mRNA_H-elongata_contig66198.14213.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66198.14213.1 vs. uniprot
Match: D7FJM8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJM8_ECTSI) HSP 1 Score: 160 bits (406), Expect = 8.380e-44 Identity = 82/94 (87.23%), Postives = 87/94 (92.55%), Query Frame = 1
Query: 1 GVHTVINFEMPRSADSYIHRVGRTARAGCGGCSVTLIGESRRIVMKEVLKTQGCEVEIKSRAVPQSAIDHYRSKIEGLESSVKDIFAEEKVRRD 282
GVHTVINFEMPRSADSYIHRVGRTARAGCGG SVTLIGESRRIVMKEVLKTQG VEIKSRAVPQSAIDH+RSKIEG+E+SVK I EEKV ++
Sbjct: 621 GVHTVINFEMPRSADSYIHRVGRTARAGCGGRSVTLIGESRRIVMKEVLKTQGEGVEIKSRAVPQSAIDHFRSKIEGMEASVKAILTEEKVEKE 714
BLAST of mRNA_H-elongata_contig66198.14213.1 vs. uniprot
Match: A0A835YJC4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC4_9STRA) HSP 1 Score: 139 bits (351), Expect = 2.270e-36 Identity = 69/94 (73.40%), Postives = 79/94 (84.04%), Query Frame = 1
Query: 1 GVHTVINFEMPRSADSYIHRVGRTARAGCGGCSVTLIGESRRIVMKEVLKTQGCEVEIKSRAVPQSAIDHYRSKIEGLESSVKDIFAEEKVRRD 282
GVHTVIN+EMPRS D+YIHRVGRTARAGCGG SVTLIGESRR+VMK+VLK Q + E+KSRAVPQS IDHYRSKI+ LE V I EEK+ ++
Sbjct: 599 GVHTVINYEMPRSRDTYIHRVGRTARAGCGGRSVTLIGESRRLVMKDVLKIQAEKAEVKSRAVPQSVIDHYRSKIDMLEDEVAAIMREEKLEKE 692
BLAST of mRNA_H-elongata_contig66198.14213.1 vs. uniprot
Match: A0A7S2V390_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V390_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 8.480e-22 Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 1
Query: 1 GVHTVINFEMPRSADSYIHRVGRTARAGCGGCSVTLIGESRRIVMKEVLKTQGCEVE------------IKSRAVPQSAIDHYRSKIEGLESSVKDIFAEEKVRRD 282
GV TVIN +MPR+ +YIHRVGR+ARAG G +VTL+GE RR VMKEVL+ +KSR VPQS +DH+R KI+ LE +K I EE++ ++
Sbjct: 372 GVRTVINLDMPRTRTTYIHRVGRSARAGKSGRAVTLVGEGRRAVMKEVLRHHXXXXXXXXXXXXXXXSMMKSRTVPQSVVDHFRLKIKALEPEIKKILDEEQMEKE 477
BLAST of mRNA_H-elongata_contig66198.14213.1 vs. uniprot
Match: A0A8K1CFP2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFP2_PYTOL) HSP 1 Score: 98.2 bits (243), Expect = 8.600e-22 Identity = 48/93 (51.61%), Postives = 67/93 (72.04%), Query Frame = 1
Query: 1 GVHTVINFEMPRSADSYIHRVGRTARAGCGGCSVTLIGESRRIVMKEVLKTQGCEVEIKSRAVPQSAIDHYRSKIEGLESSVKDIFAEEKVRR 279
GVH VIN+EMP+ +Y+HRVGRTARAG G +VTL ESRR++MK+V ++ C +KSRAVP I ++++IEG+E+ +K I EE + R
Sbjct: 565 GVHAVINYEMPKDLTTYVHRVGRTARAGRNGRAVTLTSESRRLLMKQV--SRHCHGFVKSRAVPDPVIAQWKARIEGMENDIKQIMHEETLER 655
BLAST of mRNA_H-elongata_contig66198.14213.1 vs. uniprot
Match: A0A662YB28_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YB28_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.170e-21 Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 1
Query: 1 GVHTVINFEMPRSADSYIHRVGRTARAGCGGCSVTLIGESRRIVMKEVLKTQGCEVEIKSRAVPQSAIDHYRSKIEGLESSVKDIFAEEKVRR 279
GVH VIN+EMP+ +Y+HRVGRTARAG G +VTL ESRR+VMK+V ++ C+ +KSRAVP I ++++IEG++ VK + EE + +
Sbjct: 564 GVHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTLTSESRRLVMKQV--SRHCQGFVKSRAVPDPVITQWKARIEGMQEDVKQVMHEETLEK 654
BLAST of mRNA_H-elongata_contig66198.14213.1 vs. uniprot
Match: UPI000A2A8E74 (probable ATP-dependent RNA helicase DDX27 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8E74) HSP 1 Score: 95.9 bits (237), Expect = 5.390e-21 Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 1
Query: 1 GVHTVINFEMPRSADSYIHRVGRTARAGCGGCSVTLIGESRRIVMKEVLKTQGCEVEIKSRAVPQSAIDHYRSKIEGLESSVKDIFAEEKVRRD 282
GV TVINF MP + Y+HRVGRTARAG G SVTL+GE R +KEV+K ++KSR +P I+ Y SK+E LE+ +KDI +E ++
