mRNA_H-elongata_contig66154.14207.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66154.14207.1
Unique NamemRNA_H-elongata_contig66154.14207.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig66154.14207.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 5.110e-53
Identity = 84/176 (47.73%), Postives = 118/176 (67.05%), Query Frame = 1 
Query:   25 SPGIWHRRLGHMNPQNMDLLRRKEGTGVKYTSTVSDCDICAVTKIRQQTHPKTTTRKKTKPMELVYTNLM*PITAAAK---SGYKYISKLTDDLSRMKEIFLIRGKMETAKSLHQYNITVVVPLGLRIENIRCDKGGEYTEREFKPICNNAGINVEYTAKNTPQENGVSERDGQTL 543
            S   WHRRLGH+N +++D+LR+  GTGV Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  + M P+   AK     + Y  K+TDD ++MKE++L+R K +T +++H YN+ V    G RIE IRCDKGGE T  EF+  C N+ I +EY A NTPQ+ GVSE DGQTL
Sbjct:   41 SADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSEGDGQTL 216
[Close]
BLAST of mRNA_H-elongata_contig66154.14207.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 5.260e-53
Identity = 92/181 (50.83%), Postives = 123/181 (67.96%), Query Frame = 1 
Query:    1 GVAYVAETSPGIWHRRLGHMNPQNMDLLRRKEGTGVKYTSTVSDCDICAVTKIRQQTHPKTTTRKKTKPMELVYTNLM*PITAAAKSGYKYISKLTDDLSRMKEIFLIRGKMETAKSLHQYNITVVVPLGLRIENIRCDKGGEYTEREFKPICNNAGINVEYTAKNTPQENGVSERDGQTL 543
            GVA+    +    HRRLGH+N ++M LLR+KE   V ++ +++ CDICA++K  Q  HPK T+R+ T PM LVYT++M   T  AK G+ Y+S   D  SR+KEI+L++ K ET ++LH YN+ V  PLG  IE IRCD+G E    EF   C ++GI +EY A NTPQ+NGVSERDGQTL
Sbjct:   97 GVAFATTVNANTPHRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRALHAYNMQVAAPLGRGIEIIRCDRGRENVANEFTTYCMDSGITIEYAATNTPQQNGVSERDGQTL 277
[Close]
BLAST of mRNA_H-elongata_contig66154.14207.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 5.760e-53
Identity = 93/181 (51.38%), Postives = 123/181 (67.96%), Query Frame = 1 
Query:    1 GVAYVAETSPGIWHRRLGHMNPQNMDLLRRKEGTGVKYTSTVSDCDICAVTKIRQQTHPKTTTRKKTKPMELVYTNLM*PITAAAKSGYKYISKLTDDLSRMKEIFLIRGKMETAKSLHQYNITVVVPLGLRIENIRCDKGGEYTEREFKPICNNAGINVEYTAKNTPQENGVSERDGQTL 543
            GVA  A  +   WHR L H+N ++M+LLR+KE  GV ++ +++ CDICA++K RQ  HP+ T R+ T PM+LVYT+ M   T  AK G+ Y+SK TD  S MKEI+L++   ET ++LH YN+ V  PLG RIE IRC+ GGE    EF     ++ I +EY A NTPQ+NGVSERDGQTL
Sbjct:  299 GVACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAYNMQVAAPLGRRIEIIRCESGGENVANEFTKYFMDSDITIEYAATNTPQQNGVSERDGQTL 479
[Close]
BLAST of mRNA_H-elongata_contig66154.14207.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.850e-50
Identity = 85/176 (48.30%), Postives = 119/176 (67.61%), Query Frame = 1 
Query:   25 SPGIWHRRLGHMNPQNMDLLRRKEGTGVKYTSTVSDCDICAVTKIRQQTHPKTTTRKKTKPMELVYTNLM*PITAAAK---SGYKYISKLTDDLSRMKEIFLIRGKMETAKSLHQYNITVVVPLGLRIENIRCDKGGEYTEREFKPICNNAGINVEYTAKNTPQENGVSERDGQTL 543
            S   WHRRLGH+N +++D+LR+  GTGV Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  + M P+   AK     + Y  K+TDD ++MKE++L+R K +T +++H YN+ V    G RIE IRCDKGGE T  EF+  C N+ I +EY A NTPQ+ GVSERDGQTL
Sbjct:   41 SADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTL 216
[Close]
BLAST of mRNA_H-elongata_contig66154.14207.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.230e-49
Identity = 85/176 (48.30%), Postives = 119/176 (67.61%), Query Frame = 1 
Query:   25 SPGIWHRRLGHMNPQNMDLLRRKEGTGVKYTSTVSDCDICAVTKIRQQTHPKTTTRKKTKPMELVYTNLM*PITAAAK---SGYKYISKLTDDLSRMKEIFLIRGKMETAKSLHQYNITVVVPLGLRIENIRCDKGGEYTEREFKPICNNAGINVEYTAKNTPQENGVSERDGQTL 543
            S   WHRRLGH+N +++D+LR+  GTGV Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  + M P+   AK     + Y  K+TDD ++MKE++L+R K +T +++H YN+ V    G RIE IRCDKGGE T  EF+  C N+ I +EY A NTPQ+ GVSERDGQTL
Sbjct:   41 SADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216
[Close]
BLAST of mRNA_H-elongata_contig66154.14207.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 2.860e-49
