanthalia elongata Himel1 dioecious)
GGTTGCTACGGCTGCCCCGACCGAGACGAGCGGTGCAGTGGGAATTTTTC
CAGCTGCGGCTTCATCTGCGGTCATTGCTGCGATGGTCCTCGTGGTAACG
GCTTTGACGGCATAACTCAATCAAGGGTTGCTACGGCTGCCCCGACCGAG
ACGAGCGGTGCAGTGGGAATTTTTCCAGCTGCGGCTTCATCTGCGGTCAT
TGCTGCGATGGTCCTCGTGGTAACGGCTTTGACGGCATAACTCAATCAAG
GTGGACACTCGTCAAGAAACGATCGCGTTACGGAGGGTTGCGACGCACTA
CGCGGTTCACCTACCTCCTAATCCATTATGTGGCCTATTCTTGGCCAGAG
GCGGGAAGCGAAAGGGCGCTGGGGATTGCTGAAGCCAAATTTGCGAATTT
GGCCAAGGAAGAACCGCTTTTGCAATATTTCATGTAGGTGGACACTCGTC
AAGAAACGATCGCGTTACGGAGGGTTGCGACGCACTACGCGGTTCACCTA
CCTCCTAATCCATTATGTGGCCTATTCTTGGCCAGAGGCGGGAAGCGAAA
GGGCGCTGGGGATTGCTGAAGCCAAATTTGCGAATTTGGCCAAGGAAGAA
CCGCTTTTGCAATATTTCATGTAG
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