mRNA_H-elongata_contig66156.14208.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66156.14208.1
Unique NamemRNA_H-elongata_contig66156.14208.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66156.14208.1 vs. uniprot
Match: D8LBZ7_ECTSI (Proteasome assembly chaperone 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBZ7_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 7.630e-73
Identity = 139/279 (49.82%), Postives = 167/279 (59.86%), Query Frame = 1 
Query:    1 PVVGYEVFGPGQSPQLCVNLELHRFADRGVTVLQQRGPVFPGEEQAFAKELMLWARESGFKSILALAGADAAEGLDPTPTLGRGAIKRFRARKPPRNLPVKPPPSCAVEEALRDAGVGVFDASGAMVDDGDRYSVLAMAPM-------EGDSTARGLATAEESGFGRDGAREEAGALEASGYAEALWRLPPLPTGTGVAGHLCREAALSQDGVDA-----SPPLVLLLHFCGEGDNTPHAVSMADTVNSALGIFPESGGPSSFSSGDFGWSSPLSWVSL 801
            P  GYEVF PGQ P LCV+LELHRFA  GVTVLQQRG V PGEE++FA EL+ WARESGFK +LAL GADAAEGLDPTP +GRG +KR+RA      L  + P  C +EEAL   G+G FD +G M   G   +++A APM        G + A G+                     A         LPPLP+GTGVAG LC EA+ ++   D      +PPLV+LL FCGEGDNTP A+ MA  VN++L + P  GG       +  WSSPLSW SL
Sbjct:   63 PAAGYEVFSPGQPPVLCVSLELHRFAKSGVTVLQQRGAVLPGEERSFAAELVEWARESGFKDVLALTGADAAEGLDPTP-IGRGGMKRYRAGTSAAALAPQSPEPCPLEEALSRVGIGAFDVAGVM--QGGWQNLMA-APMGGGALDAPGGAAAGGVXXXXXXXXXXXXXXXXXXXXXAGNETAMPPNLPPLPSGTGVAGFLCTEASSTRTAADGETEGPTPPLVVLLRFCGEGDNTPEAIEMAQAVNASLKLLP--GGGDGEGEAEVRWSSPLSWASL 335
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66156.14208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBZ7_ECTSI7.630e-7349.82Proteasome assembly chaperone 2 n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66156contigH-elongata_contig66156:41..3377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.4
Seed ortholog evalue1e-60
Seed eggNOG ortholog2880.D8LBZ7
Preferred namePSMG2
KEGG koko:K11876,ko:K11880
GOsGO:0000075,GO:0000278,GO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0009987,GO:0010564,GO:0010639,GO:0010941,GO:0010948,GO:0010965,GO:0016043,GO:0022402,GO:0022607,GO:0030071,GO:0031577,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0034622,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060548,GO:0065003,GO:0065007,GO:0071173,GO:0071174,GO:0071840,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902494,GO:1903047,GO:1905368,GO:1905369,GO:1905818,GO:1905819,GO:2000816,GO:2001251
EggNOG free text desc.proteasome assembly
EggNOG OGsKOG3112@1,KOG3112@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03051
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProteasome assembly chaperone 2
Ec32 orthologEc-20_003890.1
Exons5
Model size801
Cds size801
