mRNA_H-elongata_contig66183.14212.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE) HSP 1 Score: 309 bits (792), Expect = 3.200e-93 Identity = 178/278 (64.03%), Postives = 192/278 (69.06%), Query Frame = 1
Query: 1 MDTAVLERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLF-------------GAD------LSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVS-LESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 774
MDTAV ERL+DTY RMT D DSYVYLAAVQGLAALADALPGW IPRLVG+F G D L LSQRLKIGEAV+LSARRCGD MPK+AH FVNAFVVAARER++ S LES+ER HFRASCLSNLAEVCQLLRWSLGRFS D+VDL G+L ET SEE+TL RRGA+FLL ++LRGAGGDVLE+VPA LR AYRALK G DRDE TRSHAR GL YLD AIRGQLF
Sbjct: 1148 MDTAVAERLIDTYTRMTGDGDSYVYLAAVQGLAALADALPGWSIPRLVGIFTATAAAAAHGSAPGVDAAAATPLPLSQRLKIGEAVLLSARRCGDAMPKHAHLFVNAFVVAARERSSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLESKERCHFRASCLSNLAEVCQLLRWSLGRFSYDVVDLAAGVLSTETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRLAYRALKRAAGSDRDEITRSHARNGLGYLDAAIRGQLF 1425
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI) HSP 1 Score: 306 bits (783), Expect = 6.330e-92 Identity = 183/316 (57.91%), Postives = 201/316 (63.61%), Query Frame = 1
Query: 1 MDTAVLERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLFGA----------------------------DLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGY-----------SGRAGCDSGSDGSVDRG-------------------VREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 774
MDTAV ERL+DTYARM D DSYVYLAAVQGLAALADALPGW IPRLVG+F A L LSQRLKIGEAV+LSARRCGD MPKYAH FVNAFVVAARER++ G AG S +V+ V ++ + SLES+ERYHFRASCLSNLAEVCQLLRWSLGRFS D+VDL G+L ET SEE+TL RRGA+FLL ++LRGAGGDVLE+VPA LR AYRALK DRDE TRSHAR GL LD AIRGQLF
Sbjct: 1157 MDTAVAERLMDTYARMAGDGDSYVYLAAVQGLAALADALPGWSIPRLVGIFTAAAAXXXXXXXXXXXXXXXSPAXXXXXATPLPLSQRLKIGEAVLLSARRCGDAMPKYAHLFVNAFVVAARERSSDGNXXXXXXXXXXXXXXXXXPGGDAGSASLGSAAVNXXXXXXXXXXXXXXXXXXAAQVNQKPSSSSSLESKERYHFRASCLSNLAEVCQLLRWSLGRFSCDVVDLAAGVLSTETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGCLDAAIRGQLF 1472
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A835YW23_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW23_9STRA) HSP 1 Score: 210 bits (535), Expect = 1.390e-58 Identity = 125/264 (47.35%), Postives = 160/264 (60.61%), Query Frame = 1
Query: 13 VLERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLF------GAD-----LSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQL 771
VL++ +D Y M D +SYVYLAAVQGL+ L+D PG+ IP LV +F AD L+L+QRLK+GEAV+ +ARRCG+ PKYA FV AFVVAARER G DSG S+E+RER HFRASCLSNLAEVC LLRWSL +++D+VDL +G L +ET EEAT VRR + +LLS++L G G D I+P L++ YRAL++ D R HA+ GL+ +D + QL
Sbjct: 851 VLDKFVDIYVLMAQDEESYVYLAAVQGLSVLSDVSPGYVIPTLVSIFCGARAGSADHSAPPLTLAQRLKVGEAVMFAARRCGEAAPKYAQHFVGAFVVAARERV---------------GGDSG-----------------SVETRERIHFRASCLSNLAEVCALLRWSLRPYARDVVDLALGALTLETGAGEEATHVRRASAYLLSRILAGTGSDAATIMPD-LIKPVYRALRIVASTVSDGVARFHAKAGLAEIDAIMMQQL 1081
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A7S3YE87_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE87_HETAK) HSP 1 Score: 151 bits (381), Expect = 1.140e-40 Identity = 94/267 (35.21%), Postives = 143/267 (53.56%), Query Frame = 1
Query: 25 LLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLF--------------------GADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRG 765