Identity = 84/176 (47.73%), Postives = 118/176 (67.05%), Query Frame = 1 
Query:   25 SPGIWHRRLGHMNPQNMDLLRRKEGTGVKYTSTVSDCDICAVTKIRQQTHPKTTTRKKTKPMELVYTNLM*PITAAAK---SGYKYISKLTDDLSRMKEIFLIRGKMETAKSLHQYNITVVVPLGLRIENIRCDKGGEYTEREFKPICNNAGINVEYTAKNTPQENGVSERDGQTL 543
            S   WHRRLGH+N +++D+LR+  GTGV Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  + M P+   AK     + Y  K+TDD ++MKE++L+R K +T +++H YN+ V    G RIE IRCDKGGE T  EF+  C N+ I +EY A NTPQ+ G SERDGQTL
Sbjct:  417 SADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTL 592
[Close]
BLAST of mRNA_H-elongata_contig66154.14207.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 3.030e-49
Identity = 85/176 (48.30%), Postives = 119/176 (67.61%), Query Frame = 1 
Query:   25 SPGIWHRRLGHMNPQNMDLLRRKEGTGVKYTSTVSDCDICAVTKIRQQTHPKTTTRKKTKPMELVYTNLM*PITAAAK---SGYKYISKLTDDLSRMKEIFLIRGKMETAKSLHQYNITVVVPLGLRIENIRCDKGGEYTEREFKPICNNAGINVEYTAKNTPQENGVSERDGQTL 543
            S   WHRRLGH+N +++D+LR+  GTGV Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  + M P+   AK     + Y  K+TDD ++MKE++L+R K +T +++H YN+ V    G RIE IRCDKGGE T  EF+  C N+ I +EY A NTPQ+ GVSERDGQTL
Sbjct:   41 SADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216
[Close]
BLAST of mRNA_H-elongata_contig66154.14207.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 3.110e-49
Identity = 85/176 (48.30%), Postives = 119/176 (67.61%), Query Frame = 1 
Query:   25 SPGIWHRRLGHMNPQNMDLLRRKEGTGVKYTSTVSDCDICAVTKIRQQTHPKTTTRKKTKPMELVYTNLM*PITAAAK---SGYKYISKLTDDLSRMKEIFLIRGKMETAKSLHQYNITVVVPLGLRIENIRCDKGGEYTEREFKPICNNAGINVEYTAKNTPQENGVSERDGQTL 543
            S   WHRRLGH+N +++D+LR+  GTGV Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  + M P+   AK     + Y  K+TDD ++MKE++L+R K +T +++H YN+ V    G RIE IRCDKGGE T  EF+  C N+ I +EY A NTPQ+ GVSERDGQTL
Sbjct:   41 SADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216
[Close]
BLAST of mRNA_H-elongata_contig66154.14207.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 5.810e-49
Identity = 84/176 (47.73%), Postives = 118/176 (67.05%), Query Frame = 1 
Query:   25 SPGIWHRRLGHMNPQNMDLLRRKEGTGVKYTSTVSDCDICAVTKIRQQTHPKTTTRKKTKPMELVYTNLM*PITAAAK---SGYKYISKLTDDLSRMKEIFLIRGKMETAKSLHQYNITVVVPLGLRIENIRCDKGGEYTEREFKPICNNAGINVEYTAKNTPQENGVSERDGQTL 543
            S   WHRRLGH+N +++D+LR+  GT V Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  + M P+   AK     + Y  K+TDD ++MKE++L+R K +T +++H YN+ V    G RIE IRCDKGGE T  EF+  C N+ I +EY A NTPQ+ GVSERDGQTL
Sbjct:  365 SADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 540
[Close]
BLAST of mRNA_H-elongata_contig66154.14207.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.660e-48
Identity = 84/176 (47.73%), Postives = 118/176 (67.05%), Query Frame = 1 
Query:   25 SPGIWHRRLGHMNPQNMDLLRRKEGTGVKYTSTVSDCDICAVTKIRQQTHPKTTTRKKTKPMELVYTNLM*PITAAAK---SGYKYISKLTDDLSRMKEIFLIRGKMETAKSLHQYNITVVVPLGLRIENIRCDKGGEYTEREFKPICNNAGINVEYTAKNTPQENGVSERDGQTL 543
            S   WHRRLGH+N +++D+LR+  GTGV Y  ++S C +C + K +Q  HPK +TR+ ++P +LV  + M P+   AK     + Y  K+TDD ++MKE++L+R K +T +++H YN+ V    G RIE IRCDKGGE T  EF+  C N+ I +EY A NTPQ+ G SERDGQTL
Sbjct:   41 SADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGGSERDGQTL 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66154.14207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ34_9PHAE5.110e-5347.73Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JT61_9PHAE5.260e-5350.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYD3_9PHAE5.760e-5351.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCM0_9PHAE1.850e-5048.30Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5K500_9PHAE1.230e-4948.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KT84_9PHAE2.860e-4947.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR8_9PHAE3.030e-4948.30Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE3.110e-4948.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVF6_9PHAE5.810e-4947.73Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE1.660e-4847.73Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66154contigH-elongata_contig66154:960..1502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score66.2