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66156.14208.1prot_H-elongata_contig66156.14208.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66156 41..3377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931050.2866013-CDS-H-elongata_contig66156:40..2231622931050.2866013-CDS-H-elongata_contig66156:40..223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66156 41..223 +
1691679677.5415802-CDS-H-elongata_contig66156:40..2231691679677.5415802-CDS-H-elongata_contig66156:40..223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66156 41..223 +
1622931050.299212-CDS-H-elongata_contig66156:1516..16361622931050.299212-CDS-H-elongata_contig66156:1516..1636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66156 1517..1636 +
1691679677.5556767-CDS-H-elongata_contig66156:1516..16361691679677.5556767-CDS-H-elongata_contig66156:1516..1636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66156 1517..1636 +
1622931050.3138642-CDS-H-elongata_contig66156:2094..23221622931050.3138642-CDS-H-elongata_contig66156:2094..2322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66156 2095..2322 +
1691679677.5671544-CDS-H-elongata_contig66156:2094..23221691679677.5671544-CDS-H-elongata_contig66156:2094..2322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66156 2095..2322 +
1622931050.3310387-CDS-H-elongata_contig66156:2774..30031622931050.3310387-CDS-H-elongata_contig66156:2774..3003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66156 2775..3003 +
1691679677.5828218-CDS-H-elongata_contig66156:2774..30031691679677.5828218-CDS-H-elongata_contig66156:2774..3003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66156 2775..3003 +
1622931050.3438792-CDS-H-elongata_contig66156:3336..33771622931050.3438792-CDS-H-elongata_contig66156:3336..3377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66156 3337..3377 +
1691679677.5974143-CDS-H-elongata_contig66156:3336..33771691679677.5974143-CDS-H-elongata_contig66156:3336..3377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66156 3337..3377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66156.14208.1

>prot_H-elongata_contig66156.14208.1 ID=prot_H-elongata_contig66156.14208.1|Name=mRNA_H-elongata_contig66156.14208.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=267bp
PVVGYEVFGPGQSPQLCVNLELHRFADRGVTVLQQRGPVFPGEEQAFAKE
LMLWARESGFKSILALAGADAAEGLDPTPTLGRGAIKRFRARKPPRNLPV
KPPPSCAVEEALRDAGVGVFDASGAMVDDGDRYSVLAMAPMEGDSTARGL
ATAEESGFGRDGAREEAGALEASGYAEALWRLPPLPTGTGVAGHLCREAA
LSQDGVDASPPLVLLLHFCGEGDNTPHAVSMADTVNSALGIFPESGGPSS
FSSGDFGWSSPLSWVSL
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mRNA from alignment at H-elongata_contig66156:41..3377+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66156.14208.1 ID=mRNA_H-elongata_contig66156.14208.1|Name=mRNA_H-elongata_contig66156.14208.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3337bp|location=Sequence derived from alignment at H-elongata_contig66156:41..3377+ (Himanthalia elongata Himel1 dioecious)