LLD Y M AD +SYVYLAAVQGL+ LA LP +P LV F +++S +QR+K+GEA++ +AR+CG + KY+ +F+ AF++ AR R+A +V +S + +FR+SCLSNLAEVC LL+WSL R++QDI DL +GIL ME + S+EA RRG+ +++ ++L + +++ YR LK+ D D + +A++ + +DV +RG
Sbjct: 11 LLDVYGEMLADEESYVYLAAVQGLSVLATNLPAMVLPFLVEKFTGKETTIKKEAGQKEPMRSTSSEMSWAQRVKVGEALMCAARKCGASISKYSQYFMRAFILGARMRSA----------------------------------DVEDDS-DWVNFRSSCLSNLAEVCGLLKWSLDRYAQDIFDLALGILQMEGTNSQEALAARRGSLYIMYKILNSLDSTNFAGIIGSHIKSMYRRLKIVAKSDCDSLCKHNAQMCIDVIDVFMRG 242
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A1V9ZHW9_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHW9_9STRA) HSP 1 Score: 151 bits (382), Expect = 5.600e-38 Identity = 104/254 (40.94%), Postives = 136/254 (53.54%), Query Frame = 1
Query: 25 LLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLFGADL---SLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLFQ 777
L+ + DA+SYVYLA++Q LA+LAD P IP L+ AD S+ QR+K+ EA++ +ARRCG+V+P YA FV A++ A R T +ES E FRASCLSNLAEVC LLRW++ F D++ G+L +E RS+ +RRGA F+L QLL G +V EI A + YR LKL V D D +R HA LS LDV +RG+LFQ
Sbjct: 734 LMQLFLAQLLDAESYVYLASIQALASLADMHPATAIPLLLAT-AADTTQHSIDQRIKLSEALMFAARRCGEVLPAYARGFVYAYLHAIRTPTR------------------------------------DVESLEDATFRASCLSNLAEVCGLLRWAIHPFLADVLLCVKGVLEVERGRSDAHVALRRGAVFVLHQLLTLMGREVFEIA-AEHMTPIYRMLKL-VATDSDRVSRFHAEQALSELDVLMRGELFQ 948
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A6G0XAH2_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAH2_9STRA) HSP 1 Score: 145 bits (366), Expect = 6.850e-36 Identity = 94/255 (36.86%), Postives = 133/255 (52.16%), Query Frame = 1
Query: 16 LERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLV-GLFGADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLFQ 777
++ L + R D DSYV+LAAVQ LA L D IP L+ + SL +R+K+ EA+V +ARRCG+++PKY+ FV A++ R+ + ++ E + FRASCLSNLAEVC LL+WS+ + D+V GIL + ++ T +RRGA FLL +L+ GGD+ EIVP + YR LKL ++D R HA L+ LD +RG+LFQ
Sbjct: 707 IDLLFPLFVRHLEDNDSYVFLAAVQALAGLGDKYADKSIPMLLDAVKDKKYSLEKRIKLSEALVFTARRCGEIIPKYSQGFVYAYLHCIRKSDS-----------------------------QQDIVEAT--------FRASCLSNLAEVCGLLKWSIQTYIADVVGCVKGILEIGRQNTDAHTALRRGAIFLLFHMLQMMGGDIFEIVP-EYMSPIYRLLKLEASTEKDPVCRYHADQSLALLDTLMRGELFQ 923
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A6A5B0I4_9STRA (RTP1_C1 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5B0I4_9STRA) HSP 1 Score: 140 bits (353), Expect = 1.450e-35 Identity = 95/255 (37.25%), Postives = 126/255 (49.41%), Query Frame = 1
Query: 16 LERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLFGADL--SLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 774
+E L+ ADADSYVYLAAVQ LA L D IP L+ D S+ QR+K+ EA++ +ARRCGDVMPKY FV ++ R RT + E +L RASCLSNLAEVC LL W++ + D+V GIL E ++ +RRGA F+L +L+ G D+LE VP + YR LK+ ++D R HA + LD +RG+LF
Sbjct: 169 VEALVALCVHHLADADSYVYLAAVQALAGLGDVYADKTIPLLLDALAQDATYSVEQRIKLSEALLFTARRCGDVMPKYGRAFVFGYLRCIRSRTLPNDA--------------------------NDIEEATL--------RASCLSNLAEVCGLLHWAISPYITDVVGCVRGILETERLATDAHIALRRGAVFVLYNMLQLMGRDILEAVPDAMT-PIYRLLKMEASTEKDAVCRFHAENSVKALDTIMRGELF 388
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A485LCX3_9STRA (Aste57867_18971 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCX3_9STRA) HSP 1 Score: 142 bits (359), Expect = 5.890e-35 Identity = 93/242 (38.43%), Postives = 127/242 (52.48%), Query Frame = 1