Sbjct: 367 GVKTVINFSMPTNVKQYVHRVGRTARAGKSGRSVTLVGEKERKSLKEVVKNS--RTQVKSRIIPPEVIEKYSSKVEALEADIKDILKQENEEKE 458
BLAST of mRNA_H-elongata_contig66198.14213.1 vs. uniprot
Match: A0A484EDS2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDS2_BRELC) HSP 1 Score: 95.9 bits (237), Expect = 5.550e-21 Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 1
Query: 1 GVHTVINFEMPRSADSYIHRVGRTARAGCGGCSVTLIGESRRIVMKEVLKTQGCEVEIKSRAVPQSAIDHYRSKIEGLESSVKDIFAEEKVRR 279
GVH VIN+EMP+ +Y+HRVGRTARAG G +VTL ESRR+VMK+V ++ C+ +KSRAVP I ++++IE ++ VK++ EE + +
Sbjct: 532 GVHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTLTSESRRMVMKQV--SRHCQGFVKSRAVPDPVITQWKARIESMQEDVKEVMHEETLEK 622
BLAST of mRNA_H-elongata_contig66198.14213.1 vs. uniprot
Match: A0A0P1AUZ9_PLAHL (Dimethyladenosine transferase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUZ9_PLAHL) HSP 1 Score: 95.9 bits (237), Expect = 5.630e-21 Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 1
Query: 1 GVHTVINFEMPRSADSYIHRVGRTARAGCGGCSVTLIGESRRIVMKEVLKTQGCEVEIKSRAVPQSAIDHYRSKIEGLESSVKDIFAEEKVRR 279
GVH VIN+EMP+ +Y+HRVGRTARAG G SVTL ESRR+VMK+V ++ C+ +KSRAVP I ++++IE +E +K + EE + +
Sbjct: 521 GVHAVINYEMPKDITTYVHRVGRTARAGRNGRSVTLTSESRRLVMKQV--SRHCQGFVKSRAVPDPVIAQWKARIESMEEDIKMVMHEETLEK 611
BLAST of mRNA_H-elongata_contig66198.14213.1 vs. uniprot
Match: A0A024GL98_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GL98_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.410e-20 Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = 1
Query: 1 GVHTVINFEMPRSADSYIHRVGRTARAGCGGCSVTLIGESRRIVMKEVLKTQGCEVEIKSRAVPQSAIDHYRSKIEGLESSVKDIFAEEKVRR 279
GVH VIN+EMP+ +Y+HRVGRTARAG G +VTL ESRR++MK+V T+ C K+RAVP + I +++KI+ L+ + I EEKV +
Sbjct: 530 GVHAVINYEMPKDITTYVHRVGRTARAGQVGRAVTLTSESRRLIMKQV--TRHCHGFAKARAVPDTVITQWKAKIQSLQQDIAHILMEEKVEK 620
BLAST of mRNA_H-elongata_contig66198.14213.1 vs. uniprot
Match: A0A6G0X8Y5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8Y5_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.920e-20 Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = 1
Query: 1 GVHTVINFEMPRSADSYIHRVGRTARAGCGGCSVTLIGESRRIVMKEVLKTQGCEVEIKSRAVPQSAIDHYRSKIEGLESSVKDIFAEEKVRR 279
GVH VIN++MP+ +Y+HRVGRTARAG G +VTL E+RR++MKEV + C +KSR+VP + I ++ +IE +E VK + EE + +
Sbjct: 513 GVHAVINYQMPKDVTTYVHRVGRTARAGRNGRAVTLTSENRRLIMKEVARH--CHGFVKSRSVPDAVIAQWKKRIESMEDDVKSVMKEETIEK 603 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66198.14213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66198.14213.1 >prot_H-elongata_contig66198.14213.1 ID=prot_H-elongata_contig66198.14213.1|Name=mRNA_H-elongata_contig66198.14213.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp MPRSADSYIHRVGRTARAGCGGCSVTLIGESRRIVMKEVLKTQGCEVEIKback to top mRNA from alignment at H-elongata_contig66198:1108..2805+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66198.14213.1 ID=mRNA_H-elongata_contig66198.14213.1|Name=mRNA_H-elongata_contig66198.14213.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1698bp|location=Sequence derived from alignment at H-elongata_contig66198:1108..2805+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66198:1108..2805+ >mRNA_H-elongata_contig66198.14213.1 ID=mRNA_H-elongata_contig66198.14213.1|Name=mRNA_H-elongata_contig66198.14213.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig66198:1108..2805+ (Himanthalia elongata Himel1 dioecious)back to top |