CCGGTCGTGGGCTACGAGGTATTCGGGCCCGGCCAGTCGCCGCAGCTCTG
CGTGAACCTGGAGCTTCATCGGTTTGCCGACAGAGGAGTGACGGTGCTTC
AGCAGCGCGGACCGGTTTTCCCCGGAGAGGAGCAGGCGTTCGCAAAGGAG
CTCATGCTGTGGGCGCGCGAGTCGGGTTTCAAGGTAAAAATGTTACGGGG
GCGGGGGACGGCGCGCCTGACATTGAAAATTTCATGCGCACGAATACACT
TATATTACAGTGCATTGTAATCTAGGTGTACTTTGTGCAGTGTGTGAGCT
CCCAAGTGATTTGTGACTTTTGAGTCGGGAAATATTGTTTGTTTTTAATT
GTAGAATCATACGCCTACAGTCTAGCTTGGCGCTAACCACTTTTCTCTCG
ACGTGACAAGGAGCAGAAGACTCCTGAACCTGAAACTGCTACGACTGCGA
AGTAGTGTTTGAGGGGTGAATTATCGACAGGCGACAGATTGACCACGAAA
CGTCGCTGCGACGTGTGTGTGTGTGTGTGTGTGTGTGTTCGCGCGGCCAT
CACATATAGCAGTGTATACTGCAATATAGCATGGATCAACCGAATATGGT
TGCGAATCCTGCTCGTGGTCAGCTGAAAAGGGAAACATGTATTTTCCCCT
ATCCCCGTTCGCGCCTGATAATTTGGTCTCACGAAGCGGGATCGGCAGTC
CTGTCCCGCCTCAGTCAGCTTGAGAGATGGGGGGAGGGTCTAGTAATATT
ATTATGCGTATGTCGTATCCTTATGGTCGGGGCGGGGGGGAGGGGGGGGG
GGCGTTCTCGAGTTTTGAGTGTCTTAGATTTTTCAAAACTGCTGTGTTTT
TACTTTTTACCTATTGTGTGAACAACGATGACGAACGTGAATGCCAACAT
GGCTGTTGACTGGCATCAAAACTCACGCCCCGCTCCCCTGATGAGGCGAG
ACAACAACTCGACGAGATGATTCAAATGAGTTAAGTACAGTCGAGAGAGA
AATAAATAAATAAATAACCACTCTCATTTTCCTATAGCGCGGTTTAGAGG
GATTTTCTTCCTTTCTCCGTCGTCGAAGTCCCCTCTTTTACGAAGCATGG
GGCTCTACGCTAGACGACGCAAGTTTAAGAATGCTTGCTAGGGTGTGGAG
GCAAAGCCGGCAAAAGCCCAGCGGAGCAACCAAAGGGAGCTAACCATCGT
GTGCTGTTTCTAGAAATTGTCGGACTTCGCAAACGAGATCCGAAGTTCCT
CCCGTTGTGGGTCGTTTGAGAACGAGGCTTCCGCCGTCTACAGGCCATGG
TCATATACGTTTGGGCGGCTCTGAGGAGGGGGGACTAAGAGCTTTAACTA
GGTAAAGGTCACCCGCCCAACTCACCCACTCCGAAGCGCATTGTTCTGTG
GCGTTTATCGGCACCGGCCTTTTTTTTCTGATGAACGACGTCTATTTTGA
TTTCGTGTGCCCTGGAAACGACGCAGAGTATTCTAGCACTTGCCGGGGCA
GACGCGGCGGAAGGCCTGGACCCAACTCCTACCCTCGGCCGCGGCGCGAT
AAAACGCTTTCGCGCTAGGAAACCCCCCAGGAATCTACCGGTAAAGGTTA
AATAAGGTTGATCGGAAATATCGGCGTTTTTACGCGGAATGGGGTGGGGG
GTGAGGGGTTGTCGGCAGACGAGCTTGTCTTTTGGGTATAAAAACAGGCA
GATCGTGGAAGCTGTTTTTCTTTGCTGTAGTTCAGGAAGGTGTAATTGAA
GTCACTGAACGGCGAAATTTGGGTTGCCTCTGGCAGCCACTGAAGCGCCC
GACCATTGTAGCACACTCTTTCCAAGGGTGGCACCTCCTCTGCGATCGAT
CGAAGCTTTGACCGGTATTCGTTTTCGAACCGTACACATGTCCTTGGGGC
CGACTATGTGAGGAGTTTTGATCGTTTACGTAGGCGTATATTTCGGCGGC
GTAAATAAACCATGTGTAACCCCCTCTCCCCCTCCCTCCTACTCCCACAC
GCCTCCACGCATGCGCTTTCCCCGCGGTGGAAAAAGGGCCAATCGCAAGA
GAAGCCACCCCCATCCTGTGCTGTAGAGGAGGCGTTACGAGACGCTGGTG
TTGGGGTATTTGATGCGTCCGGCGCGATGGTCGACGACGGTGACCGCTAC
AGCGTCTTGGCAATGGCGCCGATGGAGGGTGATTCGACCGCTAGAGGGCT
TGCCACCGCAGAAGAATCCGGGTTTGGGAGGGACGGTGCACGAGAAGAAG
CCGGCGCTTTAGAAGCATCGGGGTACGCTGAGGTGCGGTGACGAGCGCGT
ATGTGTGCGTTGTCTATATCTGCACGTCGGTGGGATAGTTCGGCGGGGAG
TTAACGAGTGCACCTCATGACGGCGGTTACAACCCGTGGGATAGTGGAGG
CGTCAAGTTGATGGTGTTGGAAAGTGTCATGTGACGTAAGGCTTCGACAG
TACGCCGTACGCCGGCATCTTCCCATATTGCTTTTTTCTGCCTCCTAAAC
TGCATTAACAACGATAGCTAGTGCCCACCAATTTCGTCGCGACTCTGTCT
TGCGGGACGTTGTTTCCAGATAGGCTTTTTGAGCGTCTCGACGATAATGA
TGATGTGGCTTCCGCATGATTTCTTTCTCCGATGATACAGTCGCTTTTCG
CCTTCGCGGCATGATAAAGCGAGCGAGCGAGCCCAAAACCGTTACATTGC