Seed ortholog evalue7.7e-09
Seed eggNOG ortholog4081.Solyc08g062410.1.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size543
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931050.224851-CDS-H-elongata_contig66154:959..11991622931050.224851-CDS-H-elongata_contig66154:959..1199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66154 960..1199 -
1691679677.519907-CDS-H-elongata_contig66154:959..11991691679677.519907-CDS-H-elongata_contig66154:959..1199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66154 960..1199 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931050.2450802-UTR-H-elongata_contig66154:1199..15021622931050.2450802-UTR-H-elongata_contig66154:1199..1502Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66154 1200..1502 -
1691679677.5311484-UTR-H-elongata_contig66154:1199..15021691679677.5311484-UTR-H-elongata_contig66154:1199..1502Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66154 1200..1502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66154.14207.1prot_H-elongata_contig66154.14207.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66154 960..1199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66154.14207.1

>prot_H-elongata_contig66154.14207.1 ID=prot_H-elongata_contig66154.14207.1|Name=mRNA_H-elongata_contig66154.14207.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MKEIFLIRGKMETAKSLHQYNITVVVPLGLRIENIRCDKGGEYTEREFKP
ICNNAGINVEYTAKNTPQENGVSERDGQTL
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mRNA from alignment at H-elongata_contig66154:960..1502-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66154.14207.1 ID=mRNA_H-elongata_contig66154.14207.1|Name=mRNA_H-elongata_contig66154.14207.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at H-elongata_contig66154:960..1502- (Himanthalia elongata Himel1 dioecious)
GGTGTCGCGTACGTTGCTGAAACTAGCCCCGGCATCTGGCACAGAAGACT
AGGGCATATGAATCCCCAAAATATGGACCTACTGCGTCGAAAGGAAGGAA
CTGGCGTCAAGTACACCAGTACAGTGTCGGACTGCGATATTTGCGCTGTA
ACAAAAATTAGGCAACAAACACACCCCAAGACGACAACGCGCAAGAAAAC
CAAGCCGATGGAGCTGGTCTACACAAATCTCATGTGACCCATCACCGCTG
CGGCCAAGAGTGGGTACAAATACATCAGCAAGCTCACCGACGACTTATCG
CGCATGAAGGAGATCTTCCTCATCAGGGGCAAGATGGAGACCGCCAAATC
GCTACATCAGTACAACATCACGGTGGTAGTTCCGCTTGGACTCCGTATCG
AGAACATCCGATGCGACAAGGGTGGTGAGTATACCGAGAGGGAGTTCAAA
CCTATTTGCAACAACGCCGGGATCAACGTGGAGTACACGGCAAAAAACAC
ACCGCAAGAAAATGGGGTGTCCGAGAGGGACGGGCAGACATTA
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Coding sequence (CDS) from alignment at H-elongata_contig66154:960..1502-

>mRNA_H-elongata_contig66154.14207.1 ID=mRNA_H-elongata_contig66154.14207.1|Name=mRNA_H-elongata_contig66154.14207.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig66154:960..1502- (Himanthalia elongata Himel1 dioecious)
ATGAAGGAGATCTTCCTCATCAGGGGCAAGATGGAGACCGCCAAATCGCT
ACATCAGTACAACATCACGGTGGTAGTTCCGCTTGGACTCCGTATCGAGA
ACATCCGATGCGACAAGGGTGGTGAGTATACCGAGAGGGAGTTCAAACCT
ATTTGCAACAACGCCGGGATCAACGTGGAGTACACGGCAAAAAACACACC
GCAAGAAAATGGGGTGTCCGAGAGGGACGGGCAGACATTAATGAAGGAGA
TCTTCCTCATCAGGGGCAAGATGGAGACCGCCAAATCGCTACATCAGTAC
AACATCACGGTGGTAGTTCCGCTTGGACTCCGTATCGAGAACATCCGATG
CGACAAGGGTGGTGAGTATACCGAGAGGGAGTTCAAACCTATTTGCAACA
ACGCCGGGATCAACGTGGAGTACACGGCAAAAAACACACCGCAAGAAAAT
GGGGTGTCCGAGAGGGACGGGCAGACATTA
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