mRNA_H-elongata_contig66180.14209.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66180.14209.1
Unique NamemRNA_H-elongata_contig66180.14209.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66180.14209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66180contigH-elongata_contig66180:102..564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931050.4330301-UTR-H-elongata_contig66180:101..1801622931050.4330301-UTR-H-elongata_contig66180:101..180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66180 102..180 +
1691679677.6242383-UTR-H-elongata_contig66180:101..1801691679677.6242383-UTR-H-elongata_contig66180:101..180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66180 102..180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931050.4475362-CDS-H-elongata_contig66180:180..5641622931050.4475362-CDS-H-elongata_contig66180:180..564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66180 181..564 +
1691679677.6320033-CDS-H-elongata_contig66180:180..5641691679677.6320033-CDS-H-elongata_contig66180:180..564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66180 181..564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66180.14209.1prot_H-elongata_contig66180.14209.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66180 181..564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66180.14209.1

>prot_H-elongata_contig66180.14209.1 ID=prot_H-elongata_contig66180.14209.1|Name=mRNA_H-elongata_contig66180.14209.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
MDHVTTDRGCFWAAPAYLPAFVAAAAKYRTANLPASQPAPCPHQNLLPAV
QTQTTSRLLSRRHRPQSRSEAPQTLIRLFRPLFCLASGRPEQSVRTNVPV
VAAAAGSGAPPERPDDACRTLMARGNSS
back to top

mRNA from alignment at H-elongata_contig66180:102..564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66180.14209.1 ID=mRNA_H-elongata_contig66180.14209.1|Name=mRNA_H-elongata_contig66180.14209.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=463bp|location=Sequence derived from alignment at H-elongata_contig66180:102..564+ (Himanthalia elongata Himel1 dioecious)
TCACTAGAAAATCCGCCGTTCGCTAGGCAGGTATTGCGCTTATTGCGTAG
CCCCTACCCACTGTGTACCGCCTAAACATATGGACCATGTGACGACTGAT
CGGGGTTGTTTCTGGGCGGCTCCCGCCTATCTCCCTGCTTTTGTTGCTGC
TGCTGCGAAATATCGTACGGCCAACCTCCCCGCGTCGCAGCCTGCTCCTT
GTCCTCATCAAAACCTCCTGCCCGCTGTCCAGACGCAAACGACGAGTCGC
CTCTTGAGCCGCCGACATCGGCCTCAGTCCCGATCGGAGGCCCCGCAGAC
GTTGATACGCCTATTTCGGCCGCTGTTCTGTCTTGCCAGCGGGAGGCCGG
AACAGAGCGTCCGTACAAATGTTCCTGTTGTTGCTGCTGCTGCTGGATCG
GGGGCGCCGCCCGAGCGCCCCGACGATGCCTGTAGGACCCTAATGGCTCG
TGGAAACTCCTCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig66180:102..564+

>mRNA_H-elongata_contig66180.14209.1 ID=mRNA_H-elongata_contig66180.14209.1|Name=mRNA_H-elongata_contig66180.14209.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig66180:102..564+ (Himanthalia elongata Himel1 dioecious)
ATGGACCATGTGACGACTGATCGGGGTTGTTTCTGGGCGGCTCCCGCCTA
TCTCCCTGCTTTTGTTGCTGCTGCTGCGAAATATCGTACGGCCAACCTCC
CCGCGTCGCAGCCTGCTCCTTGTCCTCATCAAAACCTCCTGCCCGCTGTC
CAGACGCAAACGACGAGTCGCCTCTTGAGCCGCCGACATCGGCCTCAGTC
CCGATCGGAGGCCCCGCAGACGTTGATACGCCTATTTCGGCCGCTGTTCT
GTCTTGCCAGCGGGAGGCCGGAACAGAGCGTCCGTACAAATGTTCCTGTT
GTTGCTGCTGCTGCTGGATCGGGGGCGCCGCCCGAGCGCCCCGACGATGC
CTGTAGGACCCTAATGGCTCGTGGAAACTCCTCGATGGACCATGTGACGA
CTGATCGGGGTTGTTTCTGGGCGGCTCCCGCCTATCTCCCTGCTTTTGTT
GCTGCTGCTGCGAAATATCGTACGGCCAACCTCCCCGCGTCGCAGCCTGC
TCCTTGTCCTCATCAAAACCTCCTGCCCGCTGTCCAGACGCAAACGACGA
GTCGCCTCTTGAGCCGCCGACATCGGCCTCAGTCCCGATCGGAGGCCCCG
CAGACGTTGATACGCCTATTTCGGCCGCTGTTCTGTCTTGCCAGCGGGAG
GCCGGAACAGAGCGTCCGTACAAATGTTCCTGTTGTTGCTGCTGCTGCTG
GATCGGGGGCGCCGCCCGAGCGCCCCGACGATGCCTGTAGGACCCTAATG
GCTCGTGGAAACTCCTCG
back to top