CATGCTTTCCCCCCATCGGGAGACGACATCTCAGGCGTTGTGGAGATTAC
CACCTCTACCCACGGGGACCGGAGTCGCGGGTCACCTCTGCAGGGAGGCG
GCGCTCTCTCAAGATGGGGTCGACGCTTCGCCTCCCCTGGTTCTGCTGTT
ACATTTCTGCGGAGAGGGAGACAATACTCCGCATGCCGTCAGTATGGCCG
ACACCGTCAATTCCGCCCTGGGCATTTTCCCCGAGTCGGGTGGACCGTCG
TCCTTCTCTAGCGGTGGTGAGTGCAGGAAAAACGTGTTGTGTATCTTCGG
AAATTCACTTCGTTTAGGAGGCGGAAAGAAACAATACTCTTTATTTTTTC
CACATGTATCTTATATATATATATATGTATACAAATAGCTTTATCGCTTA
AATAACAAGGATGTCCGCTCGAGCCCGGACCAGACTCTTTGGATTCCGTC
CAAGTCAGAAGCTGACGAGGGTAGGGGATGGGAGGAAGTTCCCCTCCAAA
GTTATCATTTATAGCGCCCTGTCCTGTCCTGTCCTGTCTTGCCCTGCCCC
ATCATATTTCCCCTCGCCTTCCGCACGCCTTGCTGCCTGCTTCCAGGCGA
TTTCGGATGGAGCTCGCCTCTGTCGTGGGTGTCTCTC
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Coding sequence (CDS) from alignment at H-elongata_contig66156:41..3377+

>mRNA_H-elongata_contig66156.14208.1 ID=mRNA_H-elongata_contig66156.14208.1|Name=mRNA_H-elongata_contig66156.14208.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1602bp|location=Sequence derived from alignment at H-elongata_contig66156:41..3377+ (Himanthalia elongata Himel1 dioecious)
CCGGTCGTGGGCTACGAGGTATTCGGGCCCGGCCAGTCGCCGCAGCTCTG
CGTGAACCTGGAGCTTCATCGGTTTGCCGACAGAGGAGTGACGGTGCTTC
AGCAGCGCGGACCGGTTTTCCCCGGAGAGGAGCAGGCGTTCGCAAAGGAG
CTCATGCTGTGGGCGCGCGAGTCGGGTTTCAAGCCGGTCGTGGGCTACGA
GGTATTCGGGCCCGGCCAGTCGCCGCAGCTCTGCGTGAACCTGGAGCTTC
ATCGGTTTGCCGACAGAGGAGTGACGGTGCTTCAGCAGCGCGGACCGGTT
TTCCCCGGAGAGGAGCAGGCGTTCGCAAAGGAGCTCATGCTGTGGGCGCG
CGAGTCGGGTTTCAAGAGTATTCTAGCACTTGCCGGGGCAGACGCGGCGG
AAGGCCTGGACCCAACTCCTACCCTCGGCCGCGGCGCGATAAAACGCTTT
CGCGCTAGGAAACCCCCCAGGAATCTACCGGTAAAGAGTATTCTAGCACT
TGCCGGGGCAGACGCGGCGGAAGGCCTGGACCCAACTCCTACCCTCGGCC
GCGGCGCGATAAAACGCTTTCGCGCTAGGAAACCCCCCAGGAATCTACCG
GTAAAGCCACCCCCATCCTGTGCTGTAGAGGAGGCGTTACGAGACGCTGG
TGTTGGGGTATTTGATGCGTCCGGCGCGATGGTCGACGACGGTGACCGCT
ACAGCGTCTTGGCAATGGCGCCGATGGAGGGTGATTCGACCGCTAGAGGG
CTTGCCACCGCAGAAGAATCCGGGTTTGGGAGGGACGGTGCACGAGAAGA
AGCCGGCGCTTTAGAAGCATCGGGGTACGCTGAGCCACCCCCATCCTGTG
CTGTAGAGGAGGCGTTACGAGACGCTGGTGTTGGGGTATTTGATGCGTCC
GGCGCGATGGTCGACGACGGTGACCGCTACAGCGTCTTGGCAATGGCGCC
GATGGAGGGTGATTCGACCGCTAGAGGGCTTGCCACCGCAGAAGAATCCG
GGTTTGGGAGGGACGGTGCACGAGAAGAAGCCGGCGCTTTAGAAGCATCG
GGGTACGCTGAGGCGTTGTGGAGATTACCACCTCTACCCACGGGGACCGG
AGTCGCGGGTCACCTCTGCAGGGAGGCGGCGCTCTCTCAAGATGGGGTCG
ACGCTTCGCCTCCCCTGGTTCTGCTGTTACATTTCTGCGGAGAGGGAGAC
AATACTCCGCATGCCGTCAGTATGGCCGACACCGTCAATTCCGCCCTGGG
CATTTTCCCCGAGTCGGGTGGACCGTCGTCCTTCTCTAGCGGCGTTGTGG
AGATTACCACCTCTACCCACGGGGACCGGAGTCGCGGGTCACCTCTGCAG
GGAGGCGGCGCTCTCTCAAGATGGGGTCGACGCTTCGCCTCCCCTGGTTC
TGCTGTTACATTTCTGCGGAGAGGGAGACAATACTCCGCATGCCGTCAGT
ATGGCCGACACCGTCAATTCCGCCCTGGGCATTTTCCCCGAGTCGGGTGG
ACCGTCGTCCTTCTCTAGCGGCGATTTCGGATGGAGCTCGCCTCTGTCGT
GGGTGTCTCTCGCGATTTCGGATGGAGCTCGCCTCTGTCGTGGGTGTCTC
TC
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