Query: 55 DADSYVYLAAVQGLAALADALPGWCIPRLVGLF--GADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 774
DADSYV+LAAVQ LA L D IP L+ GA SL QR+K+ EA++ +ARRCG ++PKY+H FV ++ R + + + + FRASCLSNLAEVC LL+W++ + D+V GIL +E ++ T +RRGA FLL +L+ G D+ EIVP + YR LKL + D+ R HA+ LS LD +RG+LF
Sbjct: 712 DADSYVFLAAVQTLAGLGDVHADVTIPMLLAALQDGATYSLEQRIKLSEALLFTARRCGAMVPKYSHGFVYGYLKCIRSTAS-----------------------------QPDVVDAT--------FRASCLSNLAEVCGLLQWAIQPYIADVVGCVKGILEIERQPTDAHTALRRGAVFLLYHMLQLMGRDMFEIVPEHMT-PIYRLLKLEASTETDDVCRFHAQKSLSELDALMRGELF 915
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: K3X8E9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8E9_GLOUD) HSP 1 Score: 141 bits (356), Expect = 1.530e-34 Identity = 100/260 (38.46%), Postives = 141/260 (54.23%), Query Frame = 1
Query: 7 TAVLERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVG-LFGADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARE-RTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREE--GFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 774
T +++L+ + D +SYV+LAAVQGL+ L+DA P I LV L D SL +R+K+ EA++ +A+RCG+ +PKYA FV A++ R R R K + DS D + E G +E+ RASCLSNLAEVC LL+WSL F D++ GIL +E +E VRRGA FLL L++ G +LE++P +L + Y LK+ D+D HAR L L+ +R +LF
Sbjct: 772 TPRIQQLVQIFLTHLEDGESYVFLAAVQGLSTLSDAHPDVAISLLVSALRDRDNSLEKRIKLSEALLFTAKRCGETLPKYAKVFVYAYLDCIRPPRGQSTRRTPSKRFQLIQEIDSSEDKEPEEASVETDAGGDNTLVEAT----LRASCLSNLAEVCVLLQWSLQPFLVDVMTCVFGILQLELDATESVVAVRRGAAFLLKYLVQLMGWKMLEVMPDQL-KPMYHMLKVVERTDKDSVVVFHARKALEALNDVMRTELF 1026
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A024U9C1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9C1_9STRA) HSP 1 Score: 140 bits (353), Expect = 3.750e-34 Identity = 92/241 (38.17%), Postives = 124/241 (51.45%), Query Frame = 1
Query: 55 DADSYVYLAAVQGLAALADALPGWCIPRLV-GLFGADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 774
DADSYVYLAAVQ LA L D IP L+ + +S+ QR+K+GEA+V +ARRCG +MPKY FV+ ++ GC +R +S E FRASCLSNLAEVC LL+W++ + D+V GIL E ++ +RRGA F+L +L+ G D+LE +P + YR LK + D R HA G+ LD +RG+LF
Sbjct: 731 DADSYVYLAAVQALAGLGDVFADKTIPLLLDAVQDVKVSIEQRIKVGEALVFTARRCGAMMPKYGRAFVHGYL----------------------GC-----------IRRHPQATKMQDSLEEATFRASCLSNLAEVCGLLQWAIHPYITDVVACVRGILDTERLTTDAHIALRRGAVFVLYHMLQLFGRDILEAIPDAMT-PIYRLLKHEAASETDPVCRFHAENGVKELDTIMRGELF 937 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66183.14212.1 >prot_H-elongata_contig66183.14212.1 ID=prot_H-elongata_contig66183.14212.1|Name=mRNA_H-elongata_contig66183.14212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp MDTAVLERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLback to top mRNA from alignment at H-elongata_contig66183:427..2164+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66183.14212.1 ID=mRNA_H-elongata_contig66183.14212.1|Name=mRNA_H-elongata_contig66183.14212.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1738bp|location=Sequence derived from alignment at H-elongata_contig66183:427..2164+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66183:427..2164+ >mRNA_H-elongata_contig66183.14212.1 ID=mRNA_H-elongata_contig66183.14212.1|Name=mRNA_H-elongata_contig66183.14212.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig66183:427..2164+ (Himanthalia elongata Himel1 dioecious)back